Marília D. V. Braga

According to our database, Marília D. V. Braga authored at least 41 papers between 2002 and 2024.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of three.

2024

Investigating the complexity of the double distance problems.

Marília D. V. Braga, Leonie R. Brockmann, Katharina Klerx, Jens Stoye

Algorithms Mol. Biol., December, 2024

Closing the complexity gap of the double distance problem.

Luís Cunha, Thiago Lopes, Uéverton S. Souza, Marília D. V. Braga, Jens Stoye

CoRR, 2024

2023

Efficient gene orthology inference via large-scale rearrangements.

Diego P. Rubert, Marília D. V. Braga

Algorithms Mol. Biol., December, 2023

On the Class of Double Distance Problems.

Marília D. V. Braga, Leonie R. Brockmann, Katharina Klerx, Jens Stoye

Proceedings of the Comparative Genomics - 20th International Conference, 2023

2022

Gene Orthology Inference via Large-Scale Rearrangements for Partially Assembled Genomes.

Diego P. Rubert, Marília D. V. Braga

Proceedings of the 22nd International Workshop on Algorithms in Bioinformatics, 2022

A Linear Time Algorithm for an Extended Version of the Breakpoint Double Distance.

Marília D. V. Braga, Leonie R. Brockmann, Katharina Klerx, Jens Stoye

Proceedings of the 22nd International Workshop on Algorithms in Bioinformatics, 2022

2021

Computing the Inversion-Indel Distance.

Eyla Willing, Jens Stoye, Marília D. V. Braga

IEEE ACM Trans. Comput. Biol. Bioinform., 2021

Computing the Rearrangement Distance of Natural Genomes.

Leonard Bohnenkämper, Marília D. V. Braga, Daniel Doerr, Jens Stoye

J. Comput. Biol., 2021

The potential of family-free rearrangements towards gene orthology inference.

Diego P. Rubert, Daniel Doerr, Marília D. V. Braga

J. Bioinform. Comput. Biol., 2021

Natural family-free genomic distance.

Diego P. Rubert, Fábio Viduani Martinez, Marília D. V. Braga

Algorithms Mol. Biol., 2021

2018

Computing the family-free DCJ similarity.

Diego P. Rubert, Edna Ayako Hoshino, Marília D. V. Braga, Jens Stoye, Fábio Viduani Martinez

BMC Bioinform., 2018

2017

Genomic Distance with High Indel Costs.

Poly H. da Silva, Raphael Machado, Simone Dantas, Marília D. V. Braga

IEEE ACM Trans. Comput. Biol. Bioinform., 2017

Approximating the DCJ distance of balanced genomes in linear time.

Diego P. Rubert, Pedro Feijão, Marília Dias Vieira Braga, Jens Stoye, Fábio Viduani Martinez

Algorithms Mol. Biol., 2017

Algorithms for Computing the Family-Free Genomic Similarity Under DCJ.

Diego P. Rubert, Gabriela Medeiros, Edna Ayako Hoshino, Marília D. V. Braga, Jens Stoye, Fábio Viduani Martinez

Proceedings of the Comparative Genomics - 15th International Workshop, 2017

2016

A Linear Time Approximation Algorithm for the DCJ Distance for Genomes with Bounded Number of Duplicates.

Diego P. Rubert, Pedro Feijão, Marília D. V. Braga, Jens Stoye, Fábio Viduani Martinez

Proceedings of the Algorithms in Bioinformatics - 16th International Workshop, 2016

2015

Sorting Linear Genomes with Rearrangements and Indels.

Marília D. V. Braga, Jens Stoye

IEEE ACM Trans. Comput. Biol. Bioinform., 2015

On the family-free DCJ distance and similarity.

Fábio Viduani Martinez, Pedro Feijão, Marília D. V. Braga, Jens Stoye

Algorithms Mol. Biol., 2015

2014

On the Family-Free DCJ Distance.

Fábio Viduani Martinez, Pedro Feijão, Marília D. V. Braga, Jens Stoye

Proceedings of the Algorithms in Bioinformatics - 14th International Workshop, 2014

2013

On the inversion-indel distance.

Eyla Willing, Simone Zaccaria, Marília D. V. Braga, Jens Stoye

BMC Bioinform., 2013

DCJ-indel and DCJ-substitution distances with distinct operation costs.

Poly H. da Silva, Raphael Machado, Simone Dantas, Marília D. V. Braga

Algorithms Mol. Biol., 2013

Restricted DCJ-Indel Model Revisited.

Marília D. V. Braga, Jens Stoye

Proceedings of the Advances in Bioinformatics and Computational Biology, 2013

An Overview of Genomic Distances Modeled with Indels.

Marília D. V. Braga

Proceedings of the Nature of Computation. Logic, Algorithms, Applications, 2013

The Potential of Family-Free Genome Comparison.

Marília D. V. Braga, Cédric Chauve, Daniel Doerr, Katharina Jahn, Jens Stoye, Annelyse Thévenin, Roland Wittler

Proceedings of the Models and Algorithms for Genome Evolution, 2013

2012

Restricted DCJ-indel model: sorting linear genomes with DCJ and indels.

Poly H. da Silva, Raphael Machado, Simone Dantas, Marília D. V. Braga

BMC Bioinform., 2012

DCJ-indel Distance with Distinct Operation Costs.

Poly H. da Silva, Marília D. V. Braga, Raphael Machado, Simone Dantas

Proceedings of the Algorithms in Bioinformatics - 12th International Workshop, 2012

2011

Restricted DCJ Model: Rearrangement Problems with Chromosome Reincorporation.

Jakub Kovác, Robert Warren, Marília D. V. Braga, Jens Stoye

J. Comput. Biol., 2011

Double Cut and Join with Insertions and Deletions.

Marília D. V. Braga, Eyla Willing, Jens Stoye

J. Comput. Biol., 2011

On the weight of indels in genomic distances.

Marília D. V. Braga, Raphael Machado, Leonardo Costa Ribeiro, Jens Stoye

BMC Bioinform., 2011

Genomic distance under gene substitutions.

Marília D. V. Braga, Raphael Machado, Leonardo Costa Ribeiro, Jens Stoye

BMC Bioinform., 2011

Analysis and Implementation of Sorting by Transpositions Using Permutation Trees.

Marcelo P. Lopes, Marília D. V. Braga, Celina M. H. de Figueiredo, Rodrigo de A. Hausen, Luis Antonio Brasil Kowada

Proceedings of the Advances in Bioinformatics and Computational Biology, 2011

2010

The Solution Space of Sorting by DCJ.

Marília D. V. Braga, Jens Stoye

J. Comput. Biol., 2010

Repetition-free longest common subsequence.

Said Sadique Adi, Marília D. V. Braga, Cristina G. Fernandes, Carlos Eduardo Ferreira, Fábio Viduani Martinez, Marie-France Sagot, Marco Aurelio Stefanes, Christian Tjandraatmadja, Yoshiko Wakabayashi

Discret. Appl. Math., 2010

Genomic Distance with DCJ and Indels.

Marília D. V. Braga, Eyla Willing, Jens Stoye

Proceedings of the Algorithms in Bioinformatics, 10th International Workshop, 2010

The Problem of Chromosome Reincorporation in DCJ Sorting and Halving.

Jakub Kovác, Marília D. V. Braga, Jens Stoye

Proceedings of the Comparative Genomics - International Workshop, 2010

On Sorting Genomes with DCJ and Indels.

Marília D. V. Braga

Proceedings of the Comparative Genomics - International Workshop, 2010

2009

<tt>baobabLUNA</tt>: the solution space of sorting by reversals.

Marília D. V. Braga

Bioinform., 2009

An asymmetric approach to preserve common intervals while sorting by reversals.

Marília D. V. Braga, Christian Gautier, Marie-France Sagot

Algorithms Mol. Biol., 2009

Counting All DCJ Sorting Scenarios.

Marília D. V. Braga, Jens Stoye

Proceedings of the Comparative Genomics, International Workshop, 2009

2008

Exploring the Solution Space of Sorting by Reversals, with Experiments and an Application to Evolution.

Marília D. V. Braga, Marie-France Sagot, Céline Scornavacca, Eric Tannier

IEEE ACM Trans. Comput. Biol. Bioinform., 2008

2007

The Solution Space of Sorting by Reversals.

Marília D. V. Braga, Marie-France Sagot, Céline Scornavacca, Eric Tannier

Proceedings of the Bioinformatics Research and Applications, Third International Symposium, 2007

2002

An Algorithm That Builds a Set of Strings Given Its Overlap Graph.

Marília D. V. Braga, Joao Meidanis

Proceedings of the LATIN 2002: Theoretical Informatics, 2002