Lydie Lane

According to our database, Lydie Lane authored at least 14 papers between 2009 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

Protein function prediction as approximate semantic entailment.

Maxat Kulmanov, Francisco J. Guzmán-Vega, Paula Duek Roggli, Lydie Lane, Stefan T. Arold, Robert Hoehndorf

Nat. Mac. Intell., 2024

2023

A federated query between neXtProt and OrthoDB retrieves 44 uncharacterized human proteins highly expressed in the brain and conserved in Drosophila melanogaster.

Lydie Lane, Kasun Samarasinghe, Pierre-André Michel

Proceedings of the 14th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences (SWAT4HCLS 2023), 2023

2021

Functionathon: a manual data mining workflow to generate functional hypotheses for uncharacterized human proteins and its application by undergraduate students.

Paula Duek Roggli, Camille Mary, Monique Zahn-Zabal, Amos Bairoch, Lydie Lane

Database J. Biol. Databases Curation, 2021

2020

The neXtProt knowledgebase in 2020: data, tools and usability improvements.

Monique Zahn-Zabal, Pierre-André Michel, Alain Gateau, Frédéric Nikitin, Mathieu Schaeffer, Estelle Audot, Pascale Gaudet, Paula Duek Roggli, Daniel Dinis Teixeira, Valentine Rech de Laval, Kasun Samarasinghe, Amos Bairoch, Lydie Lane

Nucleic Acids Res., 2020

2017

The neXtProt knowledgebase on human proteins: 2017 update.

Pascale Gaudet, Pierre-André Michel, Monique Zahn-Zabal, Aurore Britan, Isabelle Cusin, Marcin Domagalski, Paula Duek Roggli, Alain Gateau, Anne Gleizes, Valérie Hinard, Valentine Rech de Laval, JinJin Lin, Frédéric Nikitin, Mathieu Schaeffer, Daniel Dinis Teixeira, Lydie Lane, Amos Bairoch

Nucleic Acids Res., 2017

The neXtProt peptide uniqueness checker: a tool for the proteomics community.

Mathieu Schaeffer, Alain Gateau, Daniel Dinis Teixeira, Pierre-André Michel, Monique Zahn-Zabal, Lydie Lane

Bioinform., 2017

2016

PepPSy: a web server to prioritize gene products in experimental and biocuration workflows.

Olivier Sallou, Paula Duek Roggli, Thomas A. Darde, Olivier Collin, Lydie Lane, Frédéric Chalmel

Database J. Biol. Databases Curation, 2016

2015

Converting neXtProt into Linked Data and nanopublications.

Christine Chichester, Oliver Karch, Pascale Gaudet, Lydie Lane, Barend Mons, Amos Bairoch

Semantic Web, 2015

The neXtProt knowledgebase on human proteins: current status.

Pascale Gaudet, Pierre-André Michel, Monique Zahn-Zabal, Isabelle Cusin, Paula Duek Roggli, Olivier Evalet, Alain Gateau, Anne Gleizes, Mario Pereira, Daniel Dinis Teixeira, Ying Zhang, Lydie Lane, Amos Bairoch

Nucleic Acids Res., 2015

2014

Querying neXtProt nanopublications and their value for insights on sequence variants and tissue expression.

Christine Chichester, Pascale Gaudet, Oliver Karch, Paul Groth, Lydie Lane, Amos Bairoch, Barend Mons, Antonis Loizou

J. Web Semant., 2014

Fifteen years SIB Swiss Institute of Bioinformatics: life science databases, tools and support.

Heinz Stockinger, Adrian M. Altenhoff, Konstantin Arnold, Amos Bairoch, Frederic B. Bastian, Sven Bergmann, Lydie Bougueleret, Philipp Bucher, Mauro Delorenzi, Lydie Lane, Philippe Le Mercier, Frédérique Lisacek, Olivier Michielin, Patricia M. Palagi, Jacques Rougemont, Torsten Schwede, Christian von Mering, Erik van Nimwegen, Daniel Walther, Ioannis Xenarios, Mihaela Zavolan, Evgeny M. Zdobnov, Vincent Zoete, Ron D. Appel

Nucleic Acids Res., 2014

2012

neXtProt: a knowledge platform for human proteins.

Lydie Lane, Ghislaine Argoud-Puy, Aurore Britan, Isabelle Cusin, Paula Duek Roggli, Olivier Evalet, Alain Gateau, Pascale Gaudet, Anne Gleizes, Alexandre Masselot, Catherine Zwahlen, Amos Bairoch

Nucleic Acids Res., 2012

2011

A Preliminary Study on the Prediction of Human Protein Functions.

Guido Bologna, Anne-Lise Veuthey, Marco Pagni, Lydie Lane, Amos Bairoch

Proceedings of the Foundations on Natural and Artificial Computation, 2011

2009

Collaborative annotation of genes and proteins between UniProtKB/Swiss-Prot and dictyBase.

Pascale Gaudet, Lydie Lane, Petra Fey, Alan J. Bridge, Sylvain Poux, Andrea H. Auchincloss, Kristian B. Axelsen, Silvia Braconi-Quintaje, Emmanuel Boutet, P. Brown, Elisabeth Coudert, Ruchira S. Datta, W. C. de Lima, Tulio de Oliveira, Severine Duvaud, N. Farriol-Mathis, Serenella Ferro-Rojas, Marc Feuermann, Alain Gateau, Ursula Hinz, Chantal Hulo, Janet James, Silvia Jimenez, Florence Jungo, Guillaume Keller, Phillippe Lemercier, Damien Lieberherr, Madelaine Moinat, Anastasia N. Nikolskaya, Ivo Pedruzzi, Catherine Rivoire, Bernd Roechert, Michel Schneider, E. Stanley, Michael Tognolli, Kimmen Sjölander, Lydie Bougueleret, Rex L. Chisholm, Amos Bairoch

Database J. Biol. Databases Curation, 2009