Marc A. Suchard

Orcid: 0000-0001-9818-479X

According to our database1, Marc A. Suchard authored at least 49 papers between 2005 and 2024.

Collaborative distances:

Timeline

Legend:

Book 
In proceedings 
Article 
PhD thesis 
Dataset
Other 

Links

On csauthors.net:

Bibliography

2024
Many-core algorithms for high-dimensional gradients on phylogenetic trees.
Bioinform., February, 2024

Massive Parallelization of Massive Sample-Size Survival Analysis.
J. Comput. Graph. Stat., 2024

Comparing penalization methods for linear models on large observational health data.
J. Am. Medical Informatics Assoc., 2024

2023
A topology-marginal composite likelihood via a generalized phylogenetic pruning algorithm.
Algorithms Mol. Biol., December, 2023

Padé approximant meets federated learning: A nearly lossless, one-shot algorithm for evidence synthesis in distributed research networks with rare outcomes.
J. Biomed. Informatics, September, 2023

Reproducible variability: assessing investigator discordance across 9 research teams attempting to reproduce the same observational study.
J. Am. Medical Informatics Assoc., April, 2023

Accelerating Bayesian inference of dependency between mixed-type biological traits.
PLoS Comput. Biol., 2023

An explainable machine learning-based phenomapping strategy for adaptive predictive enrichment in randomized clinical trials.
npj Digit. Medicine, 2023

Health-Analytics Data to Evidence Suite (HADES): Open-Source Software for Observational Research.
Proceedings of the MEDINFO 2023 - The Future Is Accessible, 2023

2022
From viral evolution to spatial contagion: a biologically modulated Hawkes model.
Bioinform., 2022

Reproducibility in comparative effectiveness and safety of ACE inhibitors and thiazides for modified monotherapy treatment criteria.
Proceedings of the AMIA 2022, 2022

2021
Scalable Bayesian inference for self-excitatory stochastic processes applied to big American gunfire data.
Stat. Comput., 2021

Pandemic velocity: Forecasting COVID-19 in the US with a machine learning & Bayesian time series compartmental model.
PLoS Comput. Biol., 2021

Scalable Algorithms for Large Competing Risks Data.
J. Comput. Graph. Stat., 2021

Massive Parallelization Boosts Big Bayesian Multidimensional Scaling.
J. Comput. Graph. Stat., 2021

Erratum to: Large-Scale Evidence Generation and Evaluation across a Network of Databases (LEGEND): Assessing Validity Using Hypertension as a Case Study.
J. Am. Medical Informatics Assoc., 2021

A standardized analytics pipeline for reliable and rapid development and validation of prediction models using observational health data.
Comput. Methods Programs Biomed., 2021

A phylogenetic approach for weighting genetic sequences.
BMC Bioinform., 2021

2020
A Fast and Scalable Implementation Method for Competing Risks Data with the R Package fastcmprsk.
R J., 2020

Estimating effective population size changes from preferentially sampled genetic sequences.
PLoS Comput. Biol., 2020

Principles of Large-scale Evidence Generation and Evaluation across a Network of Databases (LEGEND).
J. Am. Medical Informatics Assoc., 2020

Large-scale evidence generation and evaluation across a network of databases (LEGEND): assessing validity using hypertension as a case study.
J. Am. Medical Informatics Assoc., 2020

Incorporating heterogeneous sampling probabilities in continuous phylogeographic inference - Application to H5N1 spread in the Mekong region.
Bioinform., 2020

Evaluation of Large-scale Propensity Score Modeling and Covariate Balance on Potential Unmeasured Confounding in Observational Research.
Proceedings of the AMIA 2020, 2020

2019
BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis.
PLoS Comput. Biol., 2019

2018
Design and implementation of a standardized framework to generate and evaluate patient-level prediction models using observational healthcare data.
J. Am. Medical Informatics Assoc., 2018

2017
Bayesian phylogeography of influenza A/H3N2 for the 2014-15 season in the United States using three frameworks of ancestral state reconstruction.
PLoS Comput. Biol., 2017

Virus genomes reveal factors that spread and sustained the Ebola epidemic.
, , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , ,
Nat., 2017

Adaptive MCMC in Bayesian phylogenetics: an application to analyzing partitioned data in BEAST.
Bioinform., 2017

2016
Hierarchical models for multiple, rare outcomes using massive observational healthcare databases.
Stat. Anal. Data Min., 2016

Quantifying and Mitigating the Effect of Preferential Sampling on Phylodynamic Inference.
PLoS Comput. Biol., 2016

2015
Global circulation patterns of seasonal influenza viruses vary with antigenic drift.
Nat., 2015

Observational Health Data Sciences and Informatics (OHDSI): Opportunities for Observational Researchers.
Proceedings of the MEDINFO 2015: eHealth-enabled Health, 2015

2014
The Genealogical Population Dynamics of HIV-1 in a Large Transmission Chain: Bridging within and among Host Evolutionary Rates.
PLoS Comput. Biol., 2014

BEAST 2: A Software Platform for Bayesian Evolutionary Analysis.
PLoS Comput. Biol., 2014

πBUSS: a parallel BEAST/BEAGLE utility for sequence simulation under complex evolutionary scenarios.
BMC Bioinform., 2014

2013
Massive Parallelization of Serial Inference Algorithms for a Complex Generalized Linear Model.
ACM Trans. Model. Comput. Simul., 2013

Reconstruction of an HIV Transmission History in a Bayesian Coalescent Framework.
Proceedings of the International Work-Conference on Bioinformatics and Biomedical Engineering, 2013

2012
A novel empirical mutual information approach to identify co-evolving amino acid positions of influenza A viruses.
Comput. Biol. Chem., 2012

A counting renaissance: combining stochastic mapping and empirical Bayes to quickly detect amino acid sites under positive selection.
Bioinform., 2012

2011
SPREAD: spatial phylogenetic reconstruction of evolutionary dynamics.
Bioinform., 2011

2009
Bayesian Phylogeography Finds Its Roots.
PLoS Comput. Biol., 2009

Two-way Bayesian hierarchical phylogenetic models: An application to the co-evolution of gp120 and gp41 during and after enfuvirtide treatment.
Comput. Stat. Data Anal., 2009

Many-core algorithms for statistical phylogenetics.
Bioinform., 2009

Improving phylogenetic analyses by incorporating additional information from genetic sequence databases.
Bioinform., 2009

2007
cBrother: relaxing parental tree assumptions for Bayesian recombination detection.
Bioinform., 2007

Hot and Cold: Spatial Fluctuation in HIV-1 Recombination Rates.
Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, 2007

2006
BAli-Phy: simultaneous Bayesian inference of alignment and phylogeny.
Bioinform., 2006

2005
Dual multiple change-point model leads to more accurate recombination detection.
Bioinform., 2005


  Loading...