Marc Baaden

Orcid: 0000-0001-6472-0486

According to our database1, Marc Baaden authored at least 36 papers between 2003 and 2024.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

Legend:

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In proceedings 
Article 
PhD thesis 
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Links

On csauthors.net:

Bibliography

2024
A Perspective on the Prospective Use of AI in Protein Structure Prediction.
J. Chem. Inf. Model., January, 2024

From complex data to clear insights: visualizing molecular dynamics trajectories.
Frontiers Bioinform., 2024

2023
State of the Art of Molecular Visualization in Immersive Virtual Environments.
Comput. Graph. Forum, September, 2023

A brief history of visualizing membrane systems in molecular dynamics simulations.
Frontiers Bioinform., May, 2023

2022
Deep inside molecules - digital twins at the nanoscale.
Virtual Real. Intell. Hardw., 2022

Design - a new way to look at old molecules.
J. Integr. Bioinform., 2022

Design X Bioinformatics: a community-driven initiative to connect bioinformatics and design.
J. Integr. Bioinform., 2022

Fast and Interactive Positioning of Proteins within Membranes.
Algorithms, 2022

2021
Lessons learned from urgent computing in Europe: Tackling the COVID-19 pandemic.
Proc. Natl. Acad. Sci. USA, 2021

2019
QuickSES: A Library for Fast Computation of Solvent Excluded Surfaces.
Proceedings of the 2nd Workshop on Molecular Graphics and Visual Analysis of Molecular Data, 2019

2018
Web Molecular Graphics: Emerging Technologies & Standards (NII Shonan Meeting 2018-19).
NII Shonan Meet. Rep., 2018

Ten simple rules to create a serious game, illustrated with examples from structural biology.
PLoS Comput. Biol., 2018

Semantics for an Integrative and Immersive Pipeline Combining Visualization and Analysis of Molecular Data.
J. Integr. Bioinform., 2018

From Virtual Reality to Immersive Analytics in Bioinformatics.
J. Integr. Bioinform., 2018

MinOmics, an Integrative and Immersive Tool for Multi-Omics Analysis.
J. Integr. Bioinform., 2018

2017
10 simple rules to create a serious game, illustrated with examples from structural biology.
CoRR, 2017

Visualization of Biomolecular Structures: State of the Art Revisited.
Comput. Graph. Forum, 2017

Molecular Visualization of Computational Biology Data: A Survey of Surveys.
Proceedings of the 19th Eurographics Conference on Visualization, 2017

2016
Visual Analysis of Biomolecular Cavities: State of the Art.
Comput. Graph. Forum, 2016

2015
Epock: rapid analysis of protein pocket dynamics.
Bioinform., 2015

Visualization of Biomolecular Structures: State of the Art.
Proceedings of the 17th Eurographics Conference on Visualization, 2015

2014
A Cooperative Mechanism of Clotrimazoles in P450 Revealed by the Dissociation Picture of Clotrimazole from P450.
J. Chem. Inf. Model., 2014

UnityMol: Interactive scientific visualization for integrative biology.
Proceedings of the 4th IEEE Symposium on Large Data Analysis and Visualization, 2014

Content-guided Navigation in Multimeric Molecular Complexes.
Proceedings of the BIOIMAGING 2014, 2014

2013
Formation of Raft-Like Assemblies within Clusters of Influenza Hemagglutinin Observed by MD Simulations.
PLoS Comput. Biol., 2013

Interactive Molecular Dynamics: Scaling up to Large Systems.
Proceedings of the International Conference on Computational Science, 2013

2011
GPU-accelerated atom and dynamic bond visualization using hyperballs: A unified algorithm for balls, sticks, and hyperboloids.
J. Comput. Chem., 2011

GPU-powered tools boost molecular visualization.
Briefings Bioinform., 2011

2010
How Cations Can Assist DNase I in DNA Binding and Hydrolysis.
PLoS Comput. Biol., 2010

Multi-Resolution Approach for Interactively Locating Functionally Linked Ion Binding Sites by Steering Small Molecules into Electrostatic Potential Maps Using a Haptic Device.
Proceedings of the Biocomputing 2010: Proceedings of the Pacific Symposium, 2010

Simulations numériques de systèmes biologiques complexes : dynamique, structure et fonction de transporteurs, canaux et enzymes. (Numerical simulations of complex biological systems: dynamics, structure and function of transporters, channels and enzymes).
, 2010

2009
Complex molecular assemblies at hand via interactive simulations.
J. Comput. Chem., 2009

2008
A VR framework for interacting with molecular simulations.
Proceedings of the ACM Symposium on Virtual Reality Software and Technology, 2008

From Interactive to Immersive Molecular Dynamics.
Proceedings of the Fifth Workshop on Virtual Reality Interactions and Physical Simulations, 2008

2007
Atomistic Modeling of the Membrane-Embedded Synaptic Fusion Complex: a Grand Challenge Project on the DEISA HPC Infrastructure.
Proceedings of the Parallel Computing: Architectures, 2007

2003
Etudes de molécules extractantes en solution et aux interfaces liquide-liquide : aspects structuraux et mécanistiques des effets de synergie.
PhD thesis, 2003


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