Manabu Torii

Orcid: 0000-0002-4825-0696

According to our database1, Manabu Torii authored at least 48 papers between 2002 and 2023.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

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Bibliography

2023
Task formulation for Extracting Social Determinants of Health from Clinical Narratives.
CoRR, 2023

2019
Extracting health-related causality from twitter messages using natural language processing.
BMC Medical Informatics Decis. Mak., 2019

2018
Using Natural Language Processing to Extract Health-Related Causality from Twitter Messages.
Proceedings of the IEEE International Conference on Healthcare Informatics Workshops, 2018

A Preliminary Study of Clinical Concept Detection Using Syntactic Relations.
Proceedings of the AMIA 2018, 2018

2015
RLIMS-P 2.0: A Generalizable Rule-Based Information Extraction System for Literature Mining of Protein Phosphorylation Information.
IEEE ACM Trans. Comput. Biol. Bioinform., 2015

Risk factor detection for heart disease by applying text analytics in electronic medical records.
J. Biomed. Informatics, 2015

Finding Difficult-to-Disambiguate Words: Towards an Efficient Workflow to Implement Word Sense Disambiguation.
Proceedings of the 2015 International Conference on Healthcare Informatics, 2015

2014
A Generalizable NLP Framework for Fast Development of Pattern-based Biomedical Relation Extraction Systems.
BMC Bioinform., 2014

Detecting concept mentions in biomedical text using hidden Markov model: multiple concept types at once or one at a time?
J. Biomed. Semant., 2014

RLIMS-P: an online text-mining tool for literature-based extraction of protein phosphorylation information.
Database J. Biol. Databases Curation, 2014

iSimp in BioC standard format: enhancing the interoperability of a sentence simplification system.
Database J. Biol. Databases Curation, 2014

2013
A framework for biomedical figure segmentation towards image-based document retrieval.
BMC Syst. Biol., 2013

Pooling annotated corpora for clinical concept extraction.
J. Biomed. Semant., 2013

BioC: a minimalist approach to interoperability for biomedical text processing.
Database J. Biol. Databases Curation, 2013

Text Mining of Protein Phosphorylation Information Using a Generalizable Rule-Based Approach.
Proceedings of the ACM Conference on Bioinformatics, 2013

An Image-Text Approach for Extracting Experimental Evidence of Protein-Protein Interactions in the Biomedical Literature.
Proceedings of the ACM Conference on Bioinformatics, 2013

2012
Coreference analysis in clinical notes: a multi-pass sieve with alternate anaphora resolution modules.
J. Am. Medical Informatics Assoc., 2012

Pathway curation: Application of text-mining tools eGIFT and RLIMS-P.
Proceedings of the 2012 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2012

iSimp: A sentence simplification system for biomedicail text.
Proceedings of the 2012 IEEE International Conference on Bioinformatics and Biomedicine, 2012

Building a classifier for identifying sentences pertaining to disease-drug relationships in tardive dyskinesia.
Proceedings of the 2012 IEEE International Conference on Bioinformatics and Biomedicine, 2012

2011
Using machine learning for concept extraction on clinical documents from multiple data sources.
J. Am. Medical Informatics Assoc., 2011

An exploratory study of a text classification framework for Internet-based surveillance of emerging epidemics.
Int. J. Medical Informatics, 2011

dbOGAP - An Integrated Bioinformatics Resource for Protein O-GlcNAcylation.
BMC Bioinform., 2011

The gene normalization task in BioCreative III.
BMC Bioinform., 2011

Learning from positive and unlabeled documents for automated detection of alternative splicing sentences in medline abstracts.
Proceedings of the 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2011

Human gene/protein synonym dictionary from WikiLinks.
Proceedings of the ACM International Conference on Bioinformatics, 2011

2010
Classification Systems for Bacterial Protein-Protein Interaction Document Retrieval.
Int. J. Comput. Model. Algorithms Medicine, 2010

Document classification for mining host pathogen protein-protein interactions.
Artif. Intell. Medicine, 2010

Evaluating gene/protein name tagging and mapping for article retrieval.
Proceedings of the Fourth International Symposium for Semantic Mining in Biomedicine, 2010

An exploratory study of news article clustering for web-based bio-surveillance.
Proceedings of the ACM International Health Informatics Symposium, 2010

2009
Research Paper: BioTagger-GM: A Gene/Protein Name Recognition System.
J. Am. Medical Informatics Assoc., 2009

Support Vector Machine-Based Mucin-Type O-linked Glycosylation Site Prediction Using Enhanced Sequence Feature Encoding.
Proceedings of the AMIA 2009, 2009

2008
Learning from Positive and Unlabeled Documents for Retrieval of Bacterial Protein-Protein Interaction Literature.
Proceedings of the Linking Literature, Information, and Knowledge for Biology, 2008

Document Classification for Mining Host Pathogen Protein-Protein Interactions.
Proceedings of the 2008 IEEE International Conference on Bioinformatics and Biomedicine, 2008

2007
Sortal Anaphora Resolution in Medline Abstracts.
Comput. Intell., 2007

A comparison study on algorithms of detecting long forms for short forms in biomedical text.
BMC Bioinform., 2007

Classifier Ensemble for Biomedical Document Retrieval.
Proceedings of the Short Paper Proceedings of the 2nd International Symposium on Languages in Biology and Medicine (LBM 2007), 2007

Mapping Gene/Protein Names in Free Text to Biomedical Databases.
Proceedings of the Workshops Proceedings of the 7th IEEE International Conference on Data Mining (ICDM 2007), 2007

Building Domain-Specific Taggers without Annotated (Domain) Data.
Proceedings of the EMNLP-CoNLL 2007, 2007

Adaptation of POS Tagging for Multiple BioMedical Domains.
Proceedings of the Biological, translational, and clinical language processing, 2007

Enhancing Acronym/Abbreviation Knowledge Bases with Semantic Information.
Proceedings of the AMIA 2007, 2007

2006
Research Paper: Quantitative Assessment of Dictionary-based Protein Named Entity Tagging.
J. Am. Medical Informatics Assoc., 2006

An online literature mining tool for protein phosphorylation.
Bioinform., 2006

Headwords and Suffixes in Biomedical Names.
Proceedings of the Knowledge Discovery in Life Science Literature, 2006

Rapid Adaptation of POS Tagging for Domain Specific Uses.
Proceedings of the Workshop on Linking Natural Language and Biology, 2006

2004
Using name-internal and contextual features to classify biological terms.
J. Biomed. Informatics, 2004

2003
An Investigation of Various Information Sources for Classifying Biological names.
Proceedings of the Workshop on Natural Language Processing in Biomedicine, 2003

2002
Stability of steepest descent with momentum for quadratic functions.
IEEE Trans. Neural Networks, 2002


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