Maciej Antczak

According to our database, Maciej Antczak authored at least 22 papers between 2014 and 2024.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2024

Knotted artifacts in predicted 3D RNA structures.

Bartosz Ambrozy Gren, Maciej Antczak, Tomasz Zok, Joanna I. Sulkowska, Marta Szachniuk

PLoS Comput. Biol., 2024

2023

High-quality, customizable heuristics for RNA 3D structure alignment.

Michal Zurkowski, Maciej Antczak, Marta Szachniuk

Bioinform., May, 2023

Machine learning for RNA 2D structure prediction benchmarked on experimental data.

Marek Justyna, Maciej Antczak, Marta Szachniuk

Briefings Bioinform., May, 2023

2022

RNAspider: a webserver to analyze entanglements in RNA 3D structures.

Kamil Luwanski, Vladyslav Hlushchenko, Mariusz Popenda, Tomasz Zok, Joanna Sarzynska, Daniil Martsich, Marta Szachniuk, Maciej Antczak

Nucleic Acids Res., 2022

RNAloops: a database of RNA multiloops.

Jakub Wiedemann, Jacek Kaczor, Maciej Milostan, Tomasz Zok, Jacek Blazewicz, Marta Szachniuk, Maciej Antczak

Bioinform., 2022

RNAsolo: a repository of cleaned PDB-derived RNA 3D structures.

Bartosz Adamczyk, Maciej Antczak, Marta Szachniuk

Bioinform., 2022

2021

Brilliant Challenges Optimization Problem Submission Contest Final Report.

Jan Badura, Artur Laskowski, Maciej Antczak, Jacek Blazewicz, Grzegorz Pawlak, Erwin Pesch, Thomas Villmann, Szymon Wasik

CoRR, 2021

2020

New models and algorithms for RNA pseudoknot order assignment.

Tomasz Zok, Jan Badura, Sylwester Swat, Kacper Figurski, Mariusz Popenda, Maciej Antczak

Int. J. Appl. Math. Comput. Sci., 2020

2019

RNAvista: a webserver to assess RNA secondary structures with non-canonical base pairs.

Maciej Antczak, Marcin Zablocki, Tomasz Zok, Agnieszka Rybarczyk, Jacek Blazewicz, Marta Szachniuk

Bioinform., 2019

2018

RNApdbee 2.0: multifunctional tool for RNA structure annotation.

Tomasz Zok, Maciej Antczak, Michal Zurkowski, Mariusz Popenda, Jacek Blazewicz, Ryszard W. Adamiak, Marta Szachniuk

Nucleic Acids Res., 2018

A Survey on Online Judge Systems and Their Applications.

Szymon Wasik, Maciej Antczak, Jan Badura, Artur Laskowski, Tomasz Sternal

ACM Comput. Surv., 2018

Evaluation as a Service architecture and crowdsourced problems solving implemented in Optil.io platform.

Szymon Wasik, Maciej Antczak, Jan Badura, Artur Laskowski

CoRR, 2018

RNAfitme: a webserver for modeling nucleobase and nucleoside residue conformation in fixed-backbone RNA structures.

Maciej Antczak, Tomasz Zok, Maciej Osowiecki, Mariusz Popenda, Ryszard W. Adamiak, Marta Szachniuk

BMC Bioinform., 2018

New algorithms to represent complex pseudoknotted RNA structures in dot-bracket notation.

Maciej Antczak, Mariusz Popenda, Tomasz Zok, Michal Zurkowski, Ryszard W. Adamiak, Marta Szachniuk

Bioinform., 2018

2016

High-order statistical compressor for long-term storage of DNA sequencing data.

Marek Chlopkowski, Maciej Antczak, Michal Slusarczyk, Aleksander Wdowinski, Michal Zajaczkowski, Marta Kasprzak

RAIRO Oper. Res., 2016

Structural alignment of protein descriptors - a combinatorial model.

Maciej Antczak, Marta Kasprzak, Piotr Lukasiak, Jacek Blazewicz

BMC Bioinform., 2016

Optil.io: Cloud Based Platform For Solving Optimization Problems Using Crowdsourcing Approach.

Szymon Wasik, Maciej Antczak, Jan Badura, Artur Laskowski, Tomasz Sternal

Proceedings of the 19th ACM Conference on Computer Supported Cooperative Work and Social Computing, 2016

2015

RNAssess - a web server for quality assessment of RNA 3D structures.

Piotr Lukasiak, Maciej Antczak, Tomasz Ratajczak, Marta Szachniuk, Mariusz Popenda, Ryszard W. Adamiak, Jacek Blazewicz

Nucleic Acids Res., 2015

New in silico approach to assessing RNA secondary structures with non-canonical base pairs.

Agnieszka Rybarczyk, Natalia Szostak, Maciej Antczak, Tomasz Zok, Mariusz Popenda, Ryszard W. Adamiak, Jacek Blazewicz, Marta Szachniuk

BMC Bioinform., 2015

Building the Library of Rna 3D Nucleotide Conformations Using the Clustering Approach.

Tomasz Zok, Maciej Antczak, Martin Riedel, David Nebel, Thomas Villmann, Piotr Lukasiak, Jacek Blazewicz, Marta Szachniuk

Int. J. Appl. Math. Comput. Sci., 2015

SphereGrinder - reference structure-based tool for quality assessment of protein structural models.

Piotr Lukasiak, Maciej Antczak, Tomasz Ratajczak, Jacek Blazewicz

Proceedings of the 2015 IEEE International Conference on Bioinformatics and Biomedicine, 2015

2014

RNApdbee - a webserver to derive secondary structures from pdb files of knotted and unknotted RNAs.

Maciej Antczak, Tomasz Zok, Mariusz Popenda, Piotr Lukasiak, Ryszard W. Adamiak, Jacek Blazewicz, Marta Szachniuk

Nucleic Acids Res., 2014