Lucila Ohno-Machado

Ludwig Christian G. Hinske

Inf. Serv. Use, 2022

IMI-CDE: an interactive interface for collaborative mapping of study variables to common data elements.

[BibT_eX]

[DOI]

Proceedings of the 10th IEEE International Conference on Healthcare Informatics, 2022

Disentangling and Characterizing Device Safety Signals and Learning Effects.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2022, 2022

Existing and emerging privacy challenges and solutions for federated data coordination.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2022, 2022

A Framework for Detecting Medical Device Safety Signals Confounded by Learning Effects Using Machine Learning.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2022, 2022

A Framework for Generating Synthetic Clinical Datasets with Learning Effects to Support Methods Development and Validation.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2022, 2022

2021

Calibrating predictive model estimates in a distributed network of patient data.

[BibT_eX]

[DOI]

J. Biomed. Informatics, 2021

Use of electronic health records to support a public health response to the COVID-19 pandemic in the United States: a perspective from 15 academic medical centers.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2021

Privacy-protecting, reliable response data discovery using COVID-19 patient observations.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2021

Benchmarking blockchain-based gene-drug interaction data sharing methods: A case study from the iDASH 2019 secure genome analysis competition blockchain track.

[BibT_eX]

[DOI]

Tyler Bath

Shuaicheng Ma

Nicholas D. Pattengale

Int. J. Medical Informatics, 2021

How do we share data in COVID-19 research? A systematic review of COVID-19 datasets in PubMed Central Articles.

[BibT_eX]

[DOI]

Briefings Bioinform., 2021

Early Prediction of Positive Clostridioides Difficile Test Results.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2021, American Medical Informatics Association Annual Symposium, San Diego, CA, USA, October 30, 2021, 2021

Privacy-Preserving Federated Biomedical Data Analysis.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2021, American Medical Informatics Association Annual Symposium, San Diego, CA, USA, October 30, 2021, 2021

2020

Secure and Differentially Private Logistic Regression for Horizontally Distributed Data.

[BibT_eX]

[DOI]

IEEE Trans. Inf. Forensics Secur., 2020

A systematic literature review of Native American and Pacific Islanders' perspectives on health data privacy in the United States.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2020

EXpectation Propagation LOgistic REgRession on permissioned blockCHAIN (ExplorerChain): decentralized online healthcare/genomics predictive model learning.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2020

A tutorial on calibration measurements and calibration models for clinical prediction models.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2020

COVID-19 TestNorm: A tool to normalize COVID-19 testing names to LOINC codes.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2020

Protecting patient privacy in survival analyses.

[BibT_eX]

[DOI]

Luca Bonomi

J. Am. Medical Informatics Assoc., 2020

Efficient determination of equivalence for encrypted data.

[BibT_eX]

[DOI]

Comput. Secur., 2020

Promoting Quality Face-to-Face Communication during Ophthalmology Encounters in the Electronic Health Record Era.

[BibT_eX]

[DOI]

Christopher A. Longhurst

Marlene Millen

Appl. Clin. Inform., 2020

Longitudinal Cohort Data Transformation Based on a Common Data Model and Metadata Standards: Examples from the Strong Heart Study.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2020, 2020

2019

Comparison of blockchain platforms: a systematic review and healthcare examples.

[BibT_eX]

[DOI]

Hugo Zavaleta Rojas

J. Am. Medical Informatics Assoc., 2019

Fair compute loads enabled by blockchain: sharing models by alternating client and server roles.

[BibT_eX]

[DOI]

Rodney A. Gabriel

J. Am. Medical Informatics Assoc., 2019

Evaluating and sharing global genetic ancestry in biomedical datasets.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2019

Current Applications of Blockchain Technology in Biomedical Research and Healthcare.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2019, 2019

VERTICOX: Vertically Distributed Cox Proportional Hazards Model.

[BibT_eX]

[DOI]

Luca Bonomi

Proceedings of the AMIA 2019, 2019

Engaging heart failure patients from a clinical data research network: A survey on willingness to participate in different types of research.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2019, 2019

2018

Reflections on the journey of editing a scientific journal.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2018

A diversified informatics portfolio covering health sciences and healthcare.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2018

Clinical informatics applications of medication reconciliation, decision support systems, and online portal patient-provider communications.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2018

Data science and artificial intelligence to improve clinical practice and research.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2018

Sharing data from electronic health records within, across, and beyond healthcare institutions: Current trends and perspectives.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2018

Informatics for all: from provider- to patient-based applications that can include family and friends.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2018

The role of informatics in promoting patient safety.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2018

Electronic health records and health information exchange.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2018

Clinical decision support: informatics interventions for better patient care.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2018

Enabling patients to be active participants in healthcare via informatics interventions.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2018

Clinical research informatics: a growing subspecialization of biomedical informatics.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2018

Informatics systems for health care providers, patients, and families.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2018

Special Focus on Biomedical Data Science.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2018

User needs analysis and usability assessment of DataMed - a biomedical data discovery index.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2018

DataMed - an open source discovery index for finding biomedical datasets.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2018

Biomedical informatics and data science: evolving fields with significant overlap.

[BibT_eX]

[DOI]

Patricia Flatley Brennan

Michael F. Chiang

J. Am. Medical Informatics Assoc., 2018

Perfectly Secure and Efficient Two-Party Electronic-Health-Record Linkage.

[BibT_eX]

[DOI]

IEEE Internet Comput., 2018

The Impact of Automatic Pre-annotation in Clinical Note Data Element Extraction - the CLEAN Tool.

[BibT_eX]

[DOI]

Stephanie Feudjio Feupe

CoRR, 2018

ModelChain: Decentralized Privacy-Preserving Healthcare Predictive Modeling Framework on Private Blockchain Networks.

[BibT_eX]

[DOI]

CoRR, 2018

Finding relevant biomedical datasets: the UC San Diego solution for the bioCADDIE Retrieval Challenge.

[BibT_eX]

[DOI]

Database J. Biol. Databases Curation, 2018

2017

Developing a framework for digital objects in the Big Data to Knowledge (BD2K) commons: Report from the Commons Framework Pilots workshop.

[BibT_eX]

[DOI]

J. Biomed. Informatics, 2017

Addressing Beacon re-identification attacks: quantification and mitigation of privacy risks.

[BibT_eX]

[DOI]

Suyash S. Shringarpure

J. Am. Medical Informatics Assoc., 2017

JAMIA is going green.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2017

Understanding and mitigating the digital divide in health care.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2017

Education of informatics professionals and development of electronic information resources for clinicians, patients, health scientists, and study participants.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2017

Advancing healthcare and biomedical research via new data-driven approaches.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2017

Electronic health records: usability and utilization by health care providers and patients.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2017

Health information technology and patient safety.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2017

Using health information technology for clinical decision support and predictive analytics.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2017

Blockchain distributed ledger technologies for biomedical and health care applications.

[BibT_eX]

[DOI]

Hyeon-Eui Kim

J. Am. Medical Informatics Assoc., 2017

iCONCUR: informed consent for clinical data and bio-sample use for research.

[BibT_eX]

[DOI]

Stephanie Feudjio Feupe

J. Am. Medical Informatics Assoc., 2017

Mechanisms to protect the privacy of families when using the transmission disequilibrium test in genome-wide association studies.

[BibT_eX]

[DOI]

Bioinform., 2017

PRINCESS: Privacy-protecting Rare disease International Network Collaboration via Encryption through Software guard extensionS.

[BibT_eX]

[DOI]

Süleyman Cenk Sahinalp

Bioinform., 2017

Information retrieval for biomedical datasets: the 2016 bioCADDIE dataset retrieval challenge.

[BibT_eX]

[DOI]

Database J. Biol. Databases Curation, 2017

MiRIAD update: using alternative polyadenylation, protein interaction network analysis and additional species to enhance exploration of the role of intragenic miRNAs and their host genes.

[BibT_eX]

[DOI]

Christian Hinske

Felipe R. C. dos Santos

Database J. Biol. Databases Curation, 2017

A publicly available benchmark for biomedical dataset retrieval: the reference standard for the 2016 bioCADDIE dataset retrieval challenge.

[BibT_eX]

[DOI]

Database J. Biol. Databases Curation, 2017

Prerequisites for International Exchanges of Health Information for Record Research: Comparison of Australian, Austrian, Finnish, Swiss, and US Policies.

[BibT_eX]

[DOI]

Proceedings of the MEDINFO 2017: Precision Healthcare through Informatics, 2017

Count Everything: Secure Count Query Framework Across Big Data Centers.

[BibT_eX]

[DOI]

Proceedings of the Summit on Clinical Research Informatics, 2017

Project A-G-T-C: Adding Genetic Test data in Clinical data warehouse.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2017, 2017

Using a Convolutional Neural Network for Automatic Medical Subject Headings (MeSH) Assignment.

[BibT_eX]

[DOI]

Wei Wei

Zhanglong Ji

Proceedings of the AMIA 2017, 2017

A Scalable Privacy-preserving Data Generation Methodology for Exploratory Analysis.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2017, 2017

Information Retrieval for Biomedical Datasets: The 2016 bioCADDIE Challenge.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2017, 2017

Consumer Views of Electronic Health and Genetic Data Sharing: Findings of a National Survey.

[BibT_eX]

[DOI]

Katherine K. Kim

Proceedings of the AMIA 2017, 2017

MALTASE: a Mobile AppLication To improve patients' Access to their data Sharing preferencE.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2017, 2017

Meeting User Needs for a Data Discovery Index of Biomedical Big Data.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2017, 2017

A Natural Language Processing System for Biomedical Dataset Retrieval.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2017, 2017

Honoring Patient's Data Sharing Preferences: Implementation Challenges.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2017, 2017

Self-Service Cohort Discovery across Five Academic Health Centers: Usage and User Evaluations of the University of California Research eXchange.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2017, 2017

2016

Secure Multi-pArty Computation Grid LOgistic REgression (SMAC-GLORE).

[BibT_eX]

[DOI]

BMC Medical Informatics Decis. Mak., 2016

Data-driven informatics tools targeting patients and providers.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2016

Building systems that change clinical practice and advance health sciences research.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2016

Data and the clinical decision support loop.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2016

A message to the next generation of biomedical informatics professionals.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2016

Using informatics to engage patients and healthcare providers.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2016

VERTIcal Grid lOgistic regression (VERTIGO).

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2016

Prerequisites for International Exchanges of Health Information: Comparison of Australian, Austrian, Finnish, Swiss, and US Privacy Policies.

[BibT_eX]

[DOI]

CoRR, 2016

Development of DataMed, a Data Discovery Index Prototype by bioCADDIE: Laying the Groundwork for Biomedical Data Discovery.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2016, 2016

Using the hierarchical structure of the Medical Subject Headings (MeSH) for automatic MeSH term assignment.

[BibT_eX]

[DOI]

Wei Wei

Zhanglong Ji

Proceedings of the AMIA 2016, 2016

Developing an Electronic Health Record-Based Cohort of Patients with Inflammatory Bowel Diseases for Observational Patient-Centered Outcomes Research.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2016, 2016

iCONCUR: informed CONsent for Clinical data and biosample Use for Research.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2016, 2016

Calibration of Predictive Models for Clinical Decision Making: Personalizing Prevention, Treatment, and Disease Progression.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2016, 2016

An Integrated Privacy Preserving Collaborative Analytics Platform: The PCORnet pSCANNER-PopMedNet TM Software Suite.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2016, 2016

Ensembles of NLP Tools for Data Element Extraction from Clinical Notes.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2016, 2016

An Online Delphi Consensus Panel for Prioritizing Person-Centered Outcomes Research Topics.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2016, 2016

Feasibility of Representing Data from Published Nursing Research Using the OMOP Common Data Model.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2016, 2016

Does Health Status Affect Patient Preferences for Sharing Clinical Data for Research?

[BibT_eX]

[DOI]

Proceedings of the AMIA 2016, 2016

A Scalable Dataset Indexing Infrastructure for the bioCADDIE Data Discovery System.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2016, 2016

Developing a predictive model for discharge delay in the Post-Anesthesia Care Unit.

[BibT_eX]

[DOI]

Rodney A. Gabriel

Jihoon Kim

Proceedings of the AMIA 2016, 2016

A Multi-Institutional Honest Broker in the Cloud.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2016, 2016

Categorizing Clinical Data to Make it Easier for Patients to Indicate Their Data Sharing Preferences.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2016, 2016

2015

Grid multi-category response logistic models.

[BibT_eX]

[DOI]

BMC Medical Informatics Decis. Mak., 2015

Choosing blindly but wisely: differentially private solicitation of DNA datasets for disease marker discovery.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2015

Trends in informatics and journal peer-review processes.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2015

Mining electronic health record data: finding the gold nuggets.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2015

Tailoring informatics interventions to patients and healthcare providers.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2015

A journal's role in resource sharing and reproducibility.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2015

Special online issue focusing on patients and caregivers.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2015

Highlights.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2015

A system to build distributed multivariate models and manage disparate data sharing policies: implementation in the scalable national network for effectiveness research.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2015

WebDISCO: a web service for distributed cox model learning without patient-level data sharing.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2015

Comparison of consumers' views on electronic data sharing for healthcare and research.

[BibT_eX]

[DOI]

Katherine K. Kim

Jill G. Joseph

J. Am. Medical Informatics Assoc., 2015

Trends in biomedical informatics: automated topic analysis of JAMIA articles.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2015

Patient privacy and "de-identified" health records in the genomic era.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2015, 2015

Transforming the National Department of Veterans Affairs Data Warehouse to the OMOP Common Data Model.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2015, 2015

Preserving Genome Privacy in Research Studies.

[BibT_eX]

[DOI]

Proceedings of the Medical Data Privacy Handbook, 2015

2014

Detecting inappropriate access to electronic health records using collaborative filtering.

[BibT_eX]

[DOI]

Mach. Learn., 2014

A community assessment of privacy preserving techniques for human genomes.

[BibT_eX]

[DOI]

BMC Medical Informatics Decis. Mak., 2014

Brief communication: pSCANNER: patient-centered Scalable National Network for Effectiveness Research.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2014

Disseminating informatics knowledge and training the next generation of leaders.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2014

Focusing on the patient: mHealth, social media, electronic health records, and decision support systems.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2014

Structuring text and standardizing data for clinical and population health applications.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2014

Networking the country to promote health and scientific discovery.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2014

Informatics support for clinical decisions.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2014

NIH's Big Data to Knowledge initiative and the advancement of biomedical informatics.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2014

The role of scientific publication in times of change.

[BibT_eX]

[DOI]

Ludwig Christian G. Hinske

J. Am. Medical Informatics Assoc., 2014

HUGO: Hierarchical mUlti-reference Genome cOmpression for aligned reads.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2014

Data governance requirements for distributed clinical research networks: triangulating perspectives of diverse stakeholders.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2014

PhenDisco: phenotype discovery system for the database of genotypes and phenotypes.

[BibT_eX]

[DOI]

Stephanie Feudjio Feupe

J. Am. Medical Informatics Assoc., 2014

Natural Language Processing in Biomedicine: A Unified System Architecture Overview.

[BibT_eX]

[DOI]

CoRR, 2014

MAGI: a Node.js web service for fast microRNA-Seq analysis in a GPU infrastructure.

[BibT_eX]

[DOI]

Bioinform., 2014

miRIAD - integrating microRNA inter- and intragenic data.

[BibT_eX]

[DOI]

Gustavo S. França

Hugo A. M. Torres

Daniel T. Ohara

Camila Miranda Lopes-Ramos

Database J. Biol. Databases Curation, 2014

A Keyword Suggestion Strategy Based on Citation Networks.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2014, 2014

Predictive Analytics in Healthcare (HPA): Considerations and Challenges.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2014, 2014

Trends in Publication of Nursing Informatics Research.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2014, 2014

Informatics without Borders: International Outreach of US-based Training Programs.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2014, 2014

Sharing My Health Data: A Survey of Data Sharing Preferences of Healthy Individuals.

[BibT_eX]

[DOI]

Elizabeth A. Bell

María Adela Grando

Proceedings of the AMIA 2014, 2014

2013

Differential-Private Data Publishing Through Component Analysis.

[BibT_eX]

[DOI]

Trans. Data Priv., 2013

EXpectation Propagation LOgistic REgRession (EXPLORER): Distributed privacy-preserving online model learning.

[BibT_eX]

[DOI]

J. Biomed. Informatics, 2013

Natural language processing: algorithms and tools to extract computable information from EHRs and from the biomedical literature.

[BibT_eX]

[DOI]

Prakash M. Nadkarni

Kevin B. Johnson

J. Am. Medical Informatics Assoc., 2013

Data science and informatics: when it comes to biomedical data, is there a real distinction?

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2013

Health surveillance using the internet and other sources of information.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2013

Informatics that works for you.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2013

Sharing data for the public good and protecting individual privacy: informatics solutions to combine different goals.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2013

Privacy-preserving heterogeneous health data sharing.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2013

SHARE: system design and case studies for statistical health information release.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2013

Making it personal: translational bioinformatics.

[BibT_eX]

[DOI]

Atul J. Butte

J. Am. Medical Informatics Assoc., 2013

Abstractions for genomics.

[BibT_eX]

[DOI]

Commun. ACM, 2013

WebGLORE: a Web service for Grid LOgistic REgression.

[BibT_eX]

[DOI]

Bioinform., 2013

Biomedical CyberInfrastructure challenges.

[BibT_eX]

[DOI]

Claudiu Farcas

Natasha Balac

Proceedings of the Extreme Science and Engineering Discovery Environment: Gateway to Discovery, 2013

DELPHI: Data E-platform for personalized population health.

[BibT_eX]

[DOI]

Yannis Papakonstantinou

Fredric Raab

Kevin Patrick

Proceedings of the IEEE 15th International Conference on e-Health Networking, 2013

Nucleotide sequence alignment using sparse coding and belief propagation.

[BibT_eX]

[DOI]

Aminmohammad Roozgard

Proceedings of the 35th Annual International Conference of the IEEE Engineering in Medicine and Biology Society, 2013

Genome Sequence Compression with Distributed Source Coding.

[BibT_eX]

[DOI]

Proceedings of the 2013 Data Compression Conference, 2013

An Adaptive Difference Distribution-Based Coding with Hierarchical Tree Structure for DNA Sequence Compression.

[BibT_eX]

[DOI]

Proceedings of the 2013 Data Compression Conference, 2013

Training the Informatics Research Workforce, Part 2.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2013, 2013

2012

Grid Binary LOgistic REgression (GLORE): building shared models without sharing data.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2012

An improved model for predicting postoperative nausea and vomiting in ambulatory surgery patients using physician-modifiable risk factors.

[BibT_eX]

[DOI]

Pankaj Sarin

Richard D. Urman

J. Am. Medical Informatics Assoc., 2012

iDASH: integrating data for analysis, anonymization, and sharing.

[BibT_eX]

[DOI]

Nathaniel D. Heintzman

J. Am. Medical Informatics Assoc., 2012

Careers in informatics: a diversity of options with an abundance of jobs.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2012

Big science, big data, and a big role for biomedical informatics.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2012

Informatics 2.0: implications of social media, mobile health, and patient-reported outcomes for healthcare and individual privacy.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2012

Where do we stand in the maze of health information systems?

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2012

Cost-effectiveness of informatics and health IT: impact on finances and quality of care.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2012

Informatics research to enable clinically relevant, personalized genomic medicine.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2012

Computer-based safety surveillance and patient-centered health records.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2012

Reviewing social media use by clinicians.

[BibT_eX]

[DOI]

Marcio von Muhlen

J. Am. Medical Informatics Assoc., 2012

Calibrating predictive model estimates to support personalized medicine.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2012

A patient-driven adaptive prediction technique to improve personalized risk estimation for clinical decision support.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2012

Predicting accurate probabilities with a ranking loss.

[BibT_eX]

[DOI]

Proceedings of the 29th International Conference on Machine Learning, 2012

Privacy-Preserving Biometric System for Secure Fingerprint Authentication.

[BibT_eX]

[DOI]

Proceedings of the 2012 IEEE Second International Conference on Healthcare Informatics, 2012

SecUre Privacy-presERving Medical Image CompRessiOn (SUPERMICRO).

[BibT_eX]

[DOI]

Proceedings of the 2012 IEEE Second International Conference on Healthcare Informatics, 2012

A Robust Feature Selection Method for Novel Pre-microRNA Identification Using a Combination of Nucleotide-Structure Triplets.

[BibT_eX]

[DOI]

Petra Stepanowsky

Jihoon Kim

Proceedings of the 2012 IEEE Second International Conference on Healthcare Informatics, 2012

A Randomized Response Model for Privacy-Preserving Data Dissemination.

[BibT_eX]

[DOI]

Proceedings of the 2012 IEEE Second International Conference on Healthcare Informatics, 2012

Enhancing Twitter Data Analysis with Simple Semantic Filtering: Example in Tracking Influenza-Like Illnesses.

[BibT_eX]

[DOI]

Son Doan

Nigel Collier

Proceedings of the 2012 IEEE Second International Conference on Healthcare Informatics, 2012

Building an Ontology of Phenotypes for Existing GWAS Studies.

[BibT_eX]

[DOI]

Neda Alipanah

Hyeoneui Kim

Proceedings of the 2012 IEEE Second International Conference on Healthcare Informatics, 2012

Institutional Privacy-preserving Distributed binary Logistic Regression (IPDLR).

[BibT_eX]

[DOI]

Yuan Wu

Proceedings of the AMIA 2012, 2012

A Collaborative Framework for Distributed Privacy-Preserving Support Vector Machine Learning.

[BibT_eX]

[DOI]

Jialan Que

Proceedings of the AMIA 2012, 2012

Sharing Facebook Data For Research: Are College Students Willing to Donate their Data?

[BibT_eX]

[DOI]

Proceedings of the AMIA 2012, 2012

Selecting Cases for Whom Additional Tests Can Improve Prognostication.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2012, 2012

Identifying Age Variables in dbGaP using Natural Language Processing.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2012, 2012

2011

Translational bioinformatics: linking knowledge across biological and clinical realms.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2011

Innovative approaches to support patient decision making, improve safety, and enable large-scale clinical research.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2011

Use of electronic health record systems for decision support.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2011

Realizing the full potential of electronic health records: the role of natural language processing.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2011

Biomedical informatics: how we got here and where we are headed.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2011

A hybrid open-access model to bridge the publishing divide and reach out to a broader community.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2011

Informatics is about algorithms, systems, people, and social networks.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2011

Electronic health records and computer-based clinical decision support: are we there yet?

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2011

A new JAMIA.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2011

What's new in informatics.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2011

Natural language processing: an introduction.

[BibT_eX]

[DOI]

Prakash M. Nadkarni

Wendy Webber Chapman

J. Am. Medical Informatics Assoc., 2011

Evaluation of informatics systems: beyond RCTs and beyond the hospital.

[BibT_eX]

[DOI]

Harold P. Lehmann

J. Am. Medical Informatics Assoc., 2011

Trends in biomedical informatics: most cited topics from recent years.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2011

Using statistical and machine learning to help institutions detect suspicious access to electronic health records.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2011

AnyExpress: Integrated toolkit for analysis of cross-platform gene expression data using a fast interval matching algorithm.

[BibT_eX]

[DOI]

BMC Bioinform., 2011

2010

DSGeo: Software tools for cross-platform analysis of gene expression data in GEO.

[BibT_eX]

[DOI]

J. Biomed. Informatics, 2010

Automating pressure ulcer risk assessment using documented patient data.

[BibT_eX]

[DOI]

Int. J. Medical Informatics, 2010

Smart medical environment at the point of care: Auto-tracking clinical interventions at the bed side using RFID technology.

[BibT_eX]

[DOI]

Comput. Biol. Medicine, 2010

Assessing the quality of annotations in asthma gene expression experiments.

[BibT_eX]

[DOI]

BMC Bioinform., 2010

2009

Editorial: Outstanding Submissions to the AMIA Annual Symposium Now Featured in JAMIA.

[BibT_eX]

[DOI]

Randolph A. Miller

J. Am. Medical Informatics Assoc., 2009

Special Features: Presentation of the 2008 Morris F. Collen Award to Robert A. Greenes.

[BibT_eX]

[DOI]

Donald Ellison

Edward H. Shortliffe

J. Am. Medical Informatics Assoc., 2009

Using ambient intelligence for physiological monitoring.

[BibT_eX]

[DOI]

J. Ambient Intell. Smart Environ., 2009

Towards large-scale sample annotation in gene expression repositories.

[BibT_eX]

[DOI]

BMC Bioinform., 2009

Evaluation of a large-scale biomedical data annotation initiative.

[BibT_eX]

[DOI]

BMC Bioinform., 2009

2008

Application of Information Technology: SMART - An Integrated Wireless System for Monitoring Unattended Patients.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2008

Physiological signal monitoring in the waiting areas of an emergency room.

[BibT_eX]

[DOI]

Proceedings of the 3rd International ICST Conference on Body Area Networks, 2008

Improving Calibration of Logistic Regression Models by Local Estimates.

[BibT_eX]

[DOI]

Melanie Osl

Christian Baumgartner

Bernhard Tilg

Proceedings of the AMIA 2008, 2008

Comparison of RFID Systems for Tracking Clinical Interventions at the Bedside.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2008, 2008

2007

Effects of SVM parameter optimization on discrimination and calibration for post-procedural PCI mortality.

[BibT_eX]

[DOI]

J. Biomed. Informatics, 2007

Modeling Cancer: Integration of "omics" Information in Dynamic Systems.

[BibT_eX]

[DOI]

J. Bioinform. Comput. Biol., 2007

Automatic correspondence of tags and genes (ACTG): a tool for the analysis of SAGE, MPSS and SBS data.

[BibT_eX]

[DOI]

Bioinform., 2007

Rare Adverse Event Monitoring of Medical Devices with the Use of an Automated Surveillance Tool.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2007, 2007

2006

Representation in stochastic search for phylogenetic tree reconstruction.

[BibT_eX]

[DOI]

Stuart M. Shieber

J. Biomed. Informatics, 2006

Research Paper: Monitoring Device Safety in Interventional Cardiology.

[BibT_eX]

[DOI]

Michael E. Matheny

J. Am. Medical Informatics Assoc., 2006

Approximation properties of haplotype tagging.

[BibT_eX]

[DOI]

BMC Bioinform., 2006

2005

A global goodness-of-fit test for receiver operating characteristic curve analysis via the bootstrap method.

[BibT_eX]

[DOI]

Kelly H. Zou

Ion-Florin Talos

Daniel Goldberg-Zimring

J. Biomed. Informatics, 2005

Clinical machine learning.

[BibT_eX]

[DOI]

J. Biomed. Informatics, 2005

Discrimination and calibration of mortality risk prediction models in interventional cardiology.

[BibT_eX]

[DOI]

Michael E. Matheny

J. Biomed. Informatics, 2005

The use of receiver operating characteristic curves in biomedical informatics.

[BibT_eX]

[DOI]

J. Biomed. Informatics, 2005

Small, fuzzy and interpretable gene expression based classifiers.

[BibT_eX]

[DOI]

Eun-Young Kim

Bioinform., 2005

Combining Classifiers Using Their Receiver Operating Characteristics and Maximum Likelihood Estimation.

[BibT_eX]

[DOI]

Daniel Goldberg-Zimring

Asim Mian

Kelly H. Zou

Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2005

Demonstration of SMART (Scalable Medical Alert Response Technology).

[BibT_eX]

[DOI]

Proceedings of the AMIA 2005, 2005

WLAN PDA to improve efficiency in patient care documentation.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2005, 2005

Real-Time ECG Algorithms for Ambulatory Patient Monitoring.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2005, 2005

Exploration of a Bayesian Updating Tool to Provide Real-Time Safety Monitoring for New Medical Devices.

[BibT_eX]

[DOI]

Michael E. Matheny

Proceedings of the AMIA 2005, 2005

Training Health Informatics Professionals in Brazil: Rationale for the Development of a New Certificate Program.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2005, 2005

2004

The Goodman-Kruskal coefficient and its applications in genetic diagnosis of cancer.

[BibT_eX]

[DOI]

IEEE Trans. Biomed. Eng., 2004

Research on machine learning issues in biomedical informatics modeling.

[BibT_eX]

[DOI]

J. Biomed. Informatics, 2004

A primer on gene expression and microarrays for machine learning researchers.

[BibT_eX]

[DOI]

J. Biomed. Informatics, 2004

A greedy algorithm for supervised discretization.

[BibT_eX]

[DOI]

J. Biomed. Informatics, 2004

Diagnostic accuracy of chest X-rays acquired using a digital camera for low-cost teleradiology.

[BibT_eX]

[DOI]

Int. J. Medical Informatics, 2004

Protecting patient privacy by quantifiable control of disclosures in disseminated databases.

[BibT_eX]

[DOI]

Paulo Sérgio Panse Silveira

Int. J. Medical Informatics, 2004

Multivariate selection of genetic markers in diagnostic classification.

[BibT_eX]

[DOI]

Artif. Intell. Medicine, 2004

International Training in Health Informatics: A Brazilian Experience.

[BibT_eX]

[DOI]

Proceedings of the MEDINFO 2004, 2004

2003

A neural network-based similarity index for clustering DNA microarray data.

[BibT_eX]

[DOI]

Tomohiro Sawa

Andreas Alexander Albrecht

Comput. Biol. Medicine, 2003

An Epicurean learning approach to gene-expression data classification.

[BibT_eX]

[DOI]

Artif. Intell. Medicine, 2003

Stochastic Algorithms for Gene Expression Analysis (Invited Talk).

[BibT_eX]

[DOI]

Winston Patrick Kuo

Proceedings of the Stochastic Algorithms: Foundations and Applications, 2003

Preoperative Information Management System using Wireless PDAs.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2003, 2003

Classification of Movement States in Parkinson's Disease Using a Wearable Ambulatory Monitor.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2003, 2003

2002

Classification of gene expression data using fuzzy logic.

[BibT_eX]

[DOI]

J. Intell. Fuzzy Syst., 2002

Visualization and evaluation of clusters for exploratory analysis of gene expression data.

[BibT_eX]

[DOI]

Ju-Han Kim

Isaac S. Kohane

J. Biomed. Informatics, 2002

Logistic regression and artificial neural network classification models: a methodology review.

[BibT_eX]

[DOI]

J. Biomed. Informatics, 2002

Generation of Dynamically Configured Check Lists for Intra-Operative Problems: Using a Set Covering Algorithm.

[BibT_eX]

[DOI]

Tomohiro Sawa

J. Am. Medical Informatics Assoc., 2002

Effects of Data Anonymization by Cell Suppression on Descriptive Statistics and Predictive Modeling Performance.

[BibT_eX]

[DOI]

J. Am. Medical Informatics Assoc., 2002

Disambiguation Data: Extracting Information from Anonymized Sources.

[BibT_eX]

[DOI]

Andreas Alexander Albrecht

J. Am. Medical Informatics Assoc., 2002

Analysis of matched mRNA measurements from two different microarray technologies.

[BibT_eX]

[DOI]

Bioinform., 2002

A Simulated Annealing and Resampling Method for Training Perceptrons to Classify Gene-Expression Data.

[BibT_eX]

[DOI]

C. K. Wong

Proceedings of the Artificial Neural Networks, 2002

Building an asynchronous web-based tool for machine learning classification.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2002, 2002

Evaluation of the Diagnostic Accuracy of Chest X-rays Acquired Using a Digital Camera for Low-cost Teleradiology.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2002, 2002

Pharmacokinetic Simulation of Muscle Relaxants: Prediction of Onset Based on Potency.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2002, 2002

Providing context-sensitive decision-support based on WHO guidelines.

[BibT_eX]

[DOI]

Heta N. Ray

Aziz A. Boxwala

Vishwanath Anantraman

Proceedings of the AMIA 2002, 2002

Comparing imperfect measurements with the Bland-Altman technique: application in gene expression analysis.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2002, 2002

Training in Medical Informatics in Northeastern Brazil.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2002, 2002

Gene expression levels in different stages of progression in oral squamous cell carcinoma.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2002, 2002

Open source handheld-based EMR for paramedics working in rural areas.

[BibT_eX]

[DOI]

Vishwanath Anantraman

Proceedings of the AMIA 2002, 2002

2001

Modeling Medical Prognosis: Survival Analysis Techniques.

[BibT_eX]

[DOI]

J. Biomed. Informatics, 2001

A Comparison of Machine Learning Methods for the Diagnosis of Pigmented Skin Lesions.

[BibT_eX]

[DOI]

J. Biomed. Informatics, 2001

Using patient-reportable clinical history factors to predict myocardial infarction.

[BibT_eX]

[DOI]

Comput. Biol. Medicine, 2001

Unsupervised Learning from Complex Data: The Matrix Incision Tree Algorithm.

[BibT_eX]

[DOI]

Ju-Han Kim

Isaac S. Kohane

Proceedings of the 6th Pacific Symposium on Biocomputing, 2001

Training in Medical Informatics: Combining Onsite and Online Instruction.

[BibT_eX]

[DOI]

Proceedings of the MEDINFO 2001, 2001

Hiding information by cell suppression.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2001, 2001

Generation of dynamically configured check lists for intra-operative problems using a set of covering algorithms.

[BibT_eX]

[DOI]

Tomohiro Sawa

Proceedings of the AMIA 2001, 2001

Finding appropriate clinical trials: evaluating encoded eligibility criteria with incomplete data.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2001, 2001

International Training in Medical Informatics: The Second Year of the Brazil/USA Project.

[BibT_eX]

[DOI]

Vishwanath Anantraman

Proceedings of the AMIA 2001, 2001

2000

A genetic algorithm approach to multi-disorder diagnosis.

[BibT_eX]

[DOI]

Artif. Intell. Medicine, 2000

Using electronic data to predict the probability of true bacteremia from positive blood cultures.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2000, 2000

Development and evaluation of models to predict death and myocardial infarction following coronary angioplasty and stenting.

[BibT_eX]

[DOI]

Jeffrey J. Popma

Proceedings of the AMIA 2000, 2000

GLIF3: the evolution of a guideline representation format.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2000, 2000

Decision trees and fuzzy logic: a comparison of models for the selection of measles vaccination strategies in Brazil.

[BibT_eX]

[DOI]

Ronilda Lacson

Eduardo Massad

Proceedings of the AMIA 2000, 2000

First Steps Towards Implementing an International Training Program in Medical Informatics: The Brazil/USA Project.

[BibT_eX]

[DOI]

Proceedings of the AMIA 2000, 2000

Major complications after angioplasty in patients with chronic renal failure: a comparison of predictive models.

[BibT_eX]

[DOI]

Ronilda C. Lacson

Proceedings of the AMIA 2000, 2000

Building knowledge in a complex preterm birth problem domain.

[BibT_eX]

[DOI]

Linda K. Goodwin

Sean Maher

Mary Ann Iannacchione

Proceedings of the AMIA 2000, 2000

Risk stratification in heart failure using artificial neural networks.

[BibT_eX]

[DOI]

Felipe Atienza

Nieves Martínez-Alzamora

José A. De Velasco

Proceedings of the AMIA 2000, 2000

1999

Using Boolean reasoning to anonymize databases.

[BibT_eX]

[DOI]

Artif. Intell. Medicine, 1999

Enhancing Arden Syntax for Clinical Trial Eligibility Criteria.

[BibT_eX]

[DOI]

Proceedings of the AMIA 1999, 1999

A genetic algorithm to select variables in logistic regression: example in the domain of myocardial infarction.

[BibT_eX]

[DOI]

Proceedings of the AMIA 1999, 1999

The C-Index as a Selection Tool in Decision Tree Construction: An Example in Myocardial Infarction.

[BibT_eX]

[DOI]

Gregory Sharp

Hamish Fraser

Proceedings of the AMIA 1999, 1999

Decision support for clinical trial eligibility determination in breast cancer.

[BibT_eX]

[DOI]

Proceedings of the AMIA 1999, 1999

Clinical Data Processing Tools: A Machine Learning Resource.

[BibT_eX]

[DOI]

Proceedings of the AMIA 1999, 1999

HealthAware: A Consumer Health Information Destination Which Links to a Health Care Delivery Network.

[BibT_eX]

[DOI]

Proceedings of the AMIA 1999, 1999

A framework and tools for authoring, editing, documenting, sharing, searching, navigating, and executing computer-based clinical guidelines.

[BibT_eX]

[DOI]

Proceedings of the AMIA 1999, 1999

Evaluation of Guidelines to Help Patients Recognize Myocardial Infarction.

[BibT_eX]

[DOI]

Proceedings of the AMIA 1999, 1999

Evaluating variable selection methods for diagnosis of myocardial infarction.

[BibT_eX]

[DOI]

Proceedings of the AMIA 1999, 1999

Self-Organizing Maps for Visualization of Medical Data Sets.

[BibT_eX]

[DOI]

Proceedings of the AMIA 1999, 1999

1998

Research Paper: The GuideLine Interchange Format: A Model for Representing Guidelines.

[BibT_eX]

[DOI]

Edward Pattison-Gordon

Robert A. Greenes

Edward H. Shortliffe

G. Octo Barnett

J. Am. Medical Informatics Assoc., 1998

Diagnosing Breast Cancer from FNAs: Variable Relevance in Neural Network and Logistic Regression Models.

[BibT_eX]

[DOI]

Donald Bialek

Proceedings of the MEDINFO '98, 1998

Comparison of multiple prediction models for ambulation following spinal cord injury.

[BibT_eX]

[DOI]

Todd Rowland

Proceedings of the AMIA 1998, 1998

Building manageable rough set classifiers.

[BibT_eX]

[DOI]

Todd Rowland

Proceedings of the AMIA 1998, 1998

Improving machine learning performance by removing redundant cases in medical data sets.

[BibT_eX]

[DOI]

Hamish S. F. Fraser

Proceedings of the AMIA 1998, 1998

Linking Health Education and Health Care Service Information via the WWW: The HealthAware Project.

[BibT_eX]

[DOI]

Proceedings of the AMIA 1998, 1998

1997

Modular Neural Networks for Medical Prognosis: Quantifying the Benefits of Combining Neural Networks for Survival Prediction.

[BibT_eX]

[DOI]

Mark A. Musen

Connect. Sci., 1997

Sequential versus standard neural networks for pattern recognition: An example using the domain of coronary heart disease.

[BibT_eX]

[DOI]

Mark A. Musen

Comput. Biol. Medicine, 1997

A comparison of Cox proportional hazards and artificial neural network models for medical prognosis.

[BibT_eX]

[DOI]

Comput. Biol. Medicine, 1997

A virtual repository approach to clinical and utilization studies: application in mammography as alternative to a national database.

[BibT_eX]

[DOI]

Proceedings of the AMIA 1997, 1997

1995

Learning Rare Categories in Backpropagation.

[BibT_eX]

[DOI]