Marco S. Nobile

Orcid: 0000-0002-7692-7203

According to our database1, Marco S. Nobile authored at least 99 papers between 2012 and 2024.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

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Bibliography

2024
Python library for interval-valued fuzzy inference.
SoftwareX, 2024

An explainable data-driven decision support framework for strategic customer development.
Knowl. Based Syst., 2024

Applications of IFIS python library in interval-valued fuzzy inference problems.
Proceedings of the IEEE International Conference on Fuzzy Systems, 2024

A Fast Feature Selection for Interpretable Modeling Based on Fuzzy Inference Systems.
Proceedings of the IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology, 2024

Predicting Metabolic Reactions with a Molecular Transformer for Drug Design Optimization.
Proceedings of the IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology, 2024

2023
Ten quick tips for fuzzy logic modeling of biomedical systems.
PLoS Comput. Biol., December, 2023

Barcode demultiplexing of nanopore sequencing raw signals by unsupervised machine learning.
Frontiers Bioinform., May, 2023

Unsupervised neural networks as a support tool for pathology diagnosis in MALDI-MSI experiments: A case study on thyroid biopsies.
Expert Syst. Appl., April, 2023

An accurate and time-efficient deep learning-based system for automated segmentation and reporting of cardiac magnetic resonance-detected ischemic scar.
Comput. Methods Programs Biomed., February, 2023

Models of Representation in Computational Intelligence [Guest Editorial].
IEEE Comput. Intell. Mag., February, 2023

Measuring Perceived Trust in XAI-Assisted Decision-Making by Eliciting a Mental Model.
CoRR, 2023

Assisting clinical practice with fuzzy probabilistic decision trees.
CoRR, 2023

A Theoretical Framework for AI Models Explainability with Application in Biomedicine.
Proceedings of the IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology, 2023

Estimation of Fuzzy Models from Mixed Data Sets with pyFUME.
Proceedings of the IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology, 2023

Trustworthy Artificial Intelligence in Medical Applications: A Mini Survey.
Proceedings of the IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology, 2023

Investigating Semi-Automatic Assessment of Data Sets Fairness by Means of Fuzzy Logic.
Proceedings of the IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology, 2023

The Domination Game: Dilating Bubbles to Fill Up Pareto Fronts.
Proceedings of the IEEE Congress on Evolutionary Computation, 2023

Trustworthy Machine Learning Predictions to Support Clinical Research and Decisions.
Proceedings of the 36th IEEE International Symposium on Computer-Based Medical Systems, 2023

2022
SMGen: A Generator of Synthetic Models of Biochemical Reaction Networks.
Symmetry, 2022

Salp Swarm Optimization: A critical review.
Expert Syst. Appl., 2022

Building Interpretable and Parsimonious Fuzzy Models using a Multi-Objective Approach.
Proceedings of the IEEE International Conference on Fuzzy Systems, 2022

Local Bubble Dilation Functions: Hypersphere-bounded Landscape Deformations Simplify Global Optimization.
Proceedings of the IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology, 2022

Comparing Interpretable AI Approaches for the Clinical Environment: an Application to COVID-19.
Proceedings of the IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology, 2022

Predicting and Characterizing Legal Claims of Hospitals with Computational Intelligence: the Legal and Ethical Implications.
Proceedings of the IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology, 2022

The Impact of Variable Selection and Transformation on the Interpretability and Accuracy of Fuzzy Models.
Proceedings of the IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology, 2022

2021
A CUDA-powered method for the feature extraction and unsupervised analysis of medical images.
J. Supercomput., 2021

FiCoS: A fine-grained and coarse-grained GPU-powered deterministic simulator for biochemical networks.
PLoS Comput. Biol., 2021

Investigating the performance of multi-objective optimization when learning Bayesian Networks.
Neurocomputing, 2021

Accelerated global sensitivity analysis of genome-wide constraint-based metabolic models.
BMC Bioinform., 2021

Tremor assessment using smartphone sensor data and fuzzy reasoning.
BMC Bioinform., 2021

Characterizing the flying behaviour of bird flocks with fuzzy reasoning.
Proceedings of WILF 2021, 2021

A comparison of multi-objective optimization algorithms to identify drug target combinations.
Proceedings of the IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology, 2021

The Impact of Representation on the Optimization of Marker Panels for Single-cell RNA Data.
Proceedings of the IEEE Congress on Evolutionary Computation, 2021

If You Can't Beat It, Squash It: Simplify Global Optimization by Evolving Dilation Functions.
Proceedings of the IEEE Congress on Evolutionary Computation, 2021

2020
CNN-Based Prostate Zonal Segmentation on T2-Weighted MR Images: A Cross-Dataset Study.
Proceedings of the Neural Approaches to Dynamics of Signal Exchanges, 2020

cuProCell: GPU-Accelerated Analysis of Cell Proliferation With Flow Cytometry Data.
IEEE J. Biomed. Health Informatics, 2020

Coupling Mechanistic Approaches and Fuzzy Logic to Model and Simulate Complex Systems.
IEEE Trans. Fuzzy Syst., 2020

Simpful: A User-Friendly Python Library for Fuzzy Logic.
Int. J. Comput. Intell. Syst., 2020

Computational Intelligence for Life Sciences.
Fundam. Informaticae, 2020

Surfing on Fitness Landscapes: A Boost on Optimization by Fourier Surrogate Modeling.
Entropy, 2020

Fuzzy modeling and global optimization to predict novel therapeutic targets in cancer cells.
Bioinform., 2020

A Graph Theory Approach to Fuzzy Rule Base Simplification.
Proceedings of the Information Processing and Management of Uncertainty in Knowledge-Based Systems, 2020

On the automatic calibration of fully analogical spiking neuromorphic chips.
Proceedings of the 2020 International Joint Conference on Neural Networks, 2020

pyFUME: a Python Package for Fuzzy Model Estimation.
Proceedings of the 29th IEEE International Conference on Fuzzy Systems, 2020

Fourier Surrogate Models of Dilated Fitness Landscapes in Systems Biology : or how we learned to torture optimization problems until they confess.
Proceedings of the IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology, 2020

Which random is the best random? A study on sampling methods in Fourier surrogate modeling.
Proceedings of the IEEE Congress on Evolutionary Computation, 2020

Preventing litigation with a predictive model of COVID-19 ICUs occupancy.
Proceedings of the 2020 IEEE International Conference on Big Data (IEEE BigData 2020), 2020

2019
Towards Human Cell Simulation.
Proceedings of the High-Performance Modelling and Simulation for Big Data Applications, 2019

ginSODA: massive parallel integration of stiff ODE systems on GPUs.
J. Supercomput., 2019

Efficient computational strategies to learn the structure of probabilistic graphical models of cumulative phenomena.
J. Comput. Sci., 2019

USE-Net: Incorporating Squeeze-and-Excitation blocks into U-Net for prostate zonal segmentation of multi-institutional MRI datasets.
Neurocomputing, 2019

MedGA: A novel evolutionary method for image enhancement in medical imaging systems.
Expert Syst. Appl., 2019

CNN-based Prostate Zonal Segmentation on T2-weighted MR Images: A Cross-dataset Study.
CoRR, 2019

A novel framework for MR image segmentation and quantification by using MedGA.
Comput. Methods Programs Biomed., 2019

GenHap: a novel computational method based on genetic algorithms for haplotype assembly.
BMC Bioinform., 2019

Modeling cell proliferation in human acute myeloid leukemia xenografts.
Bioinform., 2019

Biochemical parameter estimation vs. benchmark functions: A comparative study of optimization performance and representation design.
Appl. Soft Comput., 2019

A Novel Multi-objective Approach to Fuzzy Clustering.
Proceedings of the IEEE Symposium Series on Computational Intelligence, 2019

HaraliCU: GPU-Powered Haralick Feature Extraction on Medical Images Exploiting the Full Dynamics of Gray-Scale Levels.
Proceedings of the Parallel Computing Technologies, 2019

A Swarm Intelligence Approach to Avoid Local Optima in Fuzzy C-Means Clustering.
Proceedings of the 2019 IEEE International Conference on Fuzzy Systems, 2019

ProCell: Investigating cell proliferation with Swarm Intelligence.
Proceedings of the IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology, 2019

Dilation Functions in Global Optimization.
Proceedings of the IEEE Congress on Evolutionary Computation, 2019

2018
Fuzzy Self-Tuning PSO: A settings-free algorithm for global optimization.
Swarm Evol. Comput., 2018

Multi-objective optimization to explicitly account for model complexity when learning Bayesian Networks.
CoRR, 2018

GPU-Powered Multi-Swarm Parameter Estimation of Biological Systems: A Master-Slave Approach.
Proceedings of the 26th Euromicro International Conference on Parallel, 2018

Structural Learning of Probabilistic Graphical Models of Cumulative Phenomena.
Proceedings of the Computational Science - ICCS 2018, 2018

High Performance Computing for Haplotyping: Models and Platforms.
Proceedings of the Euro-Par 2018: Parallel Processing Workshops, 2018

GPU Accelerated Analysis of Treg-Teff Cross Regulation in Relapsing-Remitting Multiple Sclerosis.
Proceedings of the Euro-Par 2018: Parallel Processing Workshops, 2018

Efficient and Settings-Free Calibration of Detailed Kinetic Metabolic Models with Enzyme Isoforms Characterization.
Proceedings of the Computational Intelligence Methods for Bioinformatics and Biostatistics, 2018

Global Sensitivity Analysis of Constraint-Based Metabolic Models.
Proceedings of the Computational Intelligence Methods for Bioinformatics and Biostatistics, 2018

Computational Intelligence for Parameter Estimation of Biochemical Systems.
Proceedings of the 2018 IEEE Congress on Evolutionary Computation, 2018

2017
Gillespie's Stochastic Simulation Algorithm on MIC coprocessors.
J. Supercomput., 2017

Efficient Simulation of Reaction Systems on Graphics Processing Units.
Fundam. Informaticae, 2017

Learning the Probabilistic Structure of Cumulative Phenomena with Suppes-Bayes Causal Networks.
CoRR, 2017

LASSIE: simulating large-scale models of biochemical systems on GPUs.
BMC Bioinform., 2017

GPU-powered model analysis with PySB/cupSODA.
Bioinform., 2017

Graphics processing units in bioinformatics, computational biology and systems biology.
Briefings Bioinform., 2017

Accelerated Analysis of Biological Parameters Space Using GPUs.
Proceedings of the Parallel Computing Technologies, 2017

Reboot strategies in particle swarm optimization and their impact on parameter estimation of biochemical systems.
Proceedings of the IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology, 2017

Estimation of Kinetic Reaction Constants: Exploiting Reboot Strategies to Improve PSO's Performance.
Proceedings of the Computational Intelligence Methods for Bioinformatics and Biostatistics, 2017

Proactive Particles in Swarm Optimization: A settings-free algorithm for real-parameter single objective optimization problems.
Proceedings of the 2017 IEEE Congress on Evolutionary Computation, 2017

2016
GPU-powered Bat Algorithm for the parameter estimation of biochemical kinetic values.
Proceedings of the 2016 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology, 2016

Parallel implementation of efficient search schemes for the inference of cancer progression models.
Proceedings of the 2016 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology, 2016

COSYS: A Computational Infrastructure for Systems Biology.
Proceedings of the Computational Intelligence Methods for Bioinformatics and Biostatistics, 2016

GPU-powered and settings-free parameter estimation of biochemical systems.
Proceedings of the IEEE Congress on Evolutionary Computation, 2016

2015
Parallelizing Biochemical Stochastic Simulations: A Comparison of GPUs and Intel Xeon Phi Processors.
Proceedings of the Parallel Computing Technologies - 13th International Conference, PaCT 2015, Petrozavodsk, Russia, August 31, 2015

Proactive Particles in Swarm Optimization: A self-tuning algorithm based on Fuzzy Logic.
Proceedings of the 2015 IEEE International Conference on Fuzzy Systems, 2015

The impact of particles initialization in PSO: Parameter estimation as a case in point.
Proceedings of the IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology, 2015

A double swarm methodology for parameter estimation in oscillating Gene Regulatory Networks.
Proceedings of the IEEE Congress on Evolutionary Computation, 2015

2014
GPU-accelerated simulations of mass-action kinetics models with cupSODA.
J. Supercomput., 2014

Simulation and Analysis of the Blood Coagulation Cascade Accelerated on GPU.
Proceedings of the 22nd Euromicro International Conference on Parallel, 2014

A memetic hybrid method for the Molecular Distance Geometry Problem with incomplete information.
Proceedings of the IEEE Congress on Evolutionary Computation, 2014

2013
GPU-powered Simulation Methodologies for Biological Systems.
Proceedings of the Proceedings Wivace 2013, 2013

cupSODA: A CUDA-Powered Simulator of Mass-Action Kinetics.
Proceedings of the Parallel Computing Technologies - 12th International Conference, 2013

Evolutionary inference of biochemical reaction networks accelerated on graphics processing units.
Proceedings of the International Conference on High Performance Computing & Simulation, 2013

Reverse engineering of kinetic reaction networks by means of Cartesian Genetic Programming and Particle Swarm Optimization.
Proceedings of the IEEE Congress on Evolutionary Computation, 2013

The foundation of Evolutionary Petri Nets.
Proceedings of the International Workshop on Biological Processes & Petri Nets, 2013

2012
Estimating reaction constants in stochastic biological systems with a multi-swarm PSO running on GPUs.
Proceedings of the Genetic and Evolutionary Computation Conference, 2012

A GPU-Based Multi-swarm PSO Method for Parameter Estimation in Stochastic Biological Systems Exploiting Discrete-Time Target Series.
Proceedings of the Evolutionary Computation, Machine Learning and Data Mining in Bioinformatics, 2012


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