Márcio Dorn

Orcid: 0000-0001-8534-3480

According to our database1, Márcio Dorn authored at least 76 papers between 2008 and 2024.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

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Bibliography

2024
The use of gene expression datasets in feature selection research: 20 years of inherent bias?
WIREs Data. Mining. Knowl. Discov., 2024

Enhancing classification with hybrid feature selection: A multi-objective genetic algorithm for high-dimensional data.
Expert Syst. Appl., 2024

Analysis and comparison of feature selection methods towards performance and stability.
Expert Syst. Appl., 2024

A Multiobjective Evolutionary Algorithm for Colon Cancer Biomarkers Identification on Gene Expression Data.
Proceedings of the IEEE Conference on Computational Intelligence in Bioinformatics and Computational Biology, 2024

2023
An evolutionary algorithm based on parsimony for the multiobjective phylogenetic network inference problem.
Appl. Soft Comput., May, 2023

NIAS-Server 2.0: A versatile complementary tool for structural biology studies.
J. Comput. Chem., 2023

Implicit propagation of directly addressed grids in lattice Boltzmann methods.
Concurr. Comput. Pract. Exp., 2023

A Fitness-Based Migration Policy for Biased Random-Key Genetic Algorithms.
Proceedings of the Applications of Evolutionary Computation - 26th European Conference, 2023

Benchmark Problems on GPU: Accelerating Experiments on Metaheuristics.
Proceedings of the IEEE Congress on Evolutionary Computation, 2023

Multi-Objective Wrapper Differential Evolution with Guided Initial Population for Feature Selection.
Proceedings of the IEEE Congress on Evolutionary Computation, 2023

2022
Gene Expression Variation Analysis (GEVA): A new R package to evaluate variations in differential expression in multiple biological conditions.
J. Biomed. Informatics, 2022

A Multi-population Schema Designed for Biased Random-Key Genetic Algorithms on Continuous Optimisation Problems.
Proceedings of the Intelligent Systems - 11th Brazilian Conference, 2022

2021
Comparison of machine learning techniques to handle imbalanced COVID-19 CBC datasets.
PeerJ Comput. Sci., 2021

Modifying the catalytic preference of alpha-amylase toward n-alkanes for bioremediation purposes using in silico strategies.
J. Comput. Chem., 2021

Benchmarking and Testing Machine Learning Approaches with BARRA: CuRDa, a Curated RNA-Seq Database for Cancer Research.
J. Comput. Biol., 2021

Relevance aggregation for neural networks interpretability and knowledge discovery on tabular data.
Inf. Sci., 2021

A Study on Shape-Dependent Settling of Single Particles with Equal Volume Using Surface Resolved Simulations.
Comput., 2021

A multi-objective approach for the protein structure prediction problem.
Proceedings of the 40th International Conference of the Chilean Computer Science Society, 2021

Evaluating the Success-History Based Adaptive Differential Evolution in the Protein Structure Prediction Problem.
Proceedings of the Applications of Evolutionary Computation, 2021

Optimisation of Cancer Status Prediction Pipelines using Bio-Inspired Computing.
Proceedings of the IEEE Congress on Evolutionary Computation, 2021

2020
A multi-population memetic algorithm for the 3-D protein structure prediction problem.
Swarm Evol. Comput., 2020

Exploring the high selectivity of 3-D protein structures using distributed memetic algorithms.
J. Comput. Sci., 2020

Hemogram Data as a Tool for Decision-making in COVID-19 Management: Applications to Resource Scarcity Scenarios.
CoRR, 2020

Neuroevolution of Neural Network Architectures Using CoDeepNEAT and Keras.
CoRR, 2020

Solving fluid flow domain identification problems with adjoint lattice Boltzmann methods.
Comput. Math. Appl., 2020

ConfID: an analytical method for conformational characterization of small molecules using molecular dynamics trajectories.
Bioinform., 2020

Differential Evolution Multi-Objective for Tertiary Protein Structure Prediction.
Proceedings of the Applications of Evolutionary Computation - 23rd European Conference, 2020

Determining the Conformational Flexibility of Disaccharides with an Adaptive Differential Evolution Approach.
Proceedings of the IEEE Congress on Evolutionary Computation, 2020

Multi-Objective Differential Evolution Algorithms for the Protein Structure Prediction Problem.
Proceedings of the IEEE Congress on Evolutionary Computation, 2020

A dynamic evolutionary multi-agent system to predict the 3D structure of proteins.
Proceedings of the IEEE Congress on Evolutionary Computation, 2020

2019
A Memetic Algorithm Based on an NSGA-II Scheme for Phylogenetic Tree Inference.
IEEE Trans. Evol. Comput., 2019

A biased random key genetic algorithm for the protein-ligand docking problem.
Soft Comput., 2019

CuMiDa: An Extensively Curated Microarray Database for Benchmarking and Testing of Machine Learning Approaches in Cancer Research.
J. Comput. Biol., 2019

Neuroevolution as a tool for microarray gene expression pattern identification in cancer research.
J. Biomed. Informatics, 2019

A Knowledge Based Self-Adaptive Differential Evolution Algorithm for Protein Structure Prediction.
Proceedings of the Computational Science - ICCS 2019, 2019

A Self-adaptive Local Search Coordination in Multimeme Memetic Algorithm for Molecular Docking.
Proceedings of the Computational Science - ICCS 2019, 2019

A Multi-objective Swarm-Based Algorithm for the Prediction of Protein Structures.
Proceedings of the Computational Science - ICCS 2019, 2019

A Knowledge Based Differential Evolution Algorithm for Protein Structure Prediction.
Proceedings of the Applications of Evolutionary Computation, 2019

A Biased Random Key Genetic Algorithm with Local Search Chains for Molecular Docking.
Proceedings of the Applications of Evolutionary Computation, 2019

Rosetta Ligand-Protein Docking with Self-Adaptive Differential Evolution.
Proceedings of the 19th IEEE International Conference on Bioinformatics and Bioengineering, 2019

2018
A Memetic Algorithm for 3D Protein Structure Prediction Problem.
IEEE ACM Trans. Comput. Biol. Bioinform., 2018

Everyone Is a Protagonist: Residue Conformational Preferences in High-Resolution Protein Structures.
J. Comput. Biol., 2018

Three-dimensional protein structure prediction based on memetic algorithms.
Comput. Oper. Res., 2018

A multi-objective gene clustering algorithm guided by apriori biological knowledge with intensification and diversification strategies.
BioData Min., 2018

Understanding the Relationship Between Decision and Objective Space in the Multi-Objective Phylogenetic Inference Problem.
Proceedings of the 2018 IEEE Congress on Evolutionary Computation, 2018

Performance Comparison of Multi-Objective Local Search Strategies to Infer Phylogenetic Trees.
Proceedings of the 2018 IEEE Congress on Evolutionary Computation, 2018

Microarray Classification and Gene Selection with FS-NEAT.
Proceedings of the 2018 IEEE Congress on Evolutionary Computation, 2018

A Knowledge-Based Artificial Bee Colony Algorithm for the 3-D Protein Structure Prediction Problem.
Proceedings of the 2018 IEEE Congress on Evolutionary Computation, 2018

A Genetic Algorithm Based on Restricted Tournament Selection for the 3D-PSP Problem.
Proceedings of the 2018 IEEE Congress on Evolutionary Computation, 2018

2017
NIAS-Server: Neighbors Influence of Amino acids and Secondary Structures in Proteins.
J. Comput. Biol., 2017

NEAT-FLEX: Predicting the conformational flexibility of amino acids using neuroevolution of augmenting topologies.
J. Bioinform. Comput. Biol., 2017

Evaluating the use of local search strategies for a memetic algorithm for the protein-ligand docking problem.
Proceedings of the 36th International Conference of the Chilean Computer Science Society, 2017

Using local search strategies to improve the performance of NSGA-II for the Multi-Criteria Minimum Spanning Tree problem.
Proceedings of the 2017 IEEE Congress on Evolutionary Computation, 2017

SADE-SPL: A Self-Adapting Differential Evolution algorithm with a loop Structure Pattern Library for the PSP problem.
Proceedings of the 2017 IEEE Congress on Evolutionary Computation, 2017

An evolutionary multi-agent algorithm to explore the high degree of selectivity in three-dimensional protein structures.
Proceedings of the 2017 IEEE Congress on Evolutionary Computation, 2017

D-BRKGA: A Distributed Biased Random-Key Genetic Algorithm.
Proceedings of the 2017 IEEE Congress on Evolutionary Computation, 2017

2016
Evaluation of a combined energy fitness function for a distributed memetic algorithm to tackle the 3D protein structure prediction problem.
Proceedings of the 35th International Conference of the Chilean Computer Science Society, 2016

Predicting protein structural features with NeuroEvolution of Augmenting Topologies.
Proceedings of the 2016 International Joint Conference on Neural Networks, 2016

Improving protein tertiary structure prediction with conformational propensities of amino acid residues.
Proceedings of the IEEE Congress on Evolutionary Computation, 2016

2015
APL: An angle probability list to improve knowledge-based metaheuristics for the three-dimensional protein structure prediction.
Comput. Biol. Chem., 2015

A Memetic Algorithm for Protein Structure Prediction based on Conformational Preferences of Aminoacid Residues.
Proceedings of the Genetic and Evolutionary Computation Conference, 2015

2014
MOIRAE: A computational strategy to extract and represent structural information from experimental protein templates.
Soft Comput., 2014

Three-dimensional protein structure prediction: Methods and computational strategies.
Comput. Biol. Chem., 2014

2013
An interval-based algorithm to represent conformational states of experimentally determined polypeptide templates and fast prediction of approximated 3D protein structures.
Int. J. Bioinform. Res. Appl., 2013

A molecular dynamics and knowledge-based computational strategy to predict native-like structures of polypeptides.
Expert Syst. Appl., 2013

A cluster-DEE-based strategy to empower protein design.
Expert Syst. Appl., 2013

A knowledge-based genetic algorithm to predict three-dimensional structures of polypeptides.
Proceedings of the IEEE Congress on Evolutionary Computation, 2013

2012
A GMDH polynomial neural network-based method to predict approximate three-dimensional structures of polypeptides.
Expert Syst. Appl., 2012

Hardware implementation of GMDH-type artificial neural networks and its use to predict approximate three-dimensional structures of proteins.
Proceedings of the 7th International Workshop on Reconfigurable and Communication-Centric Systems-on-Chip (ReCoSoC), 2012

2011
Combining Machine Learning and Optimization Techniques to Determine 3-D Structures of Polypeptides.
Proceedings of the IJCAI 2011, 2011

A hybrid genetic algorithm for the 3-D protein structure prediction problem using a path-relinking strategy.
Proceedings of the IEEE Congress on Evolutionary Computation, 2011

2010
Mining the Protein Data Bank with CReF to predict approximate 3-D structures of polypeptides.
Int. J. Data Min. Bioinform., 2010

A3N: An artificial neural network n-gram-based method to approximate 3-D polypeptides structure prediction.
Expert Syst. Appl., 2010

2008
A Hybrid Method for the Protein Structure Prediction Problem.
Proceedings of the Advances in Bioinformatics and Computational Biology, 2008

Parallel Verified Linear System Solver for Uncertain Input Data.
Proceedings of the 20th International Symposium on Computer Architecture and High Performance Computing, 2008

CReF: a central-residue-fragment-based method for predicting approximate 3-D polypeptides structures.
Proceedings of the 2008 ACM Symposium on Applied Computing (SAC), 2008


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