Mahdi Belcaid

According to our database, Mahdi Belcaid authored at least 19 papers between 2007 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

Improvements in viral gene annotation using large language models and soft alignments.

William L. Harrigan, Barbra D. Ferrell, K. Eric Wommack, Shawn W. Polson, Zachary D. Schreiber, Mahdi Belcaid

BMC Bioinform., December, 2024

Space to Teach: Content-Rich Canvases for Visually-Intensive Education.

Jesse Harden, Nurit Kirshenbaum, Roderick S. Tabalba, Ryan Theriot, Michael L. Rogers, Mahdi Belcaid, Chris North, Luc Renambot, Lance Long, Andrew E. Johnson, Jason Leigh

Proceedings of the IEEE VIS Workshop on Visualization Education, Literacy, and Activities, 2024

2023

Reflecting on the Scalable Adaptive Graphics Environment Team's 20-Year Translational Research Endeavor in Digital Collaboration Tools.

Mahdi Belcaid, Jason Leigh, Ryan Theriot, Nurit Kirshenbaum, Roderick S. Tabalba, Michael L. Rogers, Andrew E. Johnson, Maxine D. Brown, Luc Renambot, Lance Long, Arthur Nishimoto, Chris North, Jesse Harden

Comput. Sci. Eng., 2023

2022

Leveraging deep contrastive learning for semantic interaction.

Mahdi Belcaid, Alberto Gonzalez Martinez, Jason Leigh

PeerJ Comput. Sci., 2022

The C-MĀIKI Gateway: A Modern Science Platform for Analyzing Microbiome Data.

Sean B. Cleveland, Cédric Arisdakessian, Craig Nelson, Mahdi Belcaid, Kiana Frank, Gwen A. Jacobs

Proceedings of the PEARC '22: Practice and Experience in Advanced Research Computing, Boston, MA, USA, July 10, 2022

2021

Traces of Time through Space: Advantages of Creating Complex Canvases in Collaborative Meetings.

Nurit Kirshenbaum, Kylie Davidson, Jesse Harden, Chris North, Dylan Kobayashi, Ryan Theriot, Roderick S. Tabalba, Michael L. Rogers, Mahdi Belcaid, Andrew Thomas Burks, Krishna Bharadwaj, Luc Renambot, Andrew E. Johnson, Lance Long, Jason Leigh

Proc. ACM Hum. Comput. Interact., 2021

CoCoNet: an efficient deep learning tool for viral metagenome binning.

Cédric Arisdakessian, Olivia D. Nigro, Grieg F. Steward, Guylaine Poisson, Mahdi Belcaid

Bioinform., 2021

Efficient DNA sequence partitioning using probabilistic subsets and hypergraphs.

Mahdi Belcaid, Cédric Arisdakessian, Yuliia Kravchenko

Proceedings of the SAC '21: The 36th ACM/SIGAPP Symposium on Applied Computing, 2021

Securing Collaborative Work in Wide-band Display Environments.

Krishna Bharadwaj, Andrew Burks, Andrew E. Johnson, Lance Long, Luc Renambot, Maxine D. Brown, Dylan Kobayashi, Mahdi Belcaid, Nurit Kirshenbaum, Roderick S. Tabalba, Ryan Theriot, Jason Leigh

Proceedings of the 7th IEEE International Conference on Collaboration and Internet Computing, 2021

2020

MetaFlow|mics: Scalable and Reproducible Nextflow Pipelines for the Analysis of Microbiome Marker Data.

Cédric Arisdakessian, Sean B. Cleveland, Mahdi Belcaid

Proceedings of the PEARC '20: Practice and Experience in Advanced Research Computing, 2020

2019

Usage Patterns of Wideband Display Environments In e-Science Research, Development and Training.

Jason Leigh, Krishna Bharadwaj, Arthur Nishimoto, Lance Long, Jason Haga, John Burns, Francis Cristobal, Jared H. McLean, Roberto Pelayo, Mahdi Belcaid, Dylan Kobayashi, Nurit Kirshenbaum, Troy Wooton, Alberto Gonzalez, Luc Renambot, Andrew E. Johnson, Maxine D. Brown, Andrew Burks

Proceedings of the 15th International Conference on eScience, 2019

2017

A profile-based probabilistic approach for the detection of anomalies in the cytochrome C oxidase I amplicon sequences.

Mahdi Belcaid, Guylaine Poisson

Proceedings of the Symposium on Applied Computing, 2017

2015

Reconstructing the history of a WD40 beta-propeller tandem repeat using a phylogenetically informed algorithm.

Philippe Lavoie-Mongrain, Mahdi Belcaid, Aïda Ouangraoua, Anne Bergeron, Guylaine Poisson

PeerJ Comput. Sci., 2015

2011

The evolution of the tape measure protein: units, duplications and losses.

Mahdi Belcaid, Anne Bergeron, Guylaine Poisson

BMC Bioinform., 2011

Efficient clustering of populations using a minimal SNP panel.

Mahdi Belcaid, Kyungim Baek, David Haymer, Guylaine Poisson

Proceedings of the 2011 ACM Symposium on Applied Computing (SAC), TaiChung, Taiwan, March 21, 2011

2010

Mosaic Graphs and Comparative Genomics in Phage Communities.

Mahdi Belcaid, Anne Bergeron, Guylaine Poisson

J. Comput. Biol., 2010

Virus DNA-fragment classification using taxonomic hidden Markov model profiles.

Mark Menor, Kyungim Baek, Mahdi Belcaid, Yannick Gingras, Guylaine Poisson

Proceedings of the 2010 ACM Symposium on Applied Computing (SAC), 2010

2009

Comparative Genomics and Extensive Recombinations in Phage Communities.

Guylaine Poisson, Mahdi Belcaid, Anne Bergeron

Proceedings of the Comparative Genomics, International Workshop, 2009

2007

Exploring Genome Rearrangements using Virtual Hybridization.

Mahdi Belcaid, Anne Bergeron, Annie Chateau, Cédric Chauve, Yannick Gingras, Guylaine Poisson, M. Vendette

Proceedings of 5th Asia-Pacific Bioinformatics Conference, 2007