Makoto Miwa

Orcid: 0000-0002-2330-6972

According to our database1, Makoto Miwa authored at least 105 papers between 2006 and 2024.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

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Bibliography

2024
Two evaluations on Ontology-style relation annotations.
Comput. Speech Lang., March, 2024

End-to-End Trainable Soft Retriever for Low-resource Relation Extraction.
CoRR, 2024

BERT-NAR-BERT: A Non-Autoregressive Pre-Trained Sequence-to-Sequence Model Leveraging BERT Checkpoints.
IEEE Access, 2024

AIST AIRC Systems for the WMT 2024 Shared Tasks.
Proceedings of the Ninth Conference on Machine Translation, 2024

KAT5: Knowledge-Aware Transfer Learning with a Text-to-Text Transfer Transformer.
Proceedings of the Machine Learning and Knowledge Discovery in Databases. Applied Data Science Track, 2024

Entity-aware Multi-task Training Helps Rare Word Machine Translation.
Proceedings of the 17th International Natural Language Generation Conference, 2024

2023
Contextualized medication event extraction with striding NER and multi-turn QA.
J. Biomed. Informatics, August, 2023

Contextualized medication event extraction with levitated markers.
J. Biomed. Informatics, May, 2023

Integrating heterogeneous knowledge graphs into drug-drug interaction extraction from the literature.
Bioinform., January, 2023

Large-scale neural biomedical entity linking with layer overwriting.
J. Biomed. Informatics, 2023

Span-based Named Entity Recognition by Generating and Compressing Information.
CoRR, 2023

AIST AIRC Submissions to the WMT23 Shared Task.
Proceedings of the Eighth Conference on Machine Translation, 2023

Span-based Named Entity Recognition by Generating and Compressing Information.
Proceedings of the 17th Conference of the European Chapter of the Association for Computational Linguistics, 2023

DISTANT: Distantly Supervised Entity Span Detection and Classification.
Proceedings of the 22nd Workshop on Biomedical Natural Language Processing and BioNLP Shared Tasks, 2023

Biomedical Relation Extraction with Entity Type Markers and Relation-specific Question Answering.
Proceedings of the 22nd Workshop on Biomedical Natural Language Processing and BioNLP Shared Tasks, 2023

Distantly Supervised Document-Level Biomedical Relation Extraction with Neighborhood Knowledge Graphs.
Proceedings of the 22nd Workshop on Biomedical Natural Language Processing and BioNLP Shared Tasks, 2023

Biomedical Document Classification with Literature Graph Representations of Bibliographies and Entities.
Proceedings of the 22nd Workshop on Biomedical Natural Language Processing and BioNLP Shared Tasks, 2023

BioNART: A Biomedical Non-AutoRegressive Transformer for Natural Language Generation.
Proceedings of the 22nd Workshop on Biomedical Natural Language Processing and BioNLP Shared Tasks, 2023

2022
Comparing neural models for nested and overlapping biomedical event detection.
BMC Bioinform., 2022

BioVAE: a pre-trained latent variable language model for biomedical text mining.
Bioinform., 2022

Extracting and Analyzing Inorganic Material Synthesis Procedures in the Literature.
IEEE Access, 2022

Named Entity Recognition for Cancer Immunology Research Using Distant Supervision.
Proceedings of the 21st Workshop on Biomedical Language Processing, 2022

Improving Supervised Drug-Protein Relation Extraction with Distantly Supervised Models.
Proceedings of the 21st Workshop on Biomedical Language Processing, 2022

Learning Disentangled Representations of Negation and Uncertainty.
Proceedings of the 60th Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers), 2022

2021
Representing a Heterogeneous Pharmaceutical Knowledge-Graph with Textual Information.
Frontiers Res. Metrics Anal., 2021

Physical Context and Timing Aware Sequence Generating GANs.
CoRR, 2021

Using drug descriptions and molecular structures for drug-drug interaction extraction from literature.
Bioinform., 2021

Analyzing Research Trends in Inorganic Materials Literature Using NLP.
Proceedings of the Machine Learning and Knowledge Discovery in Databases. Applied Data Science Track, 2021

Distantly Supervised Relation Extraction with Sentence Reconstruction and Knowledge Base Priors.
Proceedings of the 2021 Conference of the North American Chapter of the Association for Computational Linguistics: Human Language Technologies, 2021

A Neural Edge-Editing Approach for Document-Level Relation Graph Extraction.
Proceedings of the Findings of the Association for Computational Linguistics: ACL/IJCNLP 2021, 2021

2020
An ensemble of neural models for nested adverse drug events and medication extraction with subwords.
J. Am. Medical Informatics Assoc., 2020

Adverse drug events and medication relation extraction in electronic health records with ensemble deep learning methods.
J. Am. Medical Informatics Assoc., 2020

Syntactically-informed word representations from graph neural network.
Neurocomputing, 2020

DeepEventMine: end-to-end neural nested event extraction from biomedical texts.
Bioinform., 2020

Annotating and Extracting Synthesis Process of All-Solid-State Batteries from Scientific Literature.
Proceedings of The 12th Language Resources and Evaluation Conference, 2020

Ontology-Style Relation Annotation: A Case Study.
Proceedings of The 12th Language Resources and Evaluation Conference, 2020

BENNERD: A Neural Named Entity Linking System for COVID-19.
Proceedings of the 2020 Conference on Empirical Methods in Natural Language Processing: System Demonstrations, 2020

mgsohrab at WNUT 2020 Shared Task-1: Neural Exhaustive Approach for Entity and Relation Recognition Over Wet Lab Protocols.
Proceedings of the Sixth Workshop on Noisy User-generated Text, 2020

2019
A Generic Neural Exhaustive Approach for Entity Recognition and Sensitive Span Detection.
Proceedings of the Iberian Languages Evaluation Forum co-located with 35th Conference of the Spanish Society for Natural Language Processing, 2019

A Search-based Neural Model for Biomedical Nested and Overlapping Event Detection.
Proceedings of the 2019 Conference on Empirical Methods in Natural Language Processing and the 9th International Joint Conference on Natural Language Processing, 2019

Connecting the Dots: Document-level Neural Relation Extraction with Edge-oriented Graphs.
Proceedings of the 2019 Conference on Empirical Methods in Natural Language Processing and the 9th International Joint Conference on Natural Language Processing, 2019

Coreference Resolution in Full Text Articles with BERT and Syntax-based Mention Filtering.
Proceedings of The 5th Workshop on BioNLP Open Shared Tasks, 2019

A Neural Pipeline Approach for the PharmaCoNER Shared Task using Contextual Exhaustive Models.
Proceedings of The 5th Workshop on BioNLP Open Shared Tasks, 2019

Inter-sentence Relation Extraction with Document-level Graph Convolutional Neural Network.
Proceedings of the 57th Conference of the Association for Computational Linguistics, 2019

2018
A Neural Layered Model for Nested Named Entity Recognition.
Proceedings of the 2018 Conference of the North American Chapter of the Association for Computational Linguistics: Human Language Technologies, 2018

Deep Exhaustive Model for Nested Named Entity Recognition.
Proceedings of the 2018 Conference on Empirical Methods in Natural Language Processing, Brussels, Belgium, October 31, 2018

Investigating Domain-Specific Information for Neural Coreference Resolution on Biomedical Texts.
Proceedings of the BioNLP 2018 workshop, Melbourne, Australia, July 19, 2018, 2018

A Walk-based Model on Entity Graphs for Relation Extraction.
Proceedings of the 56th Annual Meeting of the Association for Computational Linguistics, 2018

Enhancing Drug-Drug Interaction Extraction from Texts by Molecular Structure Information.
Proceedings of the 56th Annual Meeting of the Association for Computational Linguistics, 2018

2017
EDGE2VEC: Edge Representations for Large-Scale Scalable Hierarchical Learning.
Computación y Sistemas, 2017

Bib2vec: An Embedding-based Search System for Bibliographic Information.
CoRR, 2017

TTI-COIN at SemEval-2017 Task 10: Investigating Embeddings for End-to-End Relation Extraction from Scientific Papers.
Proceedings of the 11th International Workshop on Semantic Evaluation, 2017

Analyzing Well-Formedness of Syllables in Japanese Sign Language.
Proceedings of the Eighth International Joint Conference on Natural Language Processing, 2017

Utilizing Visual Forms of Japanese Characters for Neural Review Classification.
Proceedings of the Eighth International Joint Conference on Natural Language Processing, 2017

Bib2vec: Embedding-based Search System for Bibliographic Information.
Proceedings of the 15th Conference of the European Chapter of the Association for Computational Linguistics, 2017

Extracting Drug-Drug Interactions with Attention CNNs.
Proceedings of the BioNLP 2017, Vancouver, Canada, August 4, 2017, 2017

2016
IN-DEDUCTIVE and DAG-Tree Approaches for Large-Scale Extreme Multi-label Hierarchical Text Classification.
Polibits, 2016

Topic detection using paragraph vectors to support active learning in systematic reviews.
J. Biomed. Informatics, 2016

Stacking Approach to Temporal Relation Classification with Temporal Inference.
Inf. Media Technol., 2016

Ensemble Classification of Grants using LDA-based Features.
Proceedings of the Tenth International Conference on Language Resources and Evaluation LREC 2016, 2016

Distributional Hypernym Generation by Jointly Learning Clusters and Projections.
Proceedings of the COLING 2016, 2016

End-to-End Relation Extraction using LSTMs on Sequences and Tree Structures.
Proceedings of the 54th Annual Meeting of the Association for Computational Linguistics, 2016

2015
Adaptable, high recall, event extraction system with minimal configuration.
BMC Bioinform., December, 2015

Identifying synonymy between relational phrases using word embeddings.
J. Biomed. Informatics, 2015

Wide-coverage relation extraction from MEDLINE using deep syntax.
BMC Bioinform., 2015

Centroid-Means-Embedding: An Approach to Infusing Word Embeddings into Features for Text Classification.
Proceedings of the Advances in Knowledge Discovery and Data Mining, 2015

Word Embedding-based Antonym Detection using Thesauri and Distributional Information.
Proceedings of the NAACL HLT 2015, The 2015 Conference of the North American Chapter of the Association for Computational Linguistics: Human Language Technologies, Denver, Colorado, USA, May 31, 2015

Task-Oriented Learning of Word Embeddings for Semantic Relation Classification.
Proceedings of the 19th Conference on Computational Natural Language Learning, 2015

2014
Reducing systematic review workload through certainty-based screening.
J. Biomed. Informatics, 2014

Discovering robust Embeddings in (DIS)Similarity Space for High-Dimensional Linguistic Features.
Comput. Intell., 2014

Exploiting Timegraphs in Temporal Relation Classification.
Proceedings of TextGraphs@EMNLP 2014: the 9th Workshop on Graph-based Methods for Natural Language Processing, 2014

Modeling Joint Entity and Relation Extraction with Table Representation.
Proceedings of the 2014 Conference on Empirical Methods in Natural Language Processing, 2014

Jointly Learning Word Representations and Composition Functions Using Predicate-Argument Structures.
Proceedings of the 2014 Conference on Empirical Methods in Natural Language Processing, 2014

Comparable Study of Event Extraction in Newswire and Biomedical Domains.
Proceedings of the COLING 2014, 2014

2013
Named entity recognition with multiple segment representations.
Inf. Process. Manag., 2013

Design and implementation of GXP make - A workflow system based on make.
Future Gener. Comput. Syst., 2013

Wide coverage biomedical event extraction using multiple partially overlapping corpora.
BMC Bioinform., 2013

A method for integrating and ranking the evidence for biochemical pathways by mining reactions from text.
Bioinform., 2013

UTTime: Temporal Relation Classification using Deep Syntactic Features.
Proceedings of the 7th International Workshop on Semantic Evaluation, 2013

Simple Customization of Recursive Neural Networks for Semantic Relation Classification.
Proceedings of the 2013 Conference on Empirical Methods in Natural Language Processing, 2013

Comparison Training of Shogi Evaluation Functions with Self-Generated Training Positions and Moves.
Proceedings of the Computers and Games - 8th International Conference, 2013

NaCTeM EventMine for BioNLP 2013 CG and PC tasks.
Proceedings of the BioNLP Shared Task 2013 Workshop, Sofia, 2013

Optimizing Objective Function Parameters for Strength in Computer Game-Playing.
Proceedings of the Twenty-Seventh AAAI Conference on Artificial Intelligence, 2013

2012
Improving protein coreference resolution by simple semantic classification.
BMC Bioinform., 2012

Extracting semantically enriched events from biomedical literature.
BMC Bioinform., 2012

Event extraction across multiple levels of biological organization.
Bioinform., 2012

Boosting automatic event extraction from the literature using domain adaptation and coreference resolution.
Bioinform., 2012

2011
U-Compare: A modular NLP workflow construction and evaluation system.
IBM J. Res. Dev., 2011

U-Compare bio-event meta-service: compatible BioNLP event extraction services.
BMC Bioinform., 2011

Event extraction for DNA methylation.
J. Biomed. Semant., 2011

Discovering and visualizing indirect associations between biomedical concepts.
Bioinform., 2011

Towards Exhaustive Event Extraction for Protein Modifications.
Proceedings of the 2011 Workshop on Biomedical Natural Language Processing, 2011

2010
Extracting Protein Interactions from Text with the Unified AkaneRE Event Extraction System.
IEEE ACM Trans. Comput. Biol. Bioinform., 2010

Event Extraction with Complex Event Classification Using Rich Features.
J. Bioinform. Comput. Biol., 2010

Medie and Info-pubmed: 2010 update.
BMC Bioinform., 2010

Entity-Focused Sentence Simplification for Relation Extraction.
Proceedings of the COLING 2010, 2010

Evaluating Dependency Representations for Event Extraction.
Proceedings of the COLING 2010, 2010

Event Extraction for Post-Translational Modifications.
Proceedings of the 2010 Workshop on Biomedical Natural Language Processing, 2010

A Comparative Study of Syntactic Parsers for Event Extraction.
Proceedings of the 2010 Workshop on Biomedical Natural Language Processing, 2010

2009
A cutting-plane method based on redundant rows for improving fractional distance.
IEEE J. Sel. Areas Commun., 2009

Protein-protein interaction extraction by leveraging multiple kernels and parsers.
Int. J. Medical Informatics, 2009

A Rich Feature Vector for Protein-Protein Interaction Extraction from Multiple Corpora.
Proceedings of the 2009 Conference on Empirical Methods in Natural Language Processing, 2009

From Protein-Protein Interaction to Molecular Event Extraction.
Proceedings of the BioNLP 2009 Workshop Companion Volume for Shared Task, BioNLP@HLT-NAACL 2009, 2009

2007
Automatic Generation of Evaluation Features for Computer Game Players.
Proceedings of the 2007 IEEE Symposium on Computational Intelligence and Games, 2007

2006
Automatic Construction of Static Evaluation Functions for Computer Game Players.
Proceedings of the Discovery Science, 9th International Conference, 2006


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