Lun Hu

Orcid: 0000-0002-1591-8549

According to our database1, Lun Hu authored at least 86 papers between 2015 and 2025.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

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Bibliography

2025
Regulation-aware graph learning for drug repositioning over heterogeneous biological network.
Inf. Sci., 2025

2024
Learning Sequential and Structural Dependencies Between Nucleotides for RNA N6-Methyladenosine Site Identification.
IEEE CAA J. Autom. Sinica, October, 2024

Motif-Aware miRNA-Disease Association Prediction via Hierarchical Attention Network.
IEEE J. Biomed. Health Informatics, July, 2024

Multi-Axis Attention with Convolution Parallel Block for Organoid Segmentation.
IEEE CAA J. Autom. Sinica, May, 2024

Discovering Consensus Regions for Interpretable Identification of RNA N6-Methyladenosine Modification Sites via Graph Contrastive Clustering.
IEEE J. Biomed. Health Informatics, April, 2024

Fuzzy-Based Deep Attributed Graph Clustering.
IEEE Trans. Fuzzy Syst., April, 2024

Fusing Higher and Lower-Order Biological Information for Drug Repositioning via Graph Representation Learning.
IEEE Trans. Emerg. Top. Comput., 2024

GGANet: A Model for the Prediction of MiRNA-Drug Resistance Based on Contrastive Learning and Global Attention.
Proceedings of the Advanced Intelligent Computing in Bioinformatics, 2024

IDHPre: Intradialytic Hypotension Prediction Model Based on Fully Observed Features.
Proceedings of the Advanced Intelligent Computing in Bioinformatics, 2024

Dual-Channel Learning Framework for Drug-Drug Interaction Prediction via Relation-Aware Heterogeneous Graph Transformer.
Proceedings of the Thirty-Eighth AAAI Conference on Artificial Intelligence, 2024

2023
Biocaiv: an integrative webserver for motif-based clustering analysis and interactive visualization of biological networks.
BMC Bioinform., December, 2023

Artificial intelligence accelerates multi-modal biomedical process: A Survey.
Neurocomputing, November, 2023

FCAN-MOPSO: An Improved Fuzzy-Based Graph Clustering Algorithm for Complex Networks With Multiobjective Particle Swarm Optimization.
IEEE Trans. Fuzzy Syst., October, 2023

iGRLDTI: an improved graph representation learning method for predicting drug-target interactions over heterogeneous biological information network.
Bioinform., August, 2023

GA-ENs: A novel drug-target interactions prediction method by incorporating prior Knowledge Graph into dual Wasserstein Generative Adversarial Network with gradient penalty.
Appl. Soft Comput., May, 2023

Incorporating higher order network structures to improve miRNA-disease association prediction based on functional modularity.
Briefings Bioinform., January, 2023

Predicting Drug-Target Interactions Over Heterogeneous Information Network.
IEEE J. Biomed. Health Informatics, 2023

PPAEDTI: Personalized Propagation Auto-Encoder Model for Predicting Drug-Target Interactions.
IEEE J. Biomed. Health Informatics, 2023

PPISB: A Novel Network-Based Algorithm of Predicting Protein-Protein Interactions With Mixed Membership Stochastic Blockmodel.
IEEE ACM Trans. Comput. Biol. Bioinform., 2023

Predicting Protein-Protein Interactions Using Sequence and Network Information via Variational Graph Autoencoder.
IEEE ACM Trans. Comput. Biol. Bioinform., 2023

Knowledge graph embedding for profiling the interaction between transcription factors and their target genes.
PLoS Comput. Biol., 2023

A survey of transformer-based multimodal pre-trained modals.
Neurocomputing, 2023

Multi-level Subgraph Representation Learning for Drug-Disease Association Prediction Over Heterogeneous Biological Information Network.
Proceedings of the Advanced Intelligent Computing Technology and Applications, 2023

A Deep Learning Approach Incorporating Data Missing Mechanism in Predicting Acute Kidney Injury in ICU.
Proceedings of the Advanced Intelligent Computing Technology and Applications, 2023

TransOrga: End-To-End Multi-modal Transformer-Based Organoid Segmentation.
Proceedings of the Advanced Intelligent Computing Technology and Applications, 2023

A Novel Graph Representation Learning Model for Drug Repositioning Using Graph Transition Probability Matrix Over Heterogenous Information Networks.
Proceedings of the Advanced Intelligent Computing Technology and Applications, 2023

Drug Repositioning Method Based on Pre-trained Large Model and Network Embedding Representation.
Proceedings of the IEEE International Conference on Data Mining, 2023

A contactless automated dynamic monitoring method for organoid morphology on the time axis.
Proceedings of the IEEE International Conference on Data Mining, 2023

Learning RNA sequence patterns to interpretably identify m6A modification sites.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2023

MLGL: Model-free Lesion Generation and Learning for Diabetic Retinopathy Diagnosis.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2023

Making the Implicit Explicit: Depression Detection in Web across Posted Texts and Images.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2023

CAMPEOD: A Cross Attention-Based Multi-Scale Patch Embedding Organoid Detection Model.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2023

2022
Generalized Nesterov's Acceleration-Incorporated, Non-Negative and Adaptive Latent Factor Analysis.
IEEE Trans. Serv. Comput., 2022

A Fast Fuzzy Clustering Algorithm for Complex Networks via a Generalized Momentum Method.
IEEE Trans. Fuzzy Syst., 2022

Identifying Protein Complexes From Protein-Protein Interaction Networks Based on Fuzzy Clustering and GO Semantic Information.
IEEE ACM Trans. Comput. Biol. Bioinform., 2022

An Algorithm of Inductively Identifying Clusters From Attributed Graphs.
IEEE Trans. Big Data, 2022

A Distributed Framework for Large-scale Protein-protein Interaction Data Analysis and Prediction Using MapReduce.
IEEE CAA J. Autom. Sinica, 2022

Automatic Detection of Melanins and Sebums from Skin Images Using a Generative Adversarial Network.
Cogn. Comput., 2022

RLFDDA: a meta-path based graph representation learning model for drug-disease association prediction.
BMC Bioinform., 2022

Multi-view heterogeneous molecular network representation learning for protein-protein interaction prediction.
BMC Bioinform., 2022

Effectively predicting HIV-1 protease cleavage sites by using an ensemble learning approach.
BMC Bioinform., 2022

A geometric deep learning framework for drug repositioning over heterogeneous information networks.
Briefings Bioinform., 2022

HINGRL: predicting drug-disease associations with graph representation learning on heterogeneous information networks.
Briefings Bioinform., 2022

iGRLCDA: identifying circRNA-disease association based on graph representation learning.
Briefings Bioinform., 2022

Attention-based Knowledge Graph Representation Learning for Predicting Drug-drug Interactions.
Briefings Bioinform., 2022

A deep learning method for repurposing antiviral drugs against new viruses via multi-view nonnegative matrix factorization and its application to SARS-CoV-2.
Briefings Bioinform., 2022

GraphTGI: an attention-based graph embedding model for predicting TF-target gene interactions.
Briefings Bioinform., 2022

A Novel Fuzzy-Based MOPSO Algorithm for Identifying Clusters From Complex Networks.
Proceedings of the 34th IEEE International Conference on Tools with Artificial Intelligence, 2022

MRLDTI: A Meta-path-Based Representation Learning Model for Drug-Target Interaction Prediction.
Proceedings of the Intelligent Computing Theories and Application, 2022

Predicting Drug-Disease Associations via Meta-path Representation Learning based on Heterogeneous Information Net works.
Proceedings of the Intelligent Computing Theories and Application, 2022

Cost and Care Insight: An Interactive and Scalable Hierarchical Learning System for Identifying Cost Saving Opportunities.
Proceedings of the Intelligent Computing Theories and Application, 2022

2021
An Effective Link-Based Clustering Algorithm for Detecting Overlapping Protein Complexes in Protein-Protein Interaction Networks.
IEEE Trans. Netw. Sci. Eng., 2021

Learning from low-rank multimodal representations for predicting disease-drug associations.
BMC Medical Informatics Decis. Mak., 2021

Exploiting higher-order patterns for community detection in attributed graphs.
Integr. Comput. Aided Eng., 2021

HiSCF: leveraging higher-order structures for clustering analysis in biological networks.
Bioinform., 2021

A survey on computational models for predicting protein-protein interactions.
Briefings Bioinform., 2021

SANE: A sequence combined attentive network embedding model for COVID-19 drug repositioning.
Appl. Soft Comput., 2021

Predicting Large-scale Protein-protein Interactions by Extracting Coevolutionary Patterns with MapReduce Paradigm.
Proceedings of the 2021 IEEE International Conference on Systems, Man, and Cybernetics, 2021

A Multi-graph Deep Learning Model for Predicting Drug-Disease Associations.
Proceedings of the Intelligent Computing Theories and Application, 2021

An Ensemble Learning Algorithm for Predicting HIV-1 Protease Cleavage Sites.
Proceedings of the Intelligent Computing Theories and Application, 2021

OnSum: Extractive Single Document Summarization Using Ordered Neuron LSTM.
Proceedings of the Intelligent Computing Theories and Application, 2021

Incorporating Generalized Momentum Method to Accelerate Clustering Analysis of Complex Networks.
Proceedings of the 17th IEEE International Conference on Automation Science and Engineering, 2021

2020
A Variational Bayesian Framework for Cluster Analysis in a Complex Network.
IEEE Trans. Knowl. Data Eng., 2020

Non-Negativity Constrained Missing Data Estimation for High-Dimensional and Sparse Matrices from Industrial Applications.
IEEE Trans. Cybern., 2020

Incorporating the Coevolving Information of Substrates in Predicting HIV-1 Protease Cleavage Sites.
IEEE ACM Trans. Comput. Biol. Bioinform., 2020

Energy-aware task scheduling with time constraint for heterogeneous cloud datacenters.
Concurr. Comput. Pract. Exp., 2020

The identification of variable-length coevolutionary patterns for predicting HIV-1 protease cleavage sites.
Proceedings of the 2020 IEEE International Conference on Systems, Man, and Cybernetics, 2020

A Novel Stochastic Block Model for Network-Based Prediction of Protein-Protein Interactions.
Proceedings of the Intelligent Computing Theories and Application, 2020

Embracing Disease Progression with a Learning System for Real World Evidence Discovery.
Proceedings of the Intelligent Computing Theories and Application, 2020

A Highly Efficient Biomolecular Network Representation Model for Predicting Drug-Disease Associations.
Proceedings of the Intelligent Computing Methodologies - 16th International Conference, 2020

2019
Efficiently Detecting Protein Complexes from Protein Interaction Networks via Alternating Direction Method of Multipliers.
IEEE ACM Trans. Comput. Biol. Bioinform., 2019

Automatic hierarchy classification in venation networks using directional morphological filtering for hierarchical structure traits extraction.
Comput. Biol. Chem., 2019

A fast algorithm to identify coevolutionary patterns from protein sequences based on tree-based data structure.
Proceedings of the 2019 IEEE International Conference on Systems, Man and Cybernetics, 2019

A Gated Recurrent Unit Model for Drug Repositioning by Combining Comprehensive Similarity Measures and Gaussian Interaction Profile Kernel.
Proceedings of the Intelligent Computing Theories and Application, 2019

Learning from Deep Representations of Multiple Networks for Predicting Drug-Target Interactions.
Proceedings of the Intelligent Computing Theories and Application, 2019

Predicting Hospital Readmission of Diabetics using Deep Forest.
Proceedings of the 2019 IEEE International Conference on Healthcare Informatics, 2019

2018
A gene-phenotype relationship extraction pipeline from the biomedical literature using a representation learning approach.
Bioinform., 2018

Learning Latent Factors for Community Identification and Summarization.
IEEE Access, 2018

2017
Extracting Coevolutionary Features from Protein Sequences for Predicting Protein-Protein Interactions.
IEEE ACM Trans. Comput. Biol. Bioinform., 2017

Efficiently predicting large-scale protein-protein interactions using MapReduce.
Comput. Biol. Chem., 2017

Identifying overlapping protein complexes in yeast protein interaction network via fuzzy clustering.
Proceedings of the 2017 IEEE International Conference on Fuzzy Systems, 2017

Discovering second-order sub-structure associations in drug molecules for side-effect prediction.
Proceedings of the 2017 IEEE International Conference on Bioinformatics and Biomedicine, 2017

Bar charts detection and analysis in biomedical literature of PubMed Central.
Proceedings of the AMIA 2017, 2017

2016
Fuzzy Clustering in a Complex Network Based on Content Relevance and Link Structures.
IEEE Trans. Fuzzy Syst., 2016

InDel marker detection by integration of multiple softwares using machine learning techniques.
BMC Bioinform., 2016

2015
A density-based clustering approach for identifying overlapping protein complexes with functional preferences.
BMC Bioinform., 2015


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