Luciano Milanesi
Orcid: 0000-0002-1201-3939
According to our database1,
Luciano Milanesi
authored at least 139 papers
between 1992 and 2023.
Collaborative distances:
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Online presence:
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on zbmath.org
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on orcid.org
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Bibliography
2023
scMuffin: an R package to disentangle solid tumor heterogeneity by single-cell gene expression analysis.
BMC Bioinform., December, 2023
2022
Correction to: A Standards Organization for Open and FAIR Neuroscience: the International Neuroinformatics Coordinating Facility.
Neuroinformatics, 2022
A Standards Organization for Open and FAIR Neuroscience: the International Neuroinformatics Coordinating Facility.
Neuroinformatics, 2022
2021
Briefings Bioinform., 2021
2020
Integrating Petri Nets and Flux Balance Methods in Computational Biology Models: a Methodological and Computational Practice.
Fundam. Informaticae, 2020
γ-TRIS: a graph-algorithm for comprehensive identification of vector genomic insertion sites.
Bioinform., 2020
2019
The 2017 Network Tools and Applications in Biology (NETTAB) workshop: aims, topics and outcomes.
BMC Bioinform., 2019
isma: an R package for the integrative analysis of mutations detected by multiple pipelines.
BMC Bioinform., 2019
2018
A Scalable Genetic Programming Approach to Integrate miRNA-Target Predictions: Comparing Different Parallel Implementations of M3GP.
Complex., 2018
BMC Bioinform., 2018
2017
PeerJ Prepr., 2017
Int. J. High Perform. Comput. Appl., 2017
VISPA2: a scalable pipeline for high-throughput identification and annotation of vector integration sites.
BMC Bioinform., 2017
Bioinform., 2017
Proceedings of the 25th Euromicro International Conference on Parallel, 2017
2016
Concurr. Comput. Pract. Exp., 2016
Stochastic neutral modelling of the Gut Microbiota's relative species abundance from next generation sequencing data.
BMC Bioinform., 2016
BMC Bioinform., 2016
A novel molecular dynamics approach to evaluate the effect of phosphorylation on multimeric protein interface: the αB-Crystallin case study.
BMC Bioinform., 2016
BMC Bioinform., 2016
Briefings Bioinform., 2016
Proceedings of the 24th Euromicro International Conference on Parallel, 2016
Proceedings of the 24th Euromicro International Conference on Parallel, 2016
Proceedings of the 2nd International Workshop on Knowledge Discovery on the WEB, 2016
2015
Proceedings of the 23rd Euromicro International Conference on Parallel, 2015
NuchaRt: Embedding High-Level Parallel Computing in R for Augmented Hi-C Data Analysis.
Proceedings of the Computational Intelligence Methods for Bioinformatics and Biostatistics, 2015
2014
BMC Bioinform., 2014
BMC Bioinform., 2014
The WNoDeS Cloud Virtualization Framework: A Macromolecular Surface Analysis Application Case Study.
Proceedings of the 22nd Euromicro International Conference on Parallel, 2014
A CUDA Implementation of the Spatial TAU-Leaping in Crowded Compartments (STAUCC) Simulator.
Proceedings of the 22nd Euromicro International Conference on Parallel, 2014
Evaluating mixed HTC/cloud approaches for parameter sweep applications in systems biology.
Proceedings of the International Work-Conference on Bioinformatics and Biomedical Engineering, 2014
Proceedings of the Computational Intelligence Methods for Bioinformatics and Biostatistics, 2014
2013
Sensitivity Analysis for Studying the Relation between biochemical reactions and metabolic phenotypes.
J. Bioinform. Comput. Biol., 2013
SNPranker 2.0: a gene-centric data mining tool for diseases associated SNP prioritization in GWAS.
BMC Bioinform., 2013
A Parallel Implementation of the Stau-DPP Stochastic Simulator for the Modelling of Biological Systems.
Proceedings of the 21st Euromicro International Conference on Parallel, 2013
Comparing Viral (HIV) and Bacterial (Staphylococcus aureus) Infection of the Bone Tissue.
Proceedings of the BIOINFORMATICS 2013 - Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms, Barcelona, Spain, 11, 2013
2012
Molecular Mechanism of Allosteric Communication in Hsp70 Revealed by Molecular Dynamics Simulations.
PLoS Comput. Biol., 2012
Computing, 2012
IBDsite: a Galaxy-interacting, integrative database for supporting inflammatory bowel disease high throughput data analysis.
BMC Bioinform., 2012
Adv. Bioinformatics, 2012
Proceedings of the 20th Euromicro International Conference on Parallel, 2012
2011
IEEE ACM Trans. Comput. Biol. Bioinform., 2011
Int. J. Metadata Semant. Ontologies, 2011
Concurr. Comput. Pract. Exp., 2011
Briefings Bioinform., 2011
Proceedings of the 19th International Euromicro Conference on Parallel, 2011
Proceedings of the Parallel Computing Technologies - 11th International Conference, 2011
Solving Biclustering with a GRASP-Like Metaheuristic: Two Case-Studies on Gene Expression Analysis.
Proceedings of the Computational Intelligence Methods for Bioinformatics and Biostatistics, 2011
A Mathematical Model for the Enhanced Cytoplasmic Transport - How to Get (Faster) to the Nucleus.
Proceedings of the BIOINFORMATICS 2011, 2011
Proceedings of the Mathematical Approaches to Polymer Sequence Analysis and Related Problems, 2011
Proceedings of the Mathematical Approaches to Polymer Sequence Analysis and Related Problems, 2011
2010
RSSsite: a reference database and prediction tool for the identification of cryptic Recombination Signal Sequences in human and murine genomes.
Nucleic Acids Res., 2010
J. Integr. Bioinform., 2010
Overlapping Genes May Control Reprogramming of Mouse Somatic Cells into Induced Pluripotent Stem Cells (iPSCs) and Breast Cancer Stem Cells.
Silico Biol., 2010
BMC Syst. Biol., 2010
Semi-automatic identification of punching areas for tissue microarray building: the tubular breast cancer pilot study.
BMC Bioinform., 2010
Proceedings of the Search Computing, 2010
A Dynamic Parallel Approach to Recognize Tubular Breast Cancer for TMA Image Building.
Proceedings of the 18th Euromicro Conference on Parallel, 2010
Proceedings of the 18th Euromicro Conference on Parallel, 2010
Proceedings of the Membrane Computing, 2010
2009
Identification of functionally related genes using data mining and data integration: a breast cancer case study.
BMC Bioinform., 2009
The Human EST Ontology Explorer: a tissue-oriented visualization system for ontologies distribution in human EST collections.
BMC Bioinform., 2009
In silico saturation mutagenesis and docking screening for the analysis of protein-ligand interaction: the Endothelial Protein C Receptor case study.
BMC Bioinform., 2009
BMC Bioinform., 2009
Towards a systems biology approach to mammalian cell cycle: modeling the entrance into S phase of quiescent fibroblasts after serum stimulation.
BMC Bioinform., 2009
Parallel Decomposition of 3D Surfaces in Images of Local Descriptors for Molecular Screening.
Proceedings of the 17th Euromicro International Conference on Parallel, 2009
Proceedings of the Metadata and Semantic Research - Third International Conference, 2009
A Novel Variant of P Systems for the Modelling and Simulation of Biochemical Systems.
Proceedings of the Membrane Computing, 10th International Workshop, 2009
Sys-Bio Gateway: a Framework of Bioinformatics Database Resources Oriented to Systems Biology.
Proceedings of the International Workshop on Portals for Life Sciences, 2009
On the Performance of Large Scale Bayesian Phylogenetic Analyses with Grid Portals and Robot Certificates.
Proceedings of the International Workshop on Portals for Life Sciences, 2009
2008
Nucleic Acids Res., 2008
J. Integr. Bioinform., 2008
Int. J. Bioinform. Res. Appl., 2008
BMC Bioinform., 2008
BMC Bioinform., 2008
BMC Bioinform., 2008
Reconstructing networks of pathways via significance analysis of their intersections.
BMC Bioinform., 2008
Proceedings of the 16th Euromicro International Conference on Parallel, 2008
Proceedings of the Second International Conference on Complex, 2008
Proceedings of the Computational Intelligence Methods for Bioinformatics and Biostatistics, 2008
Proceedings of the 8th IEEE International Symposium on Cluster Computing and the Grid (CCGrid 2008), 2008
Proceedings of the Bioinformatics Research and Development, 2008
Proceedings of the 2008 IEEE International Conference on Bioinformatics and Biomedicine, 2008
2007
IEEE Trans. Inf. Technol. Biomed., 2007
Nucleic Acids Res., 2007
Int. J. Bifurc. Chaos, 2007
A data integration approach for cell cycle analysis oriented to model simulation in systems biology.
BMC Syst. Biol., 2007
BMC Bioinform., 2007
SYMBIOmatics: Synergies in Medical Informatics and Bioinformatics - exploring current scientific literature for emerging topics.
BMC Bioinform., 2007
BMC Bioinform., 2007
Briefings Bioinform., 2007
Experimenting Grid Protocols to Improve Privacy Preservation in Efficient Distributed Image Processing.
Proceedings of the Parallel Computing: Architectures, 2007
A Parallel Workflow for the Reconstruction of Molecular Surfaces.
Proceedings of the Parallel Computing: Architectures, 2007
Proceedings of the From Genes to Personalized HealthCare: Grid Solutions for the Life Sciences, 2007
BGBlast: A BLAST Grid Implementation with Database Self-Updating and Adaptive Replication.
Proceedings of the From Genes to Personalized HealthCare: Grid Solutions for the Life Sciences, 2007
Proceedings of the From Genes to Personalized HealthCare: Grid Solutions for the Life Sciences, 2007
Parameter Estimation for Cell Cycle Ordinary Differential Equation (ODE) Models using a Grid Approach.
Proceedings of the From Genes to Personalized HealthCare: Grid Solutions for the Life Sciences, 2007
2006
J. Parallel Distributed Comput., 2006
J. Integr. Bioinform., 2006
An Agent System for Automatic Workflows Composition in Grid Environments.
Int. Trans. Syst. Sci. Appl., 2006
Proceedings of the Challenges and Opportunities of HealthGrids, 2006
2005
Trans. Comp. Sys. Biology, 2005
Systematic analysis of human kinase genes: a large number of genes and alternative splicing events result in functional and structural diversity.
BMC Bioinform., 2005
High performance workflow implementation for protein surface characterization using grid technology.
BMC Bioinform., 2005
Overview of BITS2005, the Second Annual Meeting of the Italian Bioinformatics Society.
BMC Bioinform., 2005
BMC Bioinform., 2005
BMC Bioinform., 2005
Proceedings of the Biocomputing 2005, 2005
Proceedings of the 1st International Conference on Distributed Frameworks for Multimedia Applications (DFMA 2005), 2005
2003
2002
ASPD (Artificially Selected Proteins/Peptides Database): a database of proteins and peptides evolved in vitro.
Nucleic Acids Res., 2002
2001
Presence of ATG triplets in 5' untranslated regions of eukaryotic cDNAs correlates with a 'weak' context of the start codon.
Bioinform., 2001
2000
Prediction and Phylogenetic Analysis of Mammalian Short Interspersed Elements (SINEs).
Briefings Bioinform., 2000
1999
Bioinform., 1999
1998
GenExpress: A Computer System for Description, Analysis and Recognition of Regulatory Sequences in Eukaryotic Genome.
Proceedings of the 6th International Conference on Intelligent Systems for Molecular Biology (ISMB-98), Montréal, Québec, Canada, June 28, 1998
Proceedings of the Mathematical Support for Molecular Biology, 1998
1996
Comput. Appl. Biosci., 1996
Hamming-Clustering method for signals prediction in 5' and 3' regions of eukaryotic genes.
Comput. Appl. Biosci., 1996
Computer Analysis and Recognition of the Transcription Regulatory Elements in Eukaryotic Genomes.
Proceedings of the German Conference on Bioinformatics, 1996
1995
Comput. Appl. Biosci., 1995
Proceedings of the Third International Conference on Intelligent Systems for Molecular Biology, 1995
1994
Comput. Appl. Biosci., 1994
1993
SITEVIDEO: a computer system for functional site analysis and recognition. Investigation of the human splice sites.
Comput. Appl. Biosci., 1993
1992
Fast, statistically based alignment of amino acid sequences on the base of diagonal fragments of DOT-matrices.
Comput. Appl. Biosci., 1992