Marco Antoniotti
Orcid: 0000-0002-2823-6838
According to our database1,
Marco Antoniotti
authored at least 63 papers
between 1995 and 2023.
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Bibliography
2023
LACE 2.0: an interactive R tool for the inference and visualization of longitudinal cancer evolution.
BMC Bioinform., December, 2023
A Bayesian method to infer copy number clones from single-cell RNA and ATAC sequencing.
PLoS Comput. Biol., November, 2023
Unity is strength: Improving the detection of adversarial examples with ensemble approaches.
Neurocomputing, October, 2023
2022
LACE: Inference of cancer evolution models from longitudinal single-cell sequencing data.
J. Comput. Sci., 2022
J-SPACE: a Julia package for the simulation of spatial models of cancer evolution and of sequencing experiments.
BMC Bioinform., 2022
2021
VERSO: A comprehensive framework for the inference of robust phylogenies and the quantification of intra-host genomic diversity of viral samples.
Patterns, 2021
EAD: an ensemble approach to detect adversarial examples from the hidden features of deep neural networks.
CoRR, 2021
Optimal Control of a Discrete Time Stochastic Model of an Epidemic Spreading in Arbitrary Networks.
Proceedings of the Annual Modeling and Simulation Conference, 2021
2020
The Influence of Nutrients Diffusion on a Metabolism-driven Model of a Multi-cellular System.
Fundam. Informaticae, 2020
CoRR, 2020
Proceedings of the Machine Learning, Optimization, and Data Science, 2020
Proceedings of the 2020 International Joint Conference on Neural Networks, 2020
Why You Cannot (Yet) Write an "Interval Arithmetic" Library in Common Lisp ... or: Hammering Some Sense into : ieee-floating-point.
Proceedings of the 13th European Lisp Symposium (ELS 2020), 2020
Proceedings of the IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology, 2020
Proceedings of the Italian Workshop on Explainable Artificial Intelligence co-located with 19th International Conference of the Italian Association for Artificial Intelligence, 2020
2019
Efficient computational strategies to learn the structure of probabilistic graphical models of cumulative phenomena.
J. Comput. Sci., 2019
Learning mutational graphs of individual tumour evolution from single-cell and multi-region sequencing data.
BMC Bioinform., 2019
cyTRON and cyTRON/JS: Two Cytoscape-Based Applications for the Inference of Cancer Evolution Models.
Proceedings of the Computational Intelligence Methods for Bioinformatics and Biostatistics, 2019
2018
Integration of transcriptomic data and metabolic networks in cancer samples reveals highly significant prognostic power.
J. Biomed. Informatics, 2018
Proceedings of the Artificial Life and Evolutionary Computation - 13th Italian Workshop, 2018
Proceedings of the Computational Science - ICCS 2018, 2018
2017
Learning mutational graphs of individual tumor evolution from multi-sample sequencing data.
CoRR, 2017
Learning the Probabilistic Structure of Cumulative Phenomena with Suppes-Bayes Causal Networks.
CoRR, 2017
2016
Int. J. Data Min. Bioinform., 2016
CoRR, 2016
BMC Bioinform., 2016
TRONCO: an R package for the inference of cancer progression models from heterogeneous genomic data.
Bioinform., 2016
Parallel implementation of efficient search schemes for the inference of cancer progression models.
Proceedings of the 2016 IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology, 2016
2015
BMC Bioinform., 2015
Bioinform., 2015
2014
Combined analysis of chromosomal instabilities and gene expression for colon cancer progression inference.
J. Clin. Bioinform., 2014
Stochastic Hybrid Automata with delayed transitions to model biochemical systems with delays.
Inf. Comput., 2014
Investigating the Role of Network Topology and Dynamical Regimes on the Dynamics of a Cell Differentiation Model.
Proceedings of the Advances in Artificial Life and Evolutionary Computation, 2014
2013
Int. J. Comput. Math., 2013
Proceedings of the Proceedings Wivace 2013, 2013
Analysis of the spatial and dynamical properties of a multiscale model of intestinal crypts.
Proceedings of the Proceedings Wivace 2013, 2013
GeStoDifferent: a Cytoscape plugin for the generation and the identification of gene regulatory networks describing a stochastic cell differentiation process.
Bioinform., 2013
Proceedings of the Artificial Intelligence in Medicine, 2013
2012
IEEE ACM Trans. Comput. Biol. Bioinform., 2012
Proceedings of the Proceedings First International Workshop on Hybrid Systems and Biology, 2012
Poster: Characterization of distinguishing regions for Renal Cell Carcinoma discrimination.
Proceedings of the IEEE 2nd International Conference on Computational Advances in Bio and Medical Sciences, 2012
Analysis of Correlation Structures in Renal Cell Carcinoma Patient Data.
Proceedings of the BIOINFORMATICS 2012 - Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms, Vilamoura, Algarve, Portugal, 1, 2012
2011
A comparison of machine learning techniques for survival prediction in breast cancer.
BioData Min., 2011
2010
An ontological modeling approach to cerebrovascular disease studies: The NEUROWEB case.
J. Biomed. Informatics, 2010
Comput. Oper. Res., 2010
Identification of Individualized Feature Combinations for Survival Prediction in Breast Cancer: A Comparison of Machine Learning Techniques.
Proceedings of the Evolutionary Computation, 2010
2009
Ontological modeling at a domain interface: bridging clinical and biomolecular knowledge.
Knowl. Eng. Rev., 2009
2008
Proceedings of the 1st European Lisp Symposium (ELS'08), 2008
2007
From Bytes to Bedside: Data Integration and Computational Biology for Translational Cancer Research.
PLoS Comput. Biol., 2007
Proceedings of the Knowledge-Based Intelligent Information and Engineering Systems, 2007
Proceedings of the Bioinformatics Research and Applications, Third International Symposium, 2007
Ontological Modelling for Neurovascular Disease Study: Issues in the Adoption of Description Logic.
Proceedings of the 2007 International Workshop on Description Logics (DL2007), 2007
2005
Proceedings of the Computer Aided Verification, 17th International Conference, 2005
2004
Taming the complexity of biochemical models through bisimulation and collapsing: theory and practice.
Theor. Comput. Sci., 2004
2003
Foundations of a Query and Simulation System for the Modeling of Biochemical and Biological Processes.
Proceedings of the 8th Pacific Symposium on Biocomputing, 2003
Proceedings of the Computational Methods in Systems Biology, First International Workshop, 2003
2002
XS-systems: eXtended S-Systems and Algebraic Differential Automata for Modeling Cellular Behavior.
Proceedings of the High Performance Computing, 2002
2001
Proceedings of the 40th IEEE Conference on Decision and Control, 2001
1997
SHIFT and SMART-AHS: A Language for Hybrid System Engineering Modeling and Simulation.
Proceedings of the Conference on Domain-Specific Languages, 1997
1995
Synthesis and Verification of Controllers for Robotics and Manufacturing Devices with Temporal Logic and the "Control-D" System.
PhD thesis, 1995
Descrete Events Models + Temporal Logic = Supervisory Controller: Automatic Synthesis of Locomotion Controllers.
Proceedings of the 1995 International Conference on Robotics and Automation, 1995