Luiz M. R. Gadelha Jr.

According to our database, Luiz M. R. Gadelha Jr. authored at least 29 papers between 2001 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2024

HIHISIV: a database of gene expression in HIV and SIV host immune response.

Raquel Lopes Costa, Luiz M. R. Gadelha Jr., Mirela D'arc, Marcelo Ribeiro-Alves, David L. Robertson, Jean-Marc Schwartz, Marcelo A. Soares, Fábio Porto

BMC Bioinform., December, 2024

Evaluating the method reproducibility of deep learning models in the biodiversity domain.

Waqas Ahmed, Vamsi Krishna Kommineni, Birgitta König-Ries, Jitendra Gaikwad, Luiz M. R. Gadelha Jr., Sheeba Samuel

CoRR, 2024

2023

MAW: the reproducible Metabolome Annotation Workflow for untargeted tandem mass spectrometry.

Mahnoor Zulfiqar, Luiz M. R. Gadelha Jr., Christoph Steinbeck, Maria Sorokina, Kristian Peters

J. Cheminformatics, December, 2023

The German Human Genome-Phenome Archive in an International Context: Toward a Federated Infrastructure for Managing and Analyzing Genomics and Health Data.

Luiz M. R. Gadelha Jr., Jan Eufinger

Proceedings of the 1st Conference on Research Data Infrastructure - Connecting Communities, 2023

2022

Parallel Performance and I/O Profiling of HPC RNA-Seq Applications.

Lucas Cruz, Micaella Coelho, Marcelo Galheigo, André Ramos Carneiro, Diego Carvalho, Luiz M. R. Gadelha Jr., Francieli Zanon Boito, Philippe O. A. Navaux, Carla Osthoff, Kary A. C. S. Ocaña

Computación y Sistemas, 2022

Toward a Framework for Integrative, FAIR, and Reproducible Management of Data on the Dynamic Balance of Microbial Communities.

Luiz M. R. Gadelha Jr., Martin Hohmuth, Mahnoor Zulfiqar, David Schöne, Sheeba Samuel, Maria Sorokina, Christoph Steinbeck, Birgitta König-Ries

Proceedings of the 18th IEEE International Conference on e-Science, 2022

ParslRNA-Seq: An Efficient and Scalable RNAseq Analysis Workflow for Studies of Differentiated Gene Expression.

Kary A. C. S. Ocaña, Lucas Cruz, Micaella Coelho, Rafael Terra, Marcelo Galheigo, Andre Ramos Carneiro, Diego Carvalho, Luiz M. R. Gadelha Jr., Francieli Zanon Boito, Philippe O. A. Navaux, Carla Osthoff

Proceedings of the High Performance Computing - 9th Latin American Conference, 2022

2021

A survey of biodiversity informatics: Concepts, practices, and challenges.

Luiz M. R. Gadelha Jr., Pedro C. de Siracusa, Eduardo Couto Dalcin, Luís Alexandre Estevão da Silva, Douglas Adriano Augusto, Eduardo Krempser, Helen Michelle Affe, Raquel Lopes Costa, Maria Luiza Mondelli, Pedro Milet Meirelles, Fabiano L. Thompson, Marcia Chame, Artur Ziviani, Marinez Ferreira de Siqueira

WIREs Data Mining Knowl. Discov., 2021

Capturing and Semantically Describing Provenance to Tell the Story of R Scripts.

Maria Luiza Mondelli, Sheeba Samuel, Birgitta König-Ries, Luiz M. R. Gadelha Jr.

Proceedings of the 17th IEEE International Conference on eScience, 2021

2020

BioinfoPortal: A scientific gateway for integrating bioinformatics applications on the Brazilian national high-performance computing network.

Kary A. C. S. Ocaña, Marcelo Galheigo, Carla Osthoff, Luiz M. R. Gadelha Jr., Fábio Porto, Antônio Tadeu A. Gomes, Daniel de Oliveira, Ana Tereza Ribeiro de Vasconcelos

Future Gener. Comput. Syst., 2020

2019

SISS-Geo: Leveraging Citizen Science to Monitor Wildlife Health Risks in Brazil.

Marcia Chame, Helio J. C. Barbosa, Luiz M. R. Gadelha Jr., Douglas Adriano Augusto, Eduardo Krempser, Livia Abdalla

J. Heal. Informatics Res., 2019

O Que os Países escutam: Analisando a Rede de Gêneros Musicais ao Redor do Mundo.

Maria Luiza Mondelli, Luiz M. R. Gadelha Jr., Artur Ziviani

Braz. J. Inf. Syst., 2019

Exploring Reproducibility and FAIR Principles in Data Science Using Ecological Niche Modeling as a Case Study.

Maria Luiza Mondelli, A. Townsend Peterson, Luiz M. R. Gadelha Jr.

Proceedings of the Advances in Conceptual Modeling, 2019

Towards a Science Gateway for Bioinformatics: Experiences in the Brazilian System of High Performance Computing.

Kary Ann del Carmen Ocaña Gautherot, Marcelo Galheigo, Carla Osthoff, Luiz M. R. Gadelha Jr., Antônio Tadeu A. Gomes, Daniel de Oliveira, Fábio Porto, Ana Tereza Ribeiro de Vasconcelos

Proceedings of the 19th IEEE/ACM International Symposium on Cluster, 2019

2018

A Survey of e-Biodiversity: Concepts, Practices, and Challenges.

Luiz M. R. Gadelha Jr., Pedro C. de Siracusa, Artur Ziviani, Eduardo Couto Dalcin, Helen Michelle Affe, Marinez Ferreira de Siqueira, Luís Alexandre Estevão da Silva, Douglas Adriano Augusto, Eduardo Krempser, Marcia Chame, Raquel Lopes Costa, Pedro Milet Meirelles, Fabiano L. Thompson

CoRR, 2018

BioWorkbench: A High-Performance Framework for Managing and Analyzing Bioinformatics Experiments.

Maria Luiza Mondelli, Thiago Magalhães, Guilherme Loss, Michael Wilde, Ian T. Foster, Marta Mattoso, Daniel S. Katz, Helio J. C. Barbosa, Ana Tereza Ribeiro de Vasconcelos, Kary A. C. S. Ocaña, Luiz M. R. Gadelha Jr.

CoRR, 2018

2017

Model-R: A Framework for Scalable and Reproducible Ecological Niche Modeling.

Andrea Sánchez-Tapia, Marinez Ferreira de Siqueira, Rafael Oliveira Lima, Felipe Sodré M. Barros, Guilherme M. Gall, Luiz M. R. Gadelha Jr., Luís Alexandre Estevão da Silva, Carla Osthoff

Proceedings of the High Performance Computing - 4th Latin American Conference, 2017

2015

BaMBa: towards the integrated management of Brazilian marine environmental data.

Pedro Milet Meirelles, Luiz M. R. Gadelha Jr., Ronaldo Bastos Francini-Filho, Rodrigo Leão de Moura, Gilberto Menezes Amado-Filho, Alex Cardoso Bastos, Rodolfo Pinheiro da Rocha Paranhos, Carlos Eduardo Rezende, Jean Swings, Eduardo Siegle, Nils Edvin Asp Neto, Sigrid Neumann Leitão, Ricardo Coutinho, Marta Mattoso, Paulo S. Salomon, Rogério A. B. Valle, Renato Crespo Pereira, Ricardo Henrique Kruger, Cristiane Thompson, Fabiano L. Thompson

Database J. Biol. Databases Curation, 2015

2014

Conceptual View Representation of the Brazilian Information System on Antarctic Environmental Research.

Rocío Zorrilla, Maira Poltosi, Luiz M. R. Gadelha Jr., Fábio Porto, Ana Maria de Carvalho Moura, A. Dalto, Helena P. Lavrado, Yocie Yoneshigue-Valentin, M. Tenório, E. Xavier

Data Sci. J., 2014

Applying Provenance to Protect Attribution in Distributed Computational Scientific Experiments.

Luiz M. R. Gadelha Jr., Marta Mattoso

Proceedings of the Provenance and Annotation of Data and Processes, 2014

2013

Provenance traces of the swift parallel scripting system.

Luiz M. R. Gadelha Jr., Michael Wilde, Marta Mattoso, Ian T. Foster

Proceedings of the Joint 2013 EDBT/ICDT Conferences, 2013

2012

MTCProv: a practical provenance query framework for many-task scientific computing.

Luiz M. R. Gadelha Jr., Michael Wilde, Marta Mattoso, Ian T. Foster

Distributed Parallel Databases, 2012

2011

Provenance management in Swift.

Luiz M. R. Gadelha Jr., Ben Clifford, Marta Mattoso, Michael Wilde, Ian T. Foster

Future Gener. Comput. Syst., 2011

Provenance Query Patterns for Many-Task Scientific Computing.

Luiz M. R. Gadelha Jr., Marta Mattoso, Michael Wilde, Ian T. Foster

Proceedings of the 3rd Workshop on the Theory and Practice of Provenance, 2011

2010

Towards a Threat Model for Provenance in e-Science.

Luiz M. R. Gadelha Jr., Marta Mattoso, Michael Wilde, Ian T. Foster

Proceedings of the Provenance and Annotation of Data and Processes, 2010

2008

Kairos: An Architecture for Securing Authorship and Temporal Information of Provenance Data in Grid-Enabled Workflow Management Systems.

Luiz M. R. Gadelha Jr., Marta Mattoso

Proceedings of the Fourth International Conference on e-Science, 2008

A Lightweight Middleware Monitor for Distributed Scientific Workflows.

Sérgio Manuel Serra da Cruz, Fabrício Nogueira da Silva, Luiz M. R. Gadelha Jr., Maria Cláudia Reis Cavalcanti, Maria Luiza Machado Campos, Marta Mattoso

Proceedings of the 8th IEEE International Symposium on Cluster Computing and the Grid (CCGrid 2008), 2008

2007

On the management of grid credentials.

Luiz M. R. Gadelha Jr., Bruno Schulze

Proceedings of the 5th International Workshop on Middleware for Grid Computing (MGC 2007), 2007

2001

An Efficient Strategy for Word-Cycle Completion in Finitely Presented Groups.

Luiz M. R. Gadelha Jr., Mauricio Ayala-Rincón

Proceedings of the 21st International Conference of the Chilean Computer Science Society (SCCC 2001), 2001