Mario Medvedovic

According to our database, Mario Medvedovic authored at least 18 papers between 2002 and 2022.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2022

SigCom LINCS: data and metadata search engine for a million gene expression signatures.

John Erol Evangelista, Daniel J. B. Clarke, Zhuorui Xie, Alexander Lachmann, Minji Jeon, Kerwin Chen, Kathleen M. Jagodnik, Sherry L. Jenkins, Maxim V. Kuleshov, Megan L. Wojciechowicz, Stephan C. Schürer, Mario Medvedovic, Avi Ma'ayan

Nucleic Acids Res., 2022

2020

LINCS Data Portal 2.0: next generation access point for perturbation-response signatures.

Vasileios Stathias, John Paul Turner, Amar Koleti, Dusica Vidovic, Daniel J. Cooper, Mehdi Fazel-Najafabadi, Marcin Pilarczyk, Raymond Terryn, Caty Chung, Afoma Umeano, Daniel J. B. Clarke, Alexander Lachmann, John Erol Evangelista, Avi Ma'ayan, Mario Medvedovic, Stephan C. Schürer

Nucleic Acids Res., 2020

piNET: a versatile web platform for downstream analysis and visualization of proteomics data.

Behrouz Shamsaei, Szymon Chojnacki, Marcin Pilarczyk, Mehdi Fazel-Najafabadi, Wen Niu, Chuming Chen, Karen Ross, Andrea Matlock, Jeremy Muhlich, Somchai Chutipongtanate, Jie Zheng, John Turner, Dusica Vidovic, Jake Jaffe, Michael J. MacCoss, Cathy Wu, Ajay Pillai, Avi Ma'ayan, Stephan C. Schürer, Michal Kouril, Mario Medvedovic, Jarek Meller

Nucleic Acids Res., 2020

Predicting mechanism of action of cellular perturbations with pathway activity signatures.

Yan Ren, Siva Sivaganesan, Nicholas A. Clark, Lixia Zhang, Jacek Biesiada, Wen Niu, David R. Plas, Mario Medvedovic

Bioinform., 2020

2018

Data Portal for the Library of Integrated Network-based Cellular Signatures (LINCS) program: integrated access to diverse large-scale cellular perturbation response data.

Amar Koleti, Raymond Terryn, Vasileios Stathias, Caty Chung, Daniel J. Cooper, John Paul Turner, Dusica Vidovic, Michele Forlin, Tanya T. Kelley, Alessandro D'Urso, Bryce K. Allen, Denis Torre, Kathleen M. Jagodnik, Lily Wang, Sherry L. Jenkins, Christopher Mader, Wen Niu, Mehdi Fazel, Naim Al Mahi, Marcin Pilarczyk, Nicholas A. Clark, Behrouz Shamsaei, Jarek Meller, Juozas Vasiliauskas, John Reichard, Mario Medvedovic, Avi Ma'ayan, Ajay Pillai, Stephan C. Schürer

Nucleic Acids Res., 2018

2013

Genome-Wide Signatures of Transcription Factor Activity: Connecting Transcription Factors, Disease, and Small Molecules.

Jing Chen, Zhen Hu, Mukta Phatak, John Reichard, Johannes M. Freudenberg, Siva Sivaganesan, Mario Medvedovic

PLoS Comput. Biol., 2013

2011

WebGimm: An integrated web-based platform for cluster analysis, functional analysis, and interactive visualization of results.

Vineet K. Joshi, Johannes M. Freudenberg, Zhen Hu, Mario Medvedovic

Source Code Biol. Medicine, 2011

Generalized random set framework for functional enrichment analysis using primary genomics datasets.

Johannes M. Freudenberg, Siva Sivaganesan, Mukta Phatak, Kaustubh Shinde, Mario Medvedovic

Bioinform., 2011

2010

A semi-parametric Bayesian model for unsupervised differential co-expression analysis.

Johannes M. Freudenberg, Siva Sivaganesan, Michael Wagner, Mario Medvedovic

BMC Bioinform., 2010

Prior Information Based Bayesian Infinite Mixture Model.

Zhen Hu, Siva Sivaganesan, Mario Medvedovic

Proceedings of the International Symposium on Artificial Intelligence and Mathematics, 2010

2009

CLEAN: CLustering Enrichment ANalysis.

Johannes M. Freudenberg, Vineet K. Joshi, Zhen Hu, Mario Medvedovic

BMC Bioinform., 2009

LRpath: a logistic regression approach for identifying enriched biological groups in gene expression data.

Maureen A. Sartor, George D. Leikauf, Mario Medvedovic

Bioinform., 2009

2007

Bayesian hierarchical model for transcriptional module discovery by jointly modeling gene expression and ChIP-chip data.

Xiangdong Liu, Walter J. Jessen, Siva Sivaganesan, Bruce J. Aronow, Mario Medvedovic

BMC Bioinform., 2007

2006

Intensity-based hierarchical Bayes method improves testing for differentially expressed genes in microarray experiments.

Maureen A. Sartor, Craig R. Tomlinson, Scott C. Wesselkamper, Siva Sivaganesan, George D. Leikauf, Mario Medvedovic

BMC Bioinform., 2006

Context-specific infinite mixtures for clustering gene expression profiles across diverse microarray dataset.

Xiangdong Liu, Siva Sivaganesan, Ka Yee Yeung, Junhai Guo, Roger Eugene Bumgarner, Mario Medvedovic

Bioinform., 2006

2004

Bayesian mixture model based clustering of replicated microarray data.

Mario Medvedovic, Ka Yee Yeung, Roger Eugene Bumgarner

Bioinform., 2004

Bayesian Model-Averaging in Unsupervised Learning From Microarray Data.

Mario Medvedovic, Junhai Guo

Proceedings of the 4th ACM SIGKDD Workshop on Data Mining in Bioinformatics (BIOKDD 2004), 2004

2002

Bayesian infinite mixture model based clustering of gene expression profiles.

Mario Medvedovic, Siva Sivaganesan

Bioinform., 2002