Marek Palkowski

Orcid: 0000-0002-5932-4523

Affiliations:
  • West Pomeranian University of Technology in Szczecin, Poland


According to our database1, Marek Palkowski authored at least 47 papers between 2008 and 2023.

Collaborative distances:
  • Dijkstra number2 of five.
  • Erdős number3 of four.

Timeline

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Bibliography

2023
NPDP benchmark suite for the evaluation of the effectiveness of automatic optimizing compilers.
Parallel Comput., 2023

Polyhedral Tiling Strategies for the Zuker Algorithm Optimization.
Proceedings of the Communication Papers of the 18th Conference on Computer Science and Intelligence Systems, 2023

2022
NPDP Benchmark Suite for Loop Tiling Effectiveness Evaluation.
Proceedings of the Parallel Processing and Applied Mathematics, 2022

Automatic code optimization for computing the McCaskill partition functions.
Proceedings of the 17th Conference on Computer Science and Intelligence Systems, 2022

2021
RNA Folding Codes Optimization Using the Intel SDK for OpenCL.
Proceedings of the Artificial Intelligence and Soft Computing, 2021

Implementation of Nussinov's RNA Folding Using the Kokkos Library.
Proceedings of the Progress in Image Processing, Pattern Recognition and Communication Systems, 2021

2020
Parallel tiled cache and energy efficient codes for O(n4) RNA folding algorithms.
J. Parallel Distributed Comput., 2020

Automatic Generation of Parallel Cache-Efficient Code Implementing Zuker's RNA Folding.
Proceedings of the Artificial Intelligence and Soft Computing, 2020

2019
Tiling Nussinov's RNA folding loop nest with a space-time approach.
BMC Bioinform., 2019

Parallel Tiled Cache and Energy Efficient Code for Zuker's RNA Folding.
Proceedings of the Parallel Processing and Applied Mathematics, 2019

Energy Consumption Analysis of the Nussinov RNA Folding Implementations.
Proceedings of the Artificial Intelligence and Soft Computing, 2019

Parallel cache-efficient code for computing the McCaskill partition functions.
Proceedings of the 2019 Federated Conference on Computer Science and Information Systems, 2019

2018
Parallel Tiled Codes Implementing the Smith-Waterman Alignment Algorithm for Two and Three Sequences.
J. Comput. Biol., 2018

Generation of parallel synchronization-free tiled code.
Computing, 2018

Tuning iteration space slicing based tiled multi-core code implementing Nussinov's RNA folding.
BMC Bioinform., 2018

Parallel Cache Efficient Algorithm and Implementation of Needleman-Wunsch Global Sequence Alignment.
Proceedings of the Artificial Intelligence and Soft Computing, 2018

Accelerating Minimum Cost Polygon Triangulation Code with the TRACO Compiler.
Proceedings of the Communication Papers of the 2018 Federated Conference on Computer Science and Information Systems, 2018

Transitive Closure Based Schedule of Loop Nest Statement Instances.
Proceedings of the Advances in Soft and Hard Computing, 2018

2017
Parallel Tiled Code Generation with Loop Permutation within Tiles.
Comput. Informatics, 2017

Parallel tiled Nussinov RNA folding loop nest generated using both dependence graph transitive closure and loop skewing.
BMC Bioinform., 2017

A Practical Approach to Tiling Zuker's RNA Folding Using the Transitive Closure of Loop Dependence Graphs.
Proceedings of the Information Systems Architecture and Technology: Proceedings of 38th International Conference on Information Systems Architecture and Technology - ISAT 2017, 2017

Improving Data Locality of RNA Secondary Structure Prediction Code.
Proceedings of the Artificial Intelligence and Soft Computing, 2017

Optimizing Numerical Code by means of the Transitive Closure of Dependence Graphs.
Proceedings of the 2017 Federated Conference on Computer Science and Information Systems, 2017

2016
TRACO: Source-to-Source Parallelizing Compiler.
Comput. Informatics, 2016

Tiling arbitrarily nested loops by means of the transitive closure of dependence graphs.
Int. J. Appl. Math. Comput. Sci., 2016

Synchronization-Free Automatic Parallelization for Arbitrarily Nested Affine Loops.
Proceedings of the 2016 International Symposium on Computer Architecture and High Performance Computing Workshops, 2016

Finding Free Schedules for RNA Secondary Structure Prediction.
Proceedings of the Artificial Intelligence and Soft Computing, 2016

An Iteration Space Visualizer for Polyhedral Loop Transformations in Numerical Programming.
Proceedings of the 2016 Federated Conference on Computer Science and Information Systems, 2016

Loop Nest Tiling for Image Processing and Communication Applications.
Proceedings of the Hard and Soft Computing for Artificial Intelligence, 2016

2015
Free Scheduling of Tiles Based on the Transitive Closure of Dependence Graphs.
Proceedings of the Parallel Processing and Applied Mathematics, 2015

Using an Artificial Neural Network to Predict Loop Transformation Time.
Proceedings of the Artificial Intelligence and Soft Computing, 2015

TRACO: An automatic loop nest parallelizer for numerical applications.
Proceedings of the 2015 Federated Conference on Computer Science and Information Systems, 2015

2014
Usage of the TRACO Compiler for Neural Network Parallelization.
Proceedings of the Artificial Intelligence and Soft Computing, 2014

TRACO Parallelizing Compiler.
Proceedings of the Soft Computing in Computer and Information Science, 2014

Perfectly Nested Loop Tiling Transformations Based on the Transitive Closure of the Program Dependence Graph.
Proceedings of the Soft Computing in Computer and Information Science, 2014

2012
Free scheduling for statement instances of parameterized arbitrarily nested affine loops.
Parallel Comput., 2012

An Iterative Algorithm of Computing the Transitive Closure of a Union of Parametrized Affine Integer Tuple Relations.
Discret. Math. Algorithms Appl., 2012

Automatic Privatization for Parallel Execution of Loops.
Proceedings of the Artificial Intelligence and Soft Computing, 2012

Impact of Variable Privatization on Extracting Synchronization-Free Slices for Multi-core Computers.
Proceedings of the Facing the Multicore-Challenge, 2012

2011
Coarse-grained loop parallelization: Iteration Space Slicing vs affine transformations.
Parallel Comput., 2011

Using Free Scheduling for Programming Graphic Cards.
Proceedings of the Facing the Multicore - Challenge II, 2011

2010
Coarse-Grained Loop Parallelization for Image Processing and Communication Applications.
Proceedings of the Image Processing and Communications Challenges 2, 2010

An Iterative Algorithm of Computing the Transitive Closure of a Union of Parameterized Affine Integer Tuple Relations.
Proceedings of the Combinatorial Optimization and Applications, 2010

2009
Extracting Both Affine and Non-linear Synchronization-Free Slices in Program Loops.
Proceedings of the Parallel Processing and Applied Mathematics, 2009

Synchronization-Free Automatic Parallelization: Beyond Affine Iteration-Space Slicing.
Proceedings of the Languages and Compilers for Parallel Computing, 2009

2008
Using Message Passing for Developing Coarse-Grained Applications in OpenMP.
Proceedings of the ICSOFT 2008, 2008

Finding Synchronization-Free Parallelism Represented with Trees of Dependent Operations.
Proceedings of the Algorithms and Architectures for Parallel Processing, 2008


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