Marek Wodzinski

Orcid: 0000-0002-8076-6246

According to our database1, Marek Wodzinski authored at least 53 papers between 2017 and 2024.

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Bibliography

2024
The ACROBAT 2022 challenge: Automatic registration of breast cancer tissue.
Medical Image Anal., 2024

Multimodal representations of biomedical knowledge from limited training whole slide images and reports using deep learning.
Medical Image Anal., 2024

Automatic Labels are as Effective as Manual Labels in Biomedical Images Classification with Deep Learning.
CoRR, 2024

Improving Quality Control of Whole Slide Images by Explicit Artifact Augmentation.
CoRR, 2024

DeeperHistReg: Robust Whole Slide Images Registration Framework.
CoRR, 2024

Automatic Cranial Defect Reconstruction with Self-Supervised Deep Deformable Masked Autoencoders.
CoRR, 2024

Eye-tracking in Mixed Reality for Diagnosis of Neurodegenerative Diseases.
CoRR, 2024

Deep Learning-Based Segmentation of Tumors in PET/CT Volumes: Benchmark of Different Architectures and Training Strategies.
CoRR, 2024

RegWSI: Whole slide image registration using combined deep feature- and intensity-based methods: Winner of the ACROBAT 2023 challenge.
Comput. Methods Programs Biomed., 2024

Improving deep learning-based automatic cranial defect reconstruction by heavy data augmentation: From image registration to latent diffusion models.
Comput. Biol. Medicine, 2024

Automatic Registration of SHG and H&E Images with Feature-Based Initial Alignment and Intensity-Based Instance Optimization: Contribution to the COMULIS Challenge.
Proceedings of the Biomedical Image Registration - 11th International Workshop, 2024

Multimodal Approach for the Diagnosis of Neurodegenerative Disorders Using Augmented Reality.
Proceedings of the IEEE Conference on Virtual Reality and 3D User Interfaces Abstracts and Workshops, 2024

Patch-Based Encoder-Decoder Architecture For Automatic Transmitted Light To Fluorescence Imaging Transition: Contribution To The Lightmycells Challenge.
Proceedings of the IEEE International Symposium on Biomedical Imaging, 2024

Augmented Reality Platform for Neurological Evaluations.
Proceedings of INI-DH 2024: Workshop on Innovative Interfaces in Digital Healthcare co-located with International Conference on Advanced Visual Interfaces 2024 (AVI 2024), 2024

EsmTemp - Transfer Learning Approach for Predicting Protein Thermostability.
Proceedings of the Computational Science - ICCS 2024, 2024

2023
Towards clinical applicability and computational efficiency in automatic cranial implant design: An overview of the AutoImplant 2021 cranial implant design challenge.
Medical Image Anal., August, 2023

Learn2Reg: Comprehensive Multi-Task Medical Image Registration Challenge, Dataset and Evaluation in the Era of Deep Learning.
IEEE Trans. Medical Imaging, March, 2023

DRU-Net: Pulmonary Artery Segmentation via Dense Residual U-Network with Hybrid Loss Function.
Sensors, 2023

Benchmarking the CoW with the TopCoW Challenge: Topology-Aware Anatomical Segmentation of the Circle of Willis for CTA and MRA.
CoRR, 2023

Robust Multiresolution and Multistain Background Segmentation in Whole Slide Images.
Proceedings of the Latest Developments and Challenges in Biomedical Engineering, 2023

Improving Segmentation of Hypoxic Ischemic Encephalopathy Lesions by Heavy Data Augmentation: Contribution to the BONBID Challenge.
Proceedings of the AI for Brain Lesion Detection and Trauma Video Action Recognition, 2023

Automatic Aorta Segmentation with Heavily Augmented, High-Resolution 3-D ResUNet: Contribution to the SEG.A Challenge.
Proceedings of the Segmentation of the Aorta. Towards the Automatic Segmentation, Modeling, and Meshing of the Aortic Vessel Tree from Multicenter Acquisition, 2023

High-Resolution Cranial Defect Reconstruction by Iterative, Low-Resolution, Point Cloud Completion Transformers.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2023, 2023

Deep Generative Networks for Heterogeneous Augmentation of Cranial Defects.
Proceedings of the IEEE/CVF International Conference on Computer Vision, 2023

Artifact Augmentation for Learning-based Quality Control of Whole Slide Images.
Proceedings of the 45th Annual International Conference of the IEEE Engineering in Medicine & Biology Society, 2023

Vision Transformer for Parkinson's Disease Classification using Multilingual Sustained Vowel Recordings.
Proceedings of the 45th Annual International Conference of the IEEE Engineering in Medicine & Biology Society, 2023

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Proceedings of the IEEE/CVF Conference on Computer Vision and Pattern Recognition, 2023

2022
Unleashing the potential of digital pathology data by training computer-aided diagnosis models without human annotations.
npj Digit. Medicine, 2022

Deep learning-based framework for automatic cranial defect reconstruction and implant modeling.
Comput. Methods Programs Biomed., 2022

Unsupervised Method for Intra-patient Registration of Brain Magnetic Resonance Images Based on Objective Function Weighting by Inverse Consistency: Contribution to the BraTS-Reg Challenge.
Proceedings of the Brainlesion: Glioma, Multiple Sclerosis, Stroke and Traumatic Brain Injuries, 2022

2021
Semi-Supervised Deep Learning-Based Image Registration Method with Volume Penalty for Real-Time Breast Tumor Bed Localization.
Sensors, 2021

Learn2Reg: comprehensive multi-task medical image registration challenge, dataset and evaluation in the era of deep learning.
CoRR, 2021

DeepHistReg: Unsupervised Deep Learning Registration Framework for Differently Stained Histology Samples.
Comput. Methods Programs Biomed., 2021

Adversarial Affine Registration for Real-Time Intraoperative Registration of 3-D US-US for Brain Shift Correction.
Proceedings of the Simplifying Medical Ultrasound - Second International Workshop, 2021

Improving the Automatic Cranial Implant Design in Cranioplasty by Linking Different Datasets.
Proceedings of the Towards the Automatization of Cranial Implant Design in Cranioplasty II, 2021

Semi-supervised Multilevel Symmetric Image Registration Method for Magnetic Resonance Whole Brain Images.
Proceedings of the Biomedical Image Registration, Domain Generalisation and Out-of-Distribution Analysis - MICCAI 2021 Challenges: MIDOG 2021, MOOD 2021, and Learn2Reg 2021, Held in Conjunction with MICCAI 2021, Strasbourg, France, September 27, 2021

Invnet: A Deep Learning Approach To Invert Complex Deformation Fields.
Proceedings of the 18th IEEE International Symposium on Biomedical Imaging, 2021

2020
ANHIR: Automatic Non-Rigid Histological Image Registration Challenge.
IEEE Trans. Medical Imaging, 2020

Contact-Free Multispectral Identity Verification System Using Palm Veins and Deep Neural Network.
Sensors, 2020

Learning-Based Affine Registration of Histological Images.
Proceedings of the Biomedical Image Registration - 9th International Workshop, 2020

Unsupervised Learning-Based Nonrigid Registration of High Resolution Histology Images.
Proceedings of the Machine Learning in Medical Imaging - 11th International Workshop, 2020

Multi-step, Learning-Based, Semi-supervised Image Registration Algorithm.
Proceedings of the Segmentation, Classification, and Registration of Multi-modality Medical Imaging Data, 2020

Automatic Quality Assessment of Reflectance Confocal Microscopy Mosaics using Attention-Based Deep Neural Network.
Proceedings of the 42nd Annual International Conference of the IEEE Engineering in Medicine & Biology Society, 2020

Training Deep Neural Networks for Small and Highly Heterogeneous MRI Datasets for Cancer Grading.
Proceedings of the 42nd Annual International Conference of the IEEE Engineering in Medicine & Biology Society, 2020

2019
Automatic Nonrigid Histological Image Registration with Adaptive Multistep Algorithm.
CoRR, 2019

Convolutional Neural Network Approach to Classify Skin Lesions Using Reflectance Confocal Microscopy.
Proceedings of the 41st Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2019

Deep Learning Approach to Parkinson's Disease Detection Using Voice Recordings and Convolutional Neural Network Dedicated to Image Classification.
Proceedings of the 41st Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2019

2018
Resection-Based Demons Regularization for Breast Tumor Bed Propagation.
Proceedings of the Image Analysis for Moving Organ, Breast, and Thoracic Images, 2018

Rigid Registration Method for Medical Volumes with Large Deformations and Missing Data.
Proceedings of the 25th International Conference on Systems, Signals and Image Processing, 2018

Artificial CT Data Generation Method with Known Ground-Truth for Image Registration with Missing Data.
Proceedings of the 2018 IEEE International Conference on Imaging Systems and Techniques, 2018

Volume regularization in explicit image registration used for breast cancer bed localization.
Proceedings of the 15th IEEE International Symposium on Biomedical Imaging, 2018

2017
Application of demons image registration algorithms in resected breast cancer lodge localization.
Proceedings of the Signal Processing: Algorithms, 2017

Application of B-splines FFD image registration in breast cancer radiotherapy planning.
Proceedings of the International Conference on Systems, Signals and Image Processing, 2017


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