Lonneke Scheffer

According to our database, Lonneke Scheffer authored at least 7 papers between 2021 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

Machine learning and computational analyses of adaptive immune receptors.

Lonneke Scheffer

PhD thesis, 2024

Predictability of antigen binding based on short motifs in the antibody CDRH3.

Lonneke Scheffer, Eric Emanuel Reber, Brij Bhushan Mehta, Milena Pavlovic, Maria Chernigovskaya, Eve Richardson, Rahmad Akbar, Fridtjof Lund-Johansen, Victor Greiff, Ingrid Hobæk Haff, Geir Kjetil Sandve

Briefings Bioinform., 2024

2022

Unconstrained generation of synthetic antibody-antigen structures to guide machine learning methodology for antibody specificity prediction.

Philippe A. Robert, Rahmad Akbar, Robert Frank, Milena Pavlovic, Michael Widrich, Igor Snapkov, Andrei Slabodkin, Maria Chernigovskaya, Lonneke Scheffer, Eva Smorodina, Puneet Rawat, Brij Bhushan Mehta, Mai Ha Vu, Ingvild Frøberg Mathisen, Aurél Prósz, Krzysztof Abram, Alex Olar, Enkelejda Miho, Dag Trygve Truslew Haug, Fridtjof Lund-Johansen, Sepp Hochreiter, Ingrid Hobæk Haff, Günter Klambauer, Geir Kjetil Sandve, Victor Greiff

Nat. Comput. Sci., 2022

CompAIRR: ultra-fast comparison of adaptive immune receptor repertoires by exact and approximate sequence matching.

Torbjørn Rognes, Lonneke Scheffer, Victor Greiff, Geir Kjetil Sandve

Bioinform., 2022

TCRpower: quantifying the detection power of T-cell receptor sequencing with a novel computational pipeline calibrated by spike-in sequences.

Shiva Dahal-Koirala, Gabriel Balaban, Ralf Stefan Neumann, Lonneke Scheffer, Knut Erik Aslaksen Lundin, Victor Greiff, Ludvig Magne Sollid, Shuo-Wang Qiao, Geir Kjetil Sandve

Briefings Bioinform., 2022

2021

Ten simple rules for quick and dirty scientific programming.

Gabriel Balaban, Ivar Grytten, Knut Dagestad Rand, Lonneke Scheffer, Geir Kjetil Sandve

PLoS Comput. Biol., 2021

The immuneML ecosystem for machine learning analysis of adaptive immune receptor repertoires.

Milena Pavlovic, Lonneke Scheffer, Keshav Motwani, Chakravarthi Kanduri, Radmila Kompova, Nikolay Vazov, Knut Waagan, Fabian L. M. Bernal, Alexandre Almeida Costa, Brian Corrie, Rahmad Akbar, Ghadi S. Al Hajj, Gabriel Balaban, Todd M. Brusko, Maria Chernigovskaya, Scott Christley, Lindsay G. Cowell, Robert Frank, Ivar Grytten, Sveinung Gundersen, Ingrid Hobæk Haff, Eivind Hovig, Ping-Han Hsieh, Günter Klambauer, Marieke L. Kuijjer, Christin Lund-Andersen, Antonio Martini, Thomas Minotto, Johan Pensar, Knut D. Rand, Enrico Riccardi, Philippe A. Robert, Artur Rocha, Andrei Slabodkin, Igor Snapkov, Ludvig Magne Sollid, Dmytro Titov, Cédric R. Weber, Michael Widrich, Gur Yaari, Victor Greiff, Geir Kjetil Sandve

Nat. Mach. Intell., 2021