Marco Salemi

According to our database, Marco Salemi authored at least 17 papers between 2004 and 2024.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2024

DeepDynaForecast: Phylogenetic-informed graph deep learning for epidemic transmission dynamic prediction.

Chaoyue Sun, Ruogu Fang, Marco Salemi, Mattia Prosperi, Brittany Rife Magalis

PLoS Comput. Biol., 2024

Forecasting dominance of SARS-CoV-2 lineages by anomaly detection using deep AutoEncoders.

Simone Rancati, Giovanna Nicora, Mattia Prosperi, Riccardo Bellazzi, Marco Salemi, Simone Marini

Briefings Bioinform., 2024

Learning on Forecasting HIV Epidemic Based on Individuals' Contact Networks.

Chaoyue Sun, Yiyang Liu, Christina Parisi, Rebecca Fisk-Hoffman, Marco Salemi, Ruogu Fang, Brandi Danforth, Mattia Prosperi, Simone Marini

Proceedings of the 17th International Joint Conference on Biomedical Engineering Systems and Technologies, 2024

2023

ARCA: the interactive database for arbovirus reported cases in the Americas.

Maria V. Meneses, Alberto Riva, Marco Salemi, Carla Mavian

BMC Bioinform., December, 2023

2022

Optimizing viral genome subsampling by genetic diversity and temporal distribution (TARDiS) for phylogenetics.

Simone Marini, Carla Mavian, Alberto Riva, Mattia Prosperi, Marco Salemi, Brittany Rife Magalis

Bioinform., 2022

Dynamic Prediction of Non-Neutral SARS-Cov-2 Variants Using Incremental Machine Learning.

Giovanna Nicora, Simone Marini, Marco Salemi, Riccardo Bellazzi

Proceedings of the Challenges of Trustable AI and Added-Value on Health, 2022

Transmission cluster characteristics of global, regional, and lineage-specific SARS-CoV-2 phylogenies.

Mattia Prosperi, Brittany Rife Magalis, Simone Marini, Marco Salemi

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022

2021

Causal AI with Real World Data: Do Statins Protect from Alzheimer's Disease Onset?

Mattia Prosperi, Shantanu Ghosh, Zhaoyi Chen, Marco Salemi, Tianchen Lyu, Jinying Zhao, Jiang Bian

Proceedings of the ICMHI 2021: 5th International Conference on Medical and Health Informatics, 2021

2020

New Insights into the Effect of Residue Mutations on the Rotavirus VP1 Function Using Molecular Dynamic Simulations.

Nabil Abid, Daniele Pietrucci, Marco Salemi, Giovanni Chillemi

J. Chem. Inf. Model., 2020

2019

Unexpected Predictors of Antibiotic Resistance in Housekeeping Genes of Staphylococcus Aureus.

Mattia Prosperi, Taj Azarian, Judith A. Johnson, Marco Salemi, Franco Milicchio, Marco Oliva

Proceedings of the 10th ACM International Conference on Bioinformatics, 2019

2015

Identification of dual-tropic HIV-1 using evolved neural networks.

Gary B. Fogel, Susanna L. Lamers, Enoch S. Liu, Marco Salemi, Michael S. McGrath

Biosyst., 2015

2014

Baseline CD4⁺ T Cell Counts Correlates with HIV-1 Synonymous Rate in HLA-B*5701 Subjects with Different Risk of Disease Progression.

Melissa M. Norström, Nazle M. Veras, Wei Huang, Mattia C. F. Prosperi, Jennifer Cook, Wendy Hartogensis, Frederick M. Hecht, Annika C. Karlsoon, Marco Salemi

PLoS Comput. Biol., 2014

HIV-associated neuropathogenesis: A systems biology perspective for modeling and therapy.

Susanna L. Lamers, Gary B. Fogel, David J. Nolan, Michael S. McGrath, Marco Salemi

Biosyst., 2014

Evolved neural networks for HIV-1 co-receptor identification.

Gary B. Fogel, Enoch S. Liu, Marco Salemi, Susanna L. Lamers, Michael S. McGrath

Proceedings of the IEEE Congress on Evolutionary Computation, 2014

2012

QuRe: software for viral quasispecies reconstruction from next-generation sequencing data.

Mattia C. F. Prosperi, Marco Salemi

Bioinform., 2012

2008

Prediction of R5, X4, and R5X4 HIV-1 Coreceptor Usage with Evolved Neural Networks.

Susanna L. Lamers, Marco Salemi, Michael S. McGrath, Gary B. Fogel

IEEE ACM Trans. Comput. Biol. Bioinform., 2008

2004

HIVbase: a PC/Windows-based software offering storage and querying power for locally held HIV-1 genetic, experimental and clinical data.

Susanna L. Lamers, Scott Beason, Luke Dunlap, Robert Compton, Marco Salemi

Bioinform., 2004