Marc Robinson-Rechavi
Orcid: 0000-0002-3437-3329Affiliations:
- University of Lausanne, Department of Ecology and Evolution, Switzerland
According to our database1,
Marc Robinson-Rechavi
authored at least 42 papers
between 1999 and 2023.
Collaborative distances:
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Bibliography
2023
Boosting interoperability: towards an increasingly reusable bioinformatics knowledge base.
CoRR, 2023
2022
Rhythmicity is linked to expression cost at the protein level but to expression precision at the mRNA level.
PLoS Comput. Biol., September, 2022
Bio-SODA UX: enabling natural language question answering over knowledge graphs with user disambiguation.
Distributed Parallel Databases, 2022
2021
The Bgee suite: integrated curated expression atlas and comparative transcriptomics in animals.
Nucleic Acids Res., 2021
OMAmer: tree-driven and alignment-free protein assignment to subfamilies outperforms closest sequence approaches.
Bioinform., 2021
Bio-SODA: Enabling Natural Language Question Answering over Knowledge Graphs without Training Data.
Proceedings of the SSDBM 2021: 33rd International Conference on Scientific and Statistical Database Management, 2021
2020
Methods detecting rhythmic gene expression are biologically relevant only for strong signal.
PLoS Comput. Biol., 2020
Quality Matters: Biocuration Experts on the Impact of Duplication and Other Data Quality Issues in Biological Databases.
Genom. Proteom. Bioinform., 2020
2019
PLoS Comput. Biol., 2019
Database J. Biol. Databases Curation, 2019
OncoMX: an Integrated Cancer Mutation and Expression Knowledgebase for Biomarker Evaluation and Discovery.
Proceedings of the AMIA 2019, 2019
2017
Bioinform., 2017
Briefings Bioinform., 2017
2016
Tissue-Specificity of Gene Expression Diverges Slowly between Orthologs, and Rapidly between Paralogs.
PLoS Comput. Biol., 2016
BgeeDB, an R package for retrieval of curated expression datasets and for gene list expression localization enrichment tests.
F1000Research, 2016
IQRray, a new method for Affymetrix microarray quality control, and the homologous organ conservation score, a new benchmark method for quality control metrics.
Bioinform., 2016
2015
The Confidence Information Ontology: a step towards a standard for asserting confidence in annotations.
Database J. Biol. Databases Curation, 2015
2014
Selectome update: quality control and computational improvements to a database of positive selection.
Nucleic Acids Res., 2014
BMC Bioinform., 2014
Unification of multi-species vertebrate anatomy ontologies for comparative biology in Uberon.
J. Biomed. Semant., 2014
Optimization strategies for fast detection of positive selection on phylogenetic trees.
Bioinform., 2014
2013
Database J. Biol. Databases Curation, 2013
DATABASE, <i>The Journal of Biological Databases and Curation</i>, is now the official journal of the International Society for Biocuration.
Database J. Biol. Databases Curation, 2013
2012
Resolving the Ortholog Conjecture: Orthologs Tend to Be Weakly, but Significantly, More Similar in Function than Paralogs.
PLoS Comput. Biol., 2012
Correcting for the bias due to expression specificity improves the estimation of constrained evolution of expression between mouse and human.
Bioinform., 2012
Bioinform., 2012
Recent advances in biocuration: Meeting Report from the fifth International Biocuration Conference.
Database J. Biol. Databases Curation, 2012
Proceedings of the 26th IEEE International Parallel and Distributed Processing Symposium Workshops & PhD Forum, 2012
gcodeml: A Grid-enabled Tool for Detecting Positive Selection in Biological Evolution.
Proceedings of the HealthGrid Applications and Technologies Meet Science Gateways for Life Sciences, 2012
2011
Meta-analysis of estrogen response in MCF-7 distinguishes early target genes involved in signaling and cell proliferation from later target genes involved in cell cycle and DNA repair.
BMC Syst. Biol., 2011
Conceptual framework and pilot study to benchmark phylogenomic databases based on reference gene trees.
Briefings Bioinform., 2011
2010
Homolonto: generating homology relationships by pairwise alignment of ontologies and application to vertebrate anatomy.
Bioinform., 2010
Proceedings of the Healthgrid Applications and Core Technologies, 2010
2009
2008
Proceedings of the Data Integration in the Life Sciences, 5th International Workshop, 2008
2007
A protein interaction atlas for the nuclear receptors: properties and quality of a hub-based dimerisation network.
BMC Syst. Biol., 2007
2004
Nucleic Acids Res., 2004
2002
2000
Bioinform., 2000
1999