Lynn M. Schriml

According to our database, Lynn M. Schriml authored at least 29 papers between 2001 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of two.

2024

Perceptual and technical barriers in sharing and formatting metadata accompanying omics studies.

Yu-Ning Huang, Michael I. Love, Cynthia Flaire Ronkowski, Dhrithi Deshpande, Lynn M. Schriml, Annie Wong-Beringer, Barend Mons, Russell Corbett-Detig, Christopher I Hunter, Jason H. Moore, Lana X. Garmire, T. B. K. Reddy, Winston A. Hide, Atul J. Butte, Mark D. Robinson, Serghei Mangul

CoRR, 2024

2023

CIViCdb 2022: evolution of an open-access cancer variant interpretation knowledgebase.

Kilannin Krysiak, Arpad M. Danos, Jason Saliba, Joshua F. McMichael, Adam C. Coffman, Susanna Kiwala, Erica K. Barnell, Lana Sheta, Cameron J. Grisdale, Lynzey Kujan, Shahil Pema, Jake Lever, Sarah Ridd, Nicholas C. Spies, Veronica Andric, Andreea Chiorean, Damian Tobias Rieke, Kaitlin A. Clark, Caralyn Reisle, Ajay C. Venigalla, Mark Evans, Payal Jani, Hideaki Takahashi, Avila Suda, Peter Horák, Deborah i Ritter, Xin Zhou, Benjamin J. Ainscough, Sean Delong, Chimene Kesserwan, Mario Lamping, Haolin Shen, Alex Marr, My Hoang, Kartik Singhal, Mariam Khanfar, Brian V. Li, Wan-Hsin Lin, Panieh Terraf, Laura B. Corson, Yasser Salama, Katie M. Campbell, Kirsten M. Farncombe, Jianling Ji, Xiaonan Zhao, Xinjie Xu, Rashmi Kanagal-Shamanna, Ian King, Kelsy C. Cotto, Zachary L. Skidmore, Jason R. Walker, Jinghui Zhang, Aleksandar Milosavljevic, Ronak Y. Patel, Rachel H. Giles, Raymond H. Kim, Lynn M. Schriml, Elaine R. Mardis, Steven J. M. Jones, Gordana Raca, Shruti Rao, Subha Madhavan, Alex H. Wagner, Malachi Griffith, Obi L. Griffith

Nucleic Acids Res., January, 2023

Assessing resource use: a case study with the Human Disease Ontology.

J. Allen Baron, Lynn M. Schriml

Database J. Biol. Databases Curation, 2023

2022

The Human Disease Ontology 2022 update.

Lynn M. Schriml, James B. Munro, Mike Schor, Dustin Olley, Carrie McCracken, Victor Felix, J. Allen Baron, Rebecca C. Jackson, Susan M. Bello, Cynthia Bearer, Richard Lichenstein, Katharine Bisordi, Nicole Campion, Michelle G. Giglio, Carol Greene

Nucleic Acids Res., 2022

A comprehensive update on CIDO: the community-based coronavirus infectious disease ontology.

Yongqun He, Hong Yu, Anthony Huffman, Asiyah Yu Lin, Darren A. Natale, John Beverley, Ling Zheng, Yehoshua Perl, Zhigang Wang, Yingtong Liu, Edison Ong, Yang Wang, Philip Huang, Long Tran, Jinyang Du, Zalan Shah, Easheta Shah, Roshan Desai, Hsin-Hui Huang, Yujia Tian, Eric Merrell, William D. Duncan, Sivaram Arabandi, Lynn M. Schriml, Jie Zheng, Anna Maria Masci, Liwei Wang, Hongfang Liu, Fatima Zohra Smaili, Robert Hoehndorf, Zoë May Pendlington, Paola Roncaglia, Xianwei Ye, Jiangan Xie, Yi-Wei Tang, Xiaolin Yang, Suyuan Peng, Luxia Zhang, Luonan Chen, Junguk Hur, Gilbert S. Omenn, Brian D. Athey, Barry Smith

J. Biomed. Semant., 2022

2021

OBO Foundry in 2021: operationalizing open data principles to evaluate ontologies.

Rebecca C. Jackson, Nicolas Matentzoglu, James A. Overton, Randi Vita, James P. Balhoff, Pier Luigi Buttigieg, Seth Carbon, Mélanie Courtot, Alexander D. Diehl, Damion M. Dooley, William D. Duncan, Nomi L. Harris, Melissa A. Haendel, Suzanna E. Lewis, Darren A. Natale, David Osumi-Sutherland, Alan Ruttenberg, Lynn M. Schriml, Barry Smith, Christian J. Stoeckert Jr., Nicole A. Vasilevsky, Ramona L. Walls, Jie Zheng, Christopher J. Mungall, Bjoern Peters

Database J. Biol. Databases Curation, 2021

COVID-19 biomarkers and their overlap with comorbidities in a disease biomarker data model.

Nikhita Gogate, Daniel Lyman, Amanda Bell, Edmund Cauley, Keith A. Crandall, Ashia Joseph, Robel Y. Kahsay, Darren A. Natale, Lynn M. Schriml, Sabyasach Sen, Raja Mazumder

Briefings Bioinform., 2021

Analysis of Biomarker Data Towards Development of a Molecular Biomarker Ontology.

Daniel Lyman, Darren A. Natale, Lynn M. Schriml, Kriston Anton, Daniel C. Crichton, Raja Mazumder

Proceedings of the International Conference on Biomedical Ontologies 2021 co-located with the Workshop on Ontologies for the Behavioural and Social Sciences (OntoBess 2021) as part of the Bolzano Summer of Knowledge (BOSK 2021), 2021

Etiology context of rare diseases in the Human Disease Ontology.

Lynn M. Schriml, J. Allen Baron

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021

2019

Human Disease Ontology 2018 update: classification, content and workflow expansion.

Lynn M. Schriml, Elvira Mitraka, James B. Munro, Becky Tauber, Mike Schor, Lance Nickle, Victor Felix, Linda Jeng, Cynthia Bearer, Richard Lichenstein, Katharine Bisordi, Nicole Campion, Brooke Hyman, David Kurland, Connor Patrick Oates, Siobhan Kibbey, Poorna Sreekumar, Chris Le, Michelle G. Giglio, Carol Greene

Nucleic Acids Res., 2019

ECO, the Evidence & Conclusion Ontology: community standard for evidence information.

Michelle G. Giglio, Rebecca Tauber, Suvarna Nadendla, James B. Munro, Dustin Olley, Shoshannah Ball, Elvira Mitraka, Lynn M. Schriml, Pascale Gaudet, Elizabeth T. Hobbs, Ivan Erill, Deborah A. Siegele, James C. Hu, Chris Mungall, Marcus C. Chibucos

Nucleic Acids Res., 2019

Integrating and Maintaining OMIM Cross-references in the Disease Ontology.

Susan M. Bello, Cynthia L. Smith, Lynn M. Schriml

Proceedings of the 10th International Conference on Biomedical Ontology (ICBO 2019), Buffalo, New York, USA, July 30, 2019

2018

Wikidata as an intuitive resource towards semantic data modeling in data FAIRification.

Annika Jacobsen, Andra Waagmeester, Rajaram Kaliyaperumal, Gregory S. Stupp, Lynn M. Schriml, Mark Thompson, Andrew I. Su, Marco Roos

Proceedings of the 11th International Conference Semantic Web Applications and Tools for Life Sciences, 2018

2016

Wikidata as a semantic framework for the Gene Wiki initiative.

Sebastian Burgstaller-Muehlbacher, Andra Waagmeester, Elvira Mitraka, Julia Turner, Tim E. Putman, Justin Leong, Chinmay Naik, Paul Pavlidis, Lynn M. Schriml, Benjamin M. Good, Andrew I. Su

Database J. Biol. Databases Curation, 2016

Linking Wikidata to the Rest of the Semantic Web.

Andra Waagmeester, Egon L. Willighagen, Núria Queralt Rosinach, Elvira Mitraka, Sebastian Burgstaller-Muehlbacher, Tim E. Putman, Julia Turner, Lynn M. Schriml, Paul Pavlidis, Andrew I. Su, Benjamin M. Good

Proceedings of the 9th International Conference Semantic Web Applications and Tools for Life Sciences, 2016

2015

Disease Ontology 2015 update: an expanded and updated database of human diseases for linking biomedical knowledge through disease data.

Warren A. Kibbe, Cesar Arze, Victor Felix, Elvira Mitraka, Evan Bolton, Gang Fu, Christopher J. Mungall, Janos X. Binder, James Malone, Drashtti Vasant, Helen E. Parkinson, Lynn M. Schriml

Nucleic Acids Res., 2015

Generating a focused view of disease ontology cancer terms for pan-cancer data integration and analysis.

Tsung-Jung Wu, Lynn M. Schriml, Qingrong Chen, Maureen Colbert, Daniel J. Crichton, Richard P. Finney, Ying Hu, Warren A. Kibbe, Heather Kincaid, Daoud M. Meerzaman, Elvira Mitraka, Yang Pan, Krista Smith, Sudhir Srivastava, Sari Ward, Cheng Yan, Raja Mazumder

Database J. Biol. Databases Curation, 2015

Wikidata: A Platform for Data Integration and Dissemination for the Life Sciences and Beyond.

Elvira Mitraka, Andra Waagmeester, Sebastian Burgstaller-Muehlbacher, Lynn M. Schriml, Andrew I. Su, Benjamin M. Good

Proceedings of the 8th Semantic Web Applications and Tools for Life Sciences International Conference, 2015

2015 Disease Ontology update: DO's expanded curation activities to connect disease-related data.

Elvira Mitraka, Lynn M. Schriml

Proceedings of the International Conference on Biomedical Ontology, 2015

2012

Disease Ontology: a backbone for disease semantic integration.

Lynn M. Schriml, Cesar Arze, Suvarna Nadendla, Yu-Wei Wayne Chang, Mark Mazaitis, Victor Felix, Gang Feng, Warren A. Kibbe

Nucleic Acids Res., 2012

2011

The Translational Medicine Ontology and Knowledge Base: driving personalized medicine by bridging the gap between bench and bedside.

Joanne S. Luciano, Bosse Andersson, Colin R. Batchelor, Olivier Bodenreider, Tim Clark, Christine K. Denney, Christopher Domarew, Thomas Gambet, Lee Harland, Anja Jentzsch, Vipul Kashyap, Peter J. Kos, Julia Kozlovsky, Timothy Lebo, M. Scott Marshall, Jamie P. McCusker, Deborah L. McGuinness, Chimezie Ogbuji, Elgar Pichler, Robert L. Powers, Eric Prud'hommeaux, Matthias Samwald, Lynn M. Schriml, Peter J. Tonellato, Patricia L. Whetzel, Jun Zhao, Susie Stephens, Michel Dumontier

J. Biomed. Semant., 2011

2010

GeMInA, Genomic Metadata for Infectious Agents, a geospatial surveillance pathogen database.

Lynn M. Schriml, Cesar Arze, Suvarna Nadendla, Anurhada Ganapathy, Victor Felix, Anup Mahurkar, Katherine H. Phillippy, Aaron Gussman, Samuel V. Angiuoli, Elodie Ghedin, Owen White, Neil Hall

Nucleic Acids Res., 2010

2007

Gemina: A Web-Based Epidemiology and Genomic Metadata System Designed to Identify Infectious Agents.

Lynn M. Schriml, Aaron Gussman, Kathy Phillippy, Samuel V. Angiuoli, Kumar Hari, Alan Goates, Ravi Jain, Tanja Davidsen, Anurhada Ganapathy, Elodie Ghedin, Steven Salzberg, Owen White, Neil Hall

Proceedings of the Intelligence and Security Informatics: Biosurveillance, 2007

2006

Database resources of the National Center for Biotechnology Information.

David L. Wheeler, Tanya Barrett, Dennis A. Benson, Stephen H. Bryant, Kathi Canese, Vyacheslav Chetvernin, Deanna M. Church, Michael DiCuccio, Ron Edgar, Scott Federhen, Lewis Y. Geer, Wolfgang Helmberg, Yuri Kapustin, David L. Kenton, Oleg Khovayko, David J. Lipman, Thomas L. Madden, Donna R. Maglott, James Ostell, Kim D. Pruitt, Gregory D. Schuler, Lynn M. Schriml, Edwin Sequeira, Stephen T. Sherry, Karl Sirotkin, Alexandre Souvorov, Grigory Starchenko, Tugba O. Suzek, Roman L. Tatusov, Tatiana A. Tatusova, Lukas Wagner, Eugene Yaschenko

Nucleic Acids Res., 2006

2005

Database resources of the National Center for Biotechnology Information.

David L. Wheeler, Tanya Barrett, Dennis A. Benson, Stephen H. Bryant, Kathi Canese, Deanna M. Church, Michael DiCuccio, Ron Edgar, Scott Federhen, Wolfgang Helmberg, David L. Kenton, Oleg Khovayko, David J. Lipman, Thomas L. Madden, Donna R. Maglott, James Ostell, Joan U. Pontius, Kim D. Pruitt, Gregory D. Schuler, Lynn M. Schriml, Edwin Sequeira, Steven T. Sherry, Karl Sirotkin, Grigory Starchenko, Tugba O. Suzek, Roman L. Tatusov, Tatiana A. Tatusova, Lukas Wagner, Eugene Yaschenko

Nucleic Acids Res., 2005

2004

atabase resources of the National Center for Biotechnology Information: update.

David L. Wheeler, Deanna M. Church, Ron Edgar, Scott Federhen, Wolfgang Helmberg, Thomas L. Madden, Joan U. Pontius, Gregory D. Schuler, Lynn M. Schriml, Edwin Sequeira, Tugba O. Suzek, Tatiana A. Tatusova, Lukas Wagner

Nucleic Acids Res., 2004

2003

Database resources of the National Center for Biotechnology.

David L. Wheeler, Deanna M. Church, Scott Federhen, Alex E. Lash, Thomas L. Madden, Joan U. Pontius, Gregory D. Schuler, Lynn M. Schriml, Edwin Sequeira, Tatiana A. Tatusova, Lukas Wagner

Nucleic Acids Res., 2003

2002

Database resources of the National Center for Biotechnology Information: 2002 update.

David L. Wheeler, Deanna M. Church, Alex E. Lash, Detlef D. Leipe, Thomas L. Madden, Joan U. Pontius, Gregory D. Schuler, Lynn M. Schriml, Tatiana A. Tatusova, Lukas Wagner, Barbara A. Rapp

Nucleic Acids Res., 2002

2001

Database resources of the National Center for Biotechnology Information.

David L. Wheeler, Deanna M. Church, Alex E. Lash, Detlef D. Leipe, Thomas L. Madden, Joan U. Pontius, Gregory D. Schuler, Lynn M. Schriml, Tatiana A. Tatusova, Lukas Wagner, Barbara A. Rapp

Nucleic Acids Res., 2001