Madalena Chaves

IEEE Trans. Autom. Control., February, 2023

2021

Special issue "International Symposium on Molecular Logic and Computational Synthetic Biology: MLCSB18".

[BibT_eX]

[DOI]

Tomas Veloz

Manuel António Martins

Soft Comput., 2021

2020

Boolean dynamics revisited through feedback interconnections.

[BibT_eX]

[DOI]

Daniel Figueiredo

Manuel A. Martins

Nat. Comput., 2020

Cell cycle period control through modulation of clock inputs.

[BibT_eX]

[DOI]

Sofia Almeida

Franck Delaunay

J. Bioinform. Comput. Biol., 2020

A model of apoptosis receptor reactions to study cell fate decision.

[BibT_eX]

[DOI]

Luis C. Gomes-Pereira

Jérémie Roux

Proceedings of the 28th Mediterranean Conference on Control and Automation, 2020

Core Models of Receptor Reactions to Evaluate Basic Pathway Designs Enabling Heterogeneous Commitments to Apoptosis.

[BibT_eX]

[DOI]

Marielle Péré

Jérémie Roux

Proceedings of the Computational Methods in Systems Biology, 2020

Qualitative Analysis of Mammalian Circadian Oscillations: Cycle Dynamics and Robustness.

[BibT_eX]

[DOI]

Ousmane Diop

Proceedings of the Computational Methods in Systems Biology, 2020

2019

Dynamics of complex feedback architectures in metabolic pathways.

[BibT_eX]

[DOI]

Diego A. Oyarzún

Autom., 2019

rPrism - A Software for Reactive Weighted State Transition Models.

[BibT_eX]

[DOI]

Daniel Figueiredo

Eugénio Rocha

Manuel António Martins

Proceedings of the Hybrid Systems Biology - 6th International Workshop, 2019

Coupling and synchronization of piecewise linear genetic regulatory systems.

[BibT_eX]

[DOI]

Luca Scardovi

Eleni Firippi

Proceedings of the 58th IEEE Conference on Decision and Control, 2019

2018

A Stability Result for Periodic Solutions of Nonmonotonic Smooth Negative Feedback Systems.

[BibT_eX]

[DOI]

Camille Poignard

SIAM J. Appl. Dyn. Syst., 2018

2016

Periodic Oscillations for Nonmonotonic Smooth Negative Feedback Circuits.

[BibT_eX]

[DOI]

Camille Poignard

SIAM J. Appl. Dyn. Syst., 2016

2015

Attractor computation using interconnected Boolean networks: Testing growth rate models in E. Coli.

[BibT_eX]

[DOI]

Theor. Comput. Sci., 2015

Continuous-switch piecewise quadratic models of biological networks: Application to bacterial growth.

[BibT_eX]

[DOI]

Autom., 2015

2013

Interconnection of asynchronous Boolean networks, asymptotic and transient dynamics.

[BibT_eX]

[DOI]

Autom., 2013

A Class of Switched Piecewise Quadratic Systems for Coupling Gene Expression with Growth Rate in Bacteria.

[BibT_eX]

[DOI]

Proceedings of the 9th IFAC Symposium on Nonlinear Control Systems, 2013

A linear reformulation of Boolean optimization problems and structure identification of gene regulation networks.

[BibT_eX]

[DOI]

Christian Breindl

Frank Allgöwer

Proceedings of the 52nd IEEE Conference on Decision and Control, 2013

Predictive analysis of dynamical systems: combining discrete and continuous formalisms.

[BibT_eX]

[DOI]

, 2013

2012

A Simple Model to Control Growth Rate of Synthetic E. coli during the Exponential Phase: Model Analysis and Parameter Estimation.

[BibT_eX]

[DOI]

Proceedings of the Computational Methods in Systems Biology, 2012

2011

Exact control of genetic networks in a qualitative framework: The bistable switch example.

[BibT_eX]

[DOI]

Autom., 2011

An observer for a piecewise affine genetic network model with Boolean observations.

[BibT_eX]

[DOI]

Xiao-Dong Li

Proceedings of the 50th IEEE Conference on Decision and Control and European Control Conference, 2011

Predicting the asymptotic dynamics of large biological networks by interconnections of Boolean modules.

[BibT_eX]

[DOI]

Proceedings of the 50th IEEE Conference on Decision and Control and European Control Conference, 2011

2009

Shape, Size, and Robustness: Feasible Regions in the Parameter Space of Biochemical Networks.

[BibT_eX]

[DOI]

PLoS Comput. Biol., 2009

Live and let die - A systems biology view on cell death.

[BibT_eX]

[DOI]

Thomas Eissing

Frank Allgöwer

Comput. Chem. Eng., 2009

Operational interactions in genetic networks: Application to an apoptosis signalling pathway.

[BibT_eX]

[DOI]

Proceedings of the 10th European Control Conference, 2009

Methods for qualitative analysis of genetic networks.

[BibT_eX]

[DOI]

Proceedings of the 10th European Control Conference, 2009

2008

Bistable Biological Systems: A Characterization Through Local Compact Input-to-State Stability.

[BibT_eX]

[DOI]

Thomas Eissing

Frank Allgöwer

IEEE Trans. Autom. Control., 2008

2006

Exact computation of amplification for a class of nonlinear systems arising from cellular signaling pathways.

[BibT_eX]

[DOI]

Autom., 2006

Structure and timescale analysis in genetic regulatory networks.

[BibT_eX]

[DOI]

Réka Albert

Proceedings of the 45th IEEE Conference on Decision and Control, 2006

Stability of Rate-Controlled Zero-Deficiency Networks.

[BibT_eX]

[DOI]

Proceedings of the 45th IEEE Conference on Decision and Control, 2006

2005

Input-to-State Stability of Rate-Controlled Biochemical Networks.

[BibT_eX]

[DOI]

SIAM J. Control. Optim., 2005

2004

Gains and optimal design in signaling pathways.

[BibT_eX]

[DOI]

Robert J. Dinerstein

Proceedings of the 43rd IEEE Conference on Decision and Control, 2004

2003

Vehicle networks: achieving regular formation.

[BibT_eX]

[DOI]

Proceedings of the American Control Conference, 2003

2002

State-estimators for Chemical Reaction Networks of Feinberg-Horn-Jackson Zero Deficiency Type.

[BibT_eX]

[DOI]

Eur. J. Control, 2002

2001

Observers for chemical reaction networks.

[BibT_eX]

[DOI]