Luís Pedro Coelho

According to our database, Luís Pedro Coelho authored at least 17 papers between 2006 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

For long-term sustainable software in bioinformatics.

Luís Pedro Coelho

PLoS Comput. Biol., 2024

2023

ResFinderFG v2.0: a database of antibiotic resistance genes obtained by functional metagenomics.

Rémi Gschwind, Svetlana Ugarcina perovic, Maja Weiss, Marie Petitjean, Julie Lao, Luís Pedro Coelho, Etienne Ruppé

Nucleic Acids Res., July, 2023

SemiBin2: self-supervised contrastive learning leads to better MAGs for short- and long-read sequencing.

Shaojun Pan, Xing-Ming Zhao, Luís Pedro Coelho

Bioinform., 2023

2022

EXPERT: transfer learning-enabled context-aware microbial community classification.

Hui Chong, Yuguo Zha, Qingyang Yu, Mingyue Cheng, Guangzhou Xiong, Nan Wang, Xinhe Huang, Shijuan Huang, Chuqing Sun, Sicheng Wu, Wei-Hua Chen, Luís Pedro Coelho, Kang Ning

Briefings Bioinform., 2022

2020

proGenomes2: an improved database for accurate and consistent habitat, taxonomic and functional annotations of prokaryotic genomes.

Daniel R. Mende, Ivica Letunic, Oleksandr M. Maistrenko, Thomas S. B. Schmidt, Alessio Milanese, Lucas Paoli, Ana Hernández-Plaza, Askarbek N. Orakov, Sofia K. Forslund, Shinichi Sunagawa, Georg Zeller, Jaime Huerta-Cepas, Luís Pedro Coelho, Peer Bork

Nucleic Acids Res., 2020

2016

MOCAT2: a metagenomic assembly, annotation and profiling framework.

Jens Roat Kultima, Luís Pedro Coelho, Kristoffer Forslund, Jaime Huerta-Cepas, Simone S. Li, Marja Driessen, Anita Yvonne Voigt, Georg Zeller, Shinichi Sunagawa, Peer Bork

Bioinform., 2016

2015

Automatic determination of NET (neutrophil extracellular traps) coverage in fluorescent microscopy images.

Luís Pedro Coelho, Catarina Pato, Ana Friães, Ariane Neumann, Maren von Köckritz-Blickwede, Mário Ramirez, João André Carriço

Bioinform., 2015

2013

Determining the subcellular location of new proteins from microscope images using local features.

Luís Pedro Coelho, Joshua D. Kangas, Armaghan W. Naik, Elvira Osuna-Highley, Estelle Glory-Afshar, Margaret Fuhrman, Ramanuja Simha, Peter B. Berget, Jonathan W. Jarvik, Robert F. Murphy

Bioinform., 2013

2012

Mahotas: Open source software for scriptable computer vision

Luís Pedro Coelho

CoRR, 2012

2010

Structured literature image finder: Parsing text and figures in biomedical literature.

Amr Ahmed, Andrew Arnold, Luís Pedro Coelho, Joshua D. Kangas, Abdul-Saboor Sheikh, Eric P. Xing, William W. Cohen, Robert F. Murphy

J. Web Semant., 2010

Quantifying the distribution of probes between subcellular locations using unsupervised pattern unmixing.

Luís Pedro Coelho, Tao Peng, Robert F. Murphy

Bioinform., 2010

2009

Nuclear Segmentation in Microscope Cell Images: A Hand-Segmented Dataset and Comparison of Algorithms.

Luís Pedro Coelho, Aabid Shariff, Robert F. Murphy

Proceedings of the 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Boston, MA, USA, June 28, 2009

2008

Principles of Bioimage Informatics: Focus on Machine Learning of Cell Patterns.

Luís Pedro Coelho, Estelle Glory-Afshar, Joshua D. Kangas, Shannon Quinn, Aabid Shariff, Robert F. Murphy

Proceedings of the Linking Literature, Information, and Knowledge for Biology, 2008

Structured Literature Image Finder: Extracting Information from Text and Images in Biomedical Literature.

Luís Pedro Coelho, Amr Ahmed, Andrew Arnold, Joshua D. Kangas, Abdul-Saboor Sheikh, Eric P. Xing, William W. Cohen, Robert F. Murphy

Proceedings of the Linking Literature, Information, and Knowledge for Biology, 2008

Identifying Subcellular Locations from Images of Unknown Resolution.

Luís Pedro Coelho, Robert F. Murphy

Proceedings of the Bioinformatics Research and Development, 2008

2007

An Adaptive Multiresolution Approach to Fingerprint Recognition.

Amina Chebira, Luís Pedro Coelho, Aliaksei Sandryhaila, Stephen Lin, William G. Jenkinson, Jeremiah MacSleyne, Christopher Hoffman, Philipp Cuadra, Charles Jackson, Markus Püschel, Jelena Kovacevic

Proceedings of the International Conference on Image Processing, 2007

2006

Dotted Suffix Trees A Structure for Approximate Text Indexing.

Luís Pedro Coelho, Arlindo L. Oliveira

Proceedings of the String Processing and Information Retrieval, 2006