M. Oguzhan Külekci

According to our database, M. Oguzhan Külekci authored at least 59 papers between 2001 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2024

An extended de Bruijn graph for feature engineering over biological sequential data.

Mert Onur Cakiroglu, Hasan Kurban, Parichit Sharma, M. Oguzhan Külekci, Elham Khorasani Buxton, Maryam Raeeszadeh-Sarmazdeh, Mehmet M. Dalkilic

Mach. Learn. Sci. Technol., 2024

2023

Randomized Data Partitioning with Efficient Search, Retrieval and Privacy-Preservation.

M. Oguzhan Külekci

Proceedings of the Computing and Combinatorics - 29th International Conference, 2023

2022

Tile Selection-based H.265/HEVC Coding.

Hakki Burak Çardak, Levent Çarkacioglu, Muhammed Oguzhan Külekci

Proceedings of the 16th International Conference on Signal-Image Technology & Internet-Based Systems, 2022

Counting with Prediction: Rank and Select Queries with Adjusted Anchoring.

M. Oguzhan Külekci

Proceedings of the Data Compression Conference, 2022

Memory-Efficient FM-Index Construction for Reference Genomes.

Arghya Kusum Das, M. Oguzhan Külekci, Sharma V. Thankachan

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022

2021

I/O-efficient data structures for non-overlapping indexing.

Sahar Hooshmand, Paniz Abedin, M. Oguzhan Külekci, Sharma V. Thankachan

Theor. Comput. Sci., 2021

An Algorithm for Reordering Buffer Management Problem and Experimental Evaluations on Discrete Distributions.

Gözde Filiz, M. Oguzhan Külekci

CoRR, 2021

2020

The order-preserving pattern matching problem in practice.

Domenico Cantone, Simone Faro, M. Oguzhan Külekci

Discret. Appl. Math., 2020

A Survey on Shortest Unique Substring Queries.

Paniz Abedin, M. Oguzhan Külekci, Sharma V. Thankachan

Algorithms, 2020

Enumerative Data Compression with Non-Uniquely Decodable Codes.

M. Oguzhan Külekci, Yasin Öztürk, Elif Altunok, Can Yilmaz Altinigne

Proceedings of the Prague Stringology Conference 2020, Prague, Czech Republic, August 31, 2020

Shape-Preserving Pattern Matching.

Domenico Cantone, Simone Faro, M. Oguzhan Külekci

Proceedings of the 21st Italian Conference on Theoretical Computer Science, 2020

FM-Index Reveals the Reverse Suffix Array.

Arnab Ganguly, Daniel Gibney, Sahar Hooshmand, M. Oguzhan Külekci, Sharma V. Thankachan

Proceedings of the 31st Annual Symposium on Combinatorial Pattern Matching, 2020

2019

Applications of Non-Uniquely Decodable Codes to Privacy-Preserving High-Entropy Data Representation.

Muhammed Oguzhan Külekci, Yasin Öztürk

Algorithms, 2019

Privacy-Preserving Text Similarity via Non-Prefix-Free Codes.

M. Oguzhan Külekci, Ismail Habib, Amir Aghabaiglou

Proceedings of the Similarity Search and Applications - 12th International Conference, 2019

Sketching Algorithms for Genomic Data Analysis and Querying in a Secure Enclave.

Can Kockan, Kaiyuan Zhu, Natnatee Dokmai, Nikolai Karpov, M. Oguzhan Külekci, David P. Woodruff, Süleyman Cenk Sahinalp

Proceedings of the Research in Computational Molecular Biology, 2019

2018

A Two-Level Scheme for Quality Score Compression.

Jan Voges, Ali Fotouhi, Jörn Ostermann, Muhammed Oguzhan Külekci

J. Comput. Biol., 2018

An Ambiguous Coding Scheme for Selective Encryption of High Entropy Volumes.

M. Oguzhan Külekci

Proceedings of the 17th International Symposium on Experimental Algorithms, 2018

Optimizing Packed String Matching on AVX2 Platform.

Mehmet Akif Aydogmus, M. Oguzhan Külekci

Proceedings of the High Performance Computing for Computational Science - VECPAR 2018, 2018

Quality Assessment of High-Throughput DNA Sequencing Data via Range Analysis.

Ali Fotouhi, Mina Majidi, M. Oguzhan Külekci

Proceedings of the Bioinformatics and Biomedical Engineering, 2018

Non-Overlapping Indexing - Cache Obliviously.

Sahar Hooshmand, Paniz Abedin, M. Oguzhan Külekci, Sharma V. Thankachan

Proceedings of the Annual Symposium on Combinatorial Pattern Matching, 2018

2017

Engineering order-preserving pattern matching with SIMD parallelism.

Tamanna Chhabra, Simone Faro, M. Oguzhan Külekci, Jorma Tarhio

Softw. Pract. Exp., 2017

Range selection and predecessor queries in data aware space and time.

M. Oguzhan Külekci, Sharma V. Thankachan

J. Discrete Algorithms, 2017

A System Architecture for Efficient Transmission of Massive DNA Sequencing Data.

Mahmut Samil Sagiroglu, M. Oguzhan Külekci

J. Comput. Biol., 2017

Security analysis on the ADS-B technology.

Eren Kocaaga, M. Oguzhan Külekci

Proceedings of the 25th Signal Processing and Communications Applications Conference, 2017

2016

Inverse Range Selection Queries.

M. Oguzhan Külekci

Proceedings of the String Processing and Information Retrieval, 2016

GENCROBAT: Efficient transmission and processing of the massive genomic data.

M. Oguzhan Külekci, Mahmut Samil Sagiroglu

Proceedings of the 2016 IEEE/IFIP Network Operations and Management Symposium, 2016

Efficient Algorithms for the Order Preserving Pattern Matching Problem.

Simone Faro, M. Oguzhan Külekci

Proceedings of the Algorithmic Aspects in Information and Management, 2016

2015

A simple yet time-optimal and linear-space algorithm for shortest unique substring queries.

Atalay Mert Ileri, M. Oguzhan Külekci, Bojian Xu

Theor. Comput. Sci., 2015

On Longest Repeat Queries.

Atalay Mert Ileri, M. Oguzhan Külekci, Bojian Xu

CoRR, 2015

Huffman Codes versus Augmented Non-Prefix-Free Codes.

Boran Adas, Ersin Bayraktar, M. Oguzhan Külekci

Proceedings of the Experimental Algorithms - 14th International Symposium, 2015

Alternative Algorithms for Order-Preserving Matching.

Tamanna Chhabra, M. Oguzhan Külekci, Jorma Tarhio

Proceedings of the Prague Stringology Conference 2015, 2015

An Efficient Skip-Search Approach to the Order-Preserving Pattern Matching Problem.

Domenico Cantone, Simone Faro, M. Oguzhan Külekci

Proceedings of the Prague Stringology Conference 2015, 2015

Nucleotide Sequence Alignment and Compression via Shortest Unique Substring.

Boran Adas, Ersin Bayraktar, Simone Faro, Ibraheem Elsayed Moustafa, M. Oguzhan Külekci

Proceedings of the Bioinformatics and Biomedical Engineering, 2015

Range Selection Queries in Data Aware Space and Time.

M. Oguzhan Külekci, Sharma V. Thankachan

Proceedings of the 2015 Data Compression Conference, 2015

2014

Fast and flexible packed string matching.

Simone Faro, M. Oguzhan Külekci

J. Discrete Algorithms, 2014

Enhanced Variable-Length Codes: Improved Compression with Efficient Random Access.

M. Oguzhan Külekci

Proceedings of the Data Compression Conference, 2014

Shortest Unique Substring Query Revisited.

Atalay Mert Ileri, M. Oguzhan Külekci, Bojian Xu

Proceedings of the Combinatorial Pattern Matching - 25th Annual Symposium, 2014

2013

Towards a Very Fast Multiple String Matching Algorithm for Short Patterns.

Simone Faro, M. Oguzhan Külekci

Proceedings of the Prague Stringology Conference 2013, Prague, Czech Republic, 2013

Uniquely decodable and directly accessible non-prefix-free codes via wavelet trees.

M. Oguzhan Külekci

Proceedings of the 2013 IEEE International Symposium on Information Theory, 2013

Fast Packed String Matching for Short Patterns.

Simone Faro, M. Oguzhan Külekci

Proceedings of the 15th Meeting on Algorithm Engineering and Experiments, 2013

2012

Efficient Maximal Repeat Finding Using the Burrows-Wheeler Transform and Wavelet Tree.

M. Oguzhan Külekci, Jeffrey Scott Vitter, Bojian Xu

IEEE ACM Trans. Comput. Biol. Bioinform., 2012

Enumeration of sequences with large alphabets

M. Oguzhan Külekci

CoRR, 2012

A memory versus compression ratio trade-off in PPM via compressed context modeling

M. Oguzhan Külekci

CoRR, 2012

On scrambling the Burrows-Wheeler transform to provide privacy in lossless compression.

M. Oguzhan Külekci

Comput. Secur., 2012

Fast Pattern-Matching via <i>k</i>-bit Filtering Based Text Decomposition.

M. Oguzhan Külekci, Jeffrey Scott Vitter, Bojian Xu

Comput. J., 2012

Fast Multiple String Matching Using Streaming SIMD Extensions Technology.

Simone Faro, M. Oguzhan Külekci

Proceedings of the String Processing and Information Retrieval, 2012

On enumerating the DNA sequences.

M. Oguzhan Külekci

Proceedings of the ACM International Conference on Bioinformatics, 2012

2011

Compressed Context Modeling for Text Compression.

M. Oguzhan Külekci

Proceedings of the 2011 Data Compression Conference (DCC 2011), 2011

A Method to Ensure the Confidentiality of the Compressed Data.

M. Oguzhan Külekci

Proceedings of the First International Conference on Data Compression, 2011

2010

BLIM: A New Bit-Parallel Pattern Matching Algorithm Overcoming Computer Word Size Limitation.

M. Oguzhan Külekci

Math. Comput. Sci., 2010

Boosting Pattern Matching Performance via <i>k</i>-bit Filtering.

M. Oguzhan Külekci, Jeffrey Scott Vitter, Bojian Xu

Proceedings of the Computer and Information Sciences, 2010

PSI-RA: A parallel sparse index for read alignment on genomes.

M. Oguzhan Külekci, Wing-Kai Hon, Rahul Shah, Jeffrey Scott Vitter, Bojian Xu

Proceedings of the 2010 IEEE International Conference on Bioinformatics and Biomedicine, 2010

Time- and space-efficient maximal repeat finding using the burrows-wheeler transform and wavelet trees.

M. Oguzhan Külekci, Jeffrey Scott Vitter, Bojian Xu

Proceedings of the 2010 IEEE International Conference on Bioinformatics and Biomedicine, 2010

2009

Filter Based Fast Matching of Long Patterns by Using SIMD Instructions.

M. Oguzhan Külekci

Proceedings of the Prague Stringology Conference 2009, Prague, Czech Republic, August 31, 2009

2008

A Method to Overcome Computer Word Size Limitation in Bit-Parallel Pattern Matching.

M. Oguzhan Külekci

Proceedings of the Algorithms and Computation, 19th International Symposium, 2008

2007

An Empirical Analysis of Pattern Scan Order in Pattern Matching.

M. Oguzhan Külekci

Proceedings of the World Congress on Engineering, 2007

2006

Statistical morphological disambiguation with application to disambiguation of pronunciations in Turkish (Biçimbirimsel belirsizliğin istatistiksel giderimi ve Türkçe okunuş belirsizliklerinin çözümünde uygulanması)

Muhammed Oguzhan Külekci

PhD thesis, 2006

2005

Pronunciation Disambiguation in Turkish.

M. Oguzhan Külekci, Kemal Oflazer

Proceedings of the Computer and Information Sciences, 2005

2001

Turkish word segmentation using morphological analyzer.

M. Oguzhan Külekci, Mehmed Özkan

Proceedings of the EUROSPEECH 2001 Scandinavia, 2001