Marco Roos

Orcid: 0000-0002-8691-772X

According to our database1, Marco Roos authored at least 69 papers between 2006 and 2023.

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Bibliography

2023
The use of foundational ontologies in biomedical research.
J. Biomed. Semant., December, 2023

A Resource for Guiding Data Stewards to Make European Rare Disease Patient Registries FAIR.
Data Sci. J., January, 2023

The FAIR Data Point Populator: collaborative FAIRification and population of FAIR Data Points.
Proceedings of the 14th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences (SWAT4HCLS 2023), 2023

Updating the CEMO ontology for future epidemiological challenges.
Proceedings of the 14th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences (SWAT4HCLS 2023), 2023

FAIRification and semantic modelling for Duchenne and Becker Muscular Dystrophy rare diseases.
Proceedings of the 14th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences (SWAT4HCLS 2023), 2023

Structured review on Huntington's disease iron hypothesis.
Proceedings of the 14th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences (SWAT4HCLS 2023), 2023

Surveyed common data access policies preferences amongst European Reference Networks.
Proceedings of the 14th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences (SWAT4HCLS 2023), 2023

A Method to Facilitate the Identification of FAIRification Objectives.
Proceedings of the International Conference on Biomedical Ontologies 2023 together with the Workshop on Ontologies for Infectious and Immune-Mediated Disease Data Science (OIIDDS 2023) and the FAIR Ontology Harmonization and TRUST Data Interoperability Workshop (FOHTI 2023), Brasília, Brazil, August 28, 2023

A goal-oriented method for FAIRification planning.
Proceedings of the Companion Proceedings of the 42nd International Conference on Conceptual Modeling: ER Forum, 2023

2022
FAIR Digital Twins for Data-Intensive Research.
Frontiers Big Data, 2022

Applying the FAIR principles to data in a hospital: challenges and opportunities in a pandemic.
J. Biomed. Semant., 2022

Semantic modelling of common data elements for rare disease registries, and a prototype workflow for their deployment over registry data.
J. Biomed. Semant., 2022

Phenopackets for the Semantic Web.
Proceedings of the 13th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences, 2022

The Use of Foundational Ontologies in Bioinformatics.
Proceedings of the 13th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences, 2022

2021
De-novo FAIRification via an Electronic Data Capture system by automated transformation of filled electronic Case Report Forms into machine-readable data.
J. Biomed. Informatics, 2021

Reuse of Design Pattern Measurements for Health Data.
Proceedings of the Joint Ontology Workshops 2021 Episode VII: The Bolzano Summer of Knowledge co-located with the 12th International Conference on Formal Ontology in Information Systems (FOIS 2021), 2021

LUMC Clinical Ontology for Biomedical Research.
Proceedings of the International Conference on Biomedical Ontologies 2021 co-located with the Workshop on Ontologies for the Behavioural and Social Sciences (OntoBess 2021) as part of the Bolzano Summer of Knowledge (BOSK 2021), 2021

Enabling FAIR Discovery of Rare Disease Digital Resources.
Proceedings of the Navigating Healthcare Through Challenging Times - Proceedings of dHealth 2021, 2021

2020
Making FAIR Easy with FAIR Tools: From Creolization to Convergence.
Data Intell., 2020

The "A" of FAIR - As Open as Possible, as Closed as Necessary.
Data Intell., 2020

A Generic Workflow for the Data FAIRification Process.
Data Intell., 2020

FAIR Principles: Interpretations and Implementation Considerations.
Data Intell., 2020

Applying the FAIR Data Principles to the Registry of Vascular Anomalies (VASCA).
Proceedings of the dHealth 2020 - Biomedical Informatics for Health and Care, 2020

FAIR Data Management to Access Patient Data.
Proceedings of the DaMaLOS, 2020

2018
Wikidata as an intuitive resource towards semantic data modeling in data FAIRification.
Proceedings of the 11th International Conference Semantic Web Applications and Tools for Life Sciences, 2018

OSSE Goes FAIR - Implementation of the FAIR Data Principles for an Open-Source Registry for Rare Diseases.
Proceedings of the German Medical Data Sciences: A Learning Healthcare System, 2018

2017
Overview of a Suite of Tools and Training Material for Implementing FAIR Data Principles.
Proceedings of the 10th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences (SWAT4LS 2017), 2017

Semantic Knowledge Graph Network Features for Drug Repurposing.
Proceedings of the 10th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences (SWAT4LS 2017), 2017

The FAIRification of Data and the Potential of FAIR Resources Demonstrated, in Practice, at the Rome Bring Your Own Data Workshop.
Proceedings of the 10th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences (SWAT4LS 2017), 2017

2016
Registries of Domain-Relevant Semantic Reference Models Help Bootstrap Interoperability in Domains with Fragmented Data Resources.
Proceedings of the 9th International Conference Semantic Web Applications and Tools for Life Sciences, 2016

The Organisation of Bring Your Own Data (BYOD) Workshops to Make Life Science Data Linkable at the Source.
Proceedings of the 9th International Conference Semantic Web Applications and Tools for Life Sciences, 2016

2015
Nanopublications for exposing experimental data in the life-sciences: a Huntington's Disease case study.
J. Biomed. Semant., 2015

Finding Novel Associations Across Domains Using Linked Data: a Case Study on Genetic Variants Disrupting Transcription Start Sites.
Proceedings of the 8th Semantic Web Applications and Tools for Life Sciences International Conference, 2015

Multidisciplinary Collaboration to Facilitate Hypotheses Generation in Huntington's Disease.
Proceedings of the 11th IEEE International Conference on e-Science, 2015

2014
Recent applications of web semantics in eLifeScience.
J. Web Semant., 2014

Explain your data by Concept Profile Analysis Web Services.
F1000Research, 2014

Preserving sequence annotations across reference sequences.
J. Biomed. Semant., 2014

Structuring research methods and data with the research object model: genomics workflows as a case study.
J. Biomed. Semant., 2014

Bring Your Own Data Workshops: A Mechanism to Aid Data Owners to Comply with Linked Data Best Practices.
Proceedings of the 7th International Workshop on Semantic Web Applications and Tools for Life Sciences, 2014

Genome Annotation using Nanopublications: An Approach to Interoperability of Genetic Data.
Proceedings of the 7th International Workshop on Semantic Web Applications and Tools for Life Sciences, 2014

A Nanopublishing Architecture for Biomedical Data.
Proceedings of the 8th International Conference on Practical Applications of Computational Biology & Bioinformatics, 2014

2013
Nanopublications for Exposing Experimental Data in the Life-sciences: A Huntington's Disease Case Study.
Proceedings of the 6th International Workshop on Semantic Web Applications and Tools for Life Sciences, 2013

Workflows and Services for Concept Profile Generation.
Proceedings of the 6th International Workshop on Semantic Web Applications and Tools for Life Sciences, 2013

2012
Data Publishing Using Nanopublications.
Tiny Trans. Comput. Sci., 2012

Best Practices for Workflow Design: How to Prevent Workflow Decay.
Proceedings of the 5th International Workshop on Semantic Web Applications and Tools for Life Sciences, 2012

Towards Computational Evaluation of Evidence for Scientific Assertions with Nanopublications.
Proceedings of the 5th International Workshop on Semantic Web Applications and Tools for Life Sciences, 2012

RO-Manager: A Tool for Creating and Manipulating Research Objects to Support Reproducibility and Reuse in Sciences.
Proceedings of the Second International Workshop on Linked Science 2012, 2012

Opening new gateways to workflows for life scientists.
Proceedings of the HealthGrid Applications and Technologies Meet Science Gateways for Life Sciences, 2012


Why workflows break - Understanding and combating decay in Taverna workflows.
Proceedings of the 8th IEEE International Conference on E-Science, 2012

2011
Workflow forever: semantic web semantic models and tools for preserving and digitally publishing computational experiments.
Proceedings of the 4th International Workshop on Semantic Web Applications and Tools for the Life Sciences, 2011

Towards the Preservation of Scientific Workflows.
Proceedings of the 8th International Conference on Digital Preservation, 2011

2010
Semantic Disclosure in an e-Science Environment.
Proceedings of the Semantic e-Science, 2010

myExperiment: a repository and social network for the sharing of bioinformatics workflows.
Nucleic Acids Res., 2010

BioCatalogue: a universal catalogue of web services for the life sciences.
Nucleic Acids Res., 2010

The AIDA Toolkit - a Tool for Users and Developers.
Proceedings of the Workshop on Semantic Web Applications and Tools for Life Sciences, 2010

A Linked Data Approach to Sharing Workflows and Workflow Results.
Proceedings of the Leveraging Applications of Formal Methods, Verification, and Validation, 2010


2009
Structuring and extracting knowledge for the support of hypothesis generation in molecular biology.
BMC Bioinform., 2009

Analysing Scientific Workflows: Why Workflows Not Only Connect Web Services.
Proceedings of the 2009 IEEE Congress on Services, Part I, 2009

New interactions with workflow systems.
Proceedings of the ECCE 2009 - Designing beyond the Product - Understanding Activity and User Experience in Ubiquitous Environments, European Conference on Cognitive Ergonomics 2009, Helsinki, Finland, September 30, 2009

2008
Structuring Mined Knowledge for the Support of Hypothesis Generation in Molecular Biology.
Proceedings of the Workshop on Semantic Web Applications and Tools for Life Sciences ( SWAT4LS ) Edinburgh, 2008

Data Lineage Model for Taverna Workflows with Lightweight Annotation Requirements.
Proceedings of the Provenance and Annotation of Data and Processes, 2008

2007
VLAM-G: Interactive data driven workflow engine for Grid-enabled resources.
Sci. Program., 2007

Taking the example of computer systems engineering for the analysis of biological cell systems.
Biosyst., 2007

A semantic web approach applied to integrative bioinformatics experimentation: a biological use case with genomics data.
Bioinform., 2007

A Survey of Requirements for Automated Reasoning Services for Bio-Ontolgies in OWL.
Proceedings of the OWLED 2007 Workshop on OWL: Experiences and Directions, 2007

2006
Using Semantic Web Tools to Integrate Experimental Measurement Data on Our Own Terms.
Proceedings of the On the Move to Meaningful Internet Systems 2006: OTM 2006 Workshops, 2006

Interactive Workflows in a Virtual Laboratory for e-Bioscience: The SigWin-Detector Tool for Gene Expression Analysis.
Proceedings of the Second International Conference on e-Science and Grid Technologies (e-Science 2006), 2006


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