Mario Stanke
Orcid: 0000-0001-8696-0384
According to our database1,
Mario Stanke
authored at least 29 papers
between 2003 and 2024.
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Bibliography
2024
learnMSA2: deep protein multiple alignments with large language and hidden Markov models.
Bioinform., 2024
2023
2022
End-to-end learning of evolutionary models to find coding regions in genome alignments.
Bioinform., 2022
Proceedings of the Applications of Evolutionary Computation - 25th European Conference, 2022
2021
2019
BMC Bioinform., 2019
2016
Bioinform., 2016
2015
2014
CRF-based models of protein surfaces improve protein-protein interaction site predictions.
BMC Bioinform., 2014
2013
WebAUGUSTUS - a web service for training AUGUSTUS and predicting genes in eukaryotes.
Nucleic Acids Res., 2013
2012
jpHMM: recombination analysis in viruses with circular genomes such as the hepatitis B virus.
Nucleic Acids Res., 2012
2011
BMC Bioinform., 2011
A novel hybrid gene prediction method employing protein multiple sequence alignments.
Bioinform., 2011
2010
2009
Nucleic Acids Res., 2009
AUGUSTUS at MediGRID: Adaption of a bioinformatics application to grid computing for efficient genome analysis.
Future Gener. Comput. Syst., 2009
2008
Scipio: Using protein sequences to determine the precise exon/intron structures of genes and their orthologs in closely related species.
BMC Bioinform., 2008
Using native and syntenically mapped cDNA alignments to improve <i>de novo</i> gene finding.
Bioinform., 2008
2007
2006
Nucleic Acids Res., 2006
Nucleic Acids Res., 2006
Gene prediction in eukaryotes with a generalized hidden Markov model that uses hints from external sources.
BMC Bioinform., 2006
A jumping profile Hidden Markov Model and applications to recombination sites in HIV and HCV genomes.
BMC Bioinform., 2006
2005
AUGUSTUS: a web server for gene prediction in eukaryotes that allows user-defined constraints.
Nucleic Acids Res., 2005
2004
2003
Gene prediction with a hidden Markov model and a new intron submodel.
Proceedings of the European Conference on Computational Biology (ECCB 2003), 2003