Liqing Zhang

According to our database, Liqing Zhang authored at least 36 papers between 2007 and 2024.

Collaborative distances:

• Dijkstra number of three.
• Erdős number of four.

2024

Mastering Long-Tail Complexity on Graphs: Characterization, Learning, and Generalization.

Haohui Wang, Baoyu Jing, Kaize Ding, Yada Zhu, Wei Cheng, Si Zhang, Yonghui Fan, Liqing Zhang, Dawei Zhou

Proceedings of the 30th ACM SIGKDD Conference on Knowledge Discovery and Data Mining, 2024

2023

DeepMicroGen: a generative adversarial network-based method for longitudinal microbiome data imputation.

Joung Min Choi, Ming Ji, Layne T. Watson, Liqing Zhang

Bioinform., May, 2023

FastViromeExplorer-Novel: Recovering Draft Genomes of Novel Viruses and Phages in Metagenomic Data.

Saima Sultana Tithi, Frank O. Aylward, Roderick V. Jensen, Liqing Zhang

J. Comput. Biol., April, 2023

2022

Towards Automatic Curation of Antibiotic Resistance Genes via Statement Extraction from Scientific Papers: A Benchmark Dataset and Models.

Sidhant Chandak, Liqing Zhang, Connor L. Brown, Lifu Huang

Proceedings of the 21st Workshop on Biomedical Language Processing, 2022

Protein-Protein Interaction Network Analysis Reveals Distinct Patterns of Antibiotic Resistance Genes.

Nazifa Ahmed Moumi, Connor L. Brown, Peter J. Vikesland, Amy Pruden, Liqing Zhang

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022

LM-ARG: Identification & classification of antibiotic resistance genes leveraging pre-trained protein language models.

Shafayat Ahmed, Muhit Islam Emon, Nazifa Ahmed Moumi, Liqing Zhang

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022

2021

MetaMLP: A Fast Word Embedding Based Classifier to Profile Target Gene Databases in Metagenomic Samples.

Gustavo A. Arango-Argoty, Lenwood S. Heath, Amy Pruden, Peter J. Vikesland, Liqing Zhang

J. Comput. Biol., 2021

AgroSeek: a system for computational analysis of environmental metagenomic data and associated metadata.

Xiao Liang, Kyle Akers, Ishi Keenum, Lauren Wind, Suraj Gupta, Chaoqi Chen, Reem Aldaihani, Amy Pruden, Liqing Zhang, Katharine F. Knowlton, Kang Xia, Lenwood S. Heath

BMC Bioinform., 2021

Towards a Serverless Bioinformatics Cyberinfrastructure Pipeline.

Shunyu David Yao, Muhammad Ali Gulzar, Liqing Zhang, Ali Raza Butt

Proceedings of the HiPS@HPDC 2021: Proceedings of the 1st Workshop on High Performance Serverless Computing, 2021

2020

ARGminer: a web platform for the crowdsourcing-based curation of antibiotic resistance genes.

Gustavo A. Arango-Argoty, G. K. P. Guron, Emily Garner, M. V. Riquelme, Lenwood S. Heath, Amy Pruden, Peter J. Vikesland, Liqing Zhang

Bioinform., 2020

A Fast Word Embedding Based Classifier to Profile Target Gene Databases in Metagenomic Samples.

Gustavo A. Arango-Argoty, Lenwood S. Heath, Amy Pruden, Peter J. Vikesland, Liqing Zhang

Proceedings of the Computational Advances in Bio and Medical Sciences, 2020

2018

Combining weighted adaptive CS-LBP and local linear discriminant projection for gait recognition.

Shanwen Zhang, Liqing Zhang

Multim. Tools Appl., 2018

2017

Leaf image based cucumber disease recognition using sparse representation classification.

Shanwen Zhang, Xiaowei Wu, Zhuhong You, Liqing Zhang

Comput. Electron. Agric., 2017

InfoTrim: A DNA read quality trimmer using entropy.

Jacob Porter, Liqing Zhang

Proceedings of the 7th IEEE International Conference on Computational Advances in Bio and Medical Sciences, 2017

Analysis of whole genome sequence and genome-wide SNPs in highly inbred pigs.

Jinlong Huo, Wenmin Chen, Xiaowei Wu, Kuan Yang, Weirong Pan, Liqing Zhang, Yangzhi Zeng

Proceedings of the 7th IEEE International Conference on Computational Advances in Bio and Medical Sciences, 2017

2016

UPS-indel: A better approach for finding indel redundancy.

Mohammad Shabbir Hasan, Xiaowei Wu, Layne T. Watson, Zhiyi Li, Liqing Zhang

Proceedings of the 6th IEEE International Conference on Computational Advances in Bio and Medical Sciences, 2016

Poster: Diagnosing and treating code-duplication problems in bioinformatics libraries.

Mohammad Shabbir Hasan, Saima Sultana Tithi, Eli Tilevich, Liqing Zhang

Proceedings of the 6th IEEE International Conference on Computational Advances in Bio and Medical Sciences, 2016

2015

HMMvar-func: a new method for predicting the functional outcome of genetic variants.

Mingming Liu, Layne T. Watson, Liqing Zhang

BMC Bioinform., 2015

PseKNC-General: a cross-platform package for generating various modes of pseudo nucleotide compositions.

Wei Chen, Xitong Zhang, Jordan Brooker, Hao Lin, Liqing Zhang, Kuo-Chen Chou

Bioinform., 2015

2014

Quantitative prediction of the effect of genetic variation using hidden Markov models.

Mingming Liu, Layne T. Watson, Liqing Zhang

BMC Bioinform., 2014

Vindel: a simple pipeline for checking indel redundancy.

Zhiyi Li, Xiaowei Wu, Bin He, Liqing Zhang

BMC Bioinform., 2014

Objective and Comprehensive Evaluation of Bisulfite Short Read Mapping Tools.

Hong Tran, Jacob Porter, Ming-an Sun, Hehuang Xie, Liqing Zhang

Adv. Bioinformatics, 2014

Classification of Mutations by Functional Impact Type: Gain of Function, Loss of Function, and Switch of Function.

Mingming Liu, Layne T. Watson, Liqing Zhang

Proceedings of the Bioinformatics Research and Applications - 10th International Symposium, 2014

Improving bisulfite short-read mapping efficiency with hairpin-bisulfite data.

Jacob Porter, Ming-an Sun, Hehuang Xie, Liqing Zhang

Proceedings of the IEEE 4th International Conference on Computational Advances in Bio and Medical Sciences, 2014

2013

Status of Research on Insertion and Deletion Variations in the Human Population.

Liqing Zhang, Mingming Liu, Layne T. Watson

Proceedings of the Models and Algorithms for Genome Evolution, 2013

2011

A Network of SCOP Hidden Markov Models and Its Analysis.

Liqing Zhang, Layne T. Watson, Lenwood S. Heath

BMC Bioinform., 2011

A new functional association-based protein complex prediction.

Mingming Liu, Yanwei Huang, Liqing Zhang, David R. Bevan

Proceedings of the 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops, 2011

2010

MSOAR 2.0: Incorporating tandem duplications into ortholog assignment based on genome rearrangement.

Guanqun Shi, Liqing Zhang, Tao Jiang

BMC Bioinform., 2010

The Expected Fitness Cost of a Mutation Fixation under the One-Dimensional Fisher Model.

Liqing Zhang, Layne T. Watson

Proceedings of the Bioinformatics Research and Applications, 6th International Symposium, 2010

GPU-RMAP: Accelerating Short-Read Mapping on Graphics Processors.

Ashwin M. Aji, Liqing Zhang, Wu-chun Feng

Proceedings of the 13th IEEE International Conference on Computational Science and Engineering, 2010

2009

Identifying disease associations via genome-wide association studies.

Wenhui Huang, Pengyuan Wang, Zhen Liu, Liqing Zhang

BMC Bioinform., 2009

2008

A Holistic View of Evolutionary Rates in Paralogous and Orthologous Genes.

Deng Pan, Liqing Zhang

Proceedings of the Advanced Intelligent Computing Theories and Applications. With Aspects of Artificial Intelligence, 2008

Using Cost-Sensitive Learning to Determine Gene Conversions.

Mark J. Lawson, Lenwood S. Heath, Naren Ramakrishnan, Liqing Zhang

Proceedings of the Advanced Intelligent Computing Theories and Applications. With Aspects of Artificial Intelligence, 2008

A Framework to Understand the Mechanism of Toxicity.

Wenhui Huang, Liqing Zhang

Proceedings of the Advanced Intelligent Computing Theories and Applications. With Aspects of Artificial Intelligence, 2008

2007

Note on the Computation of Critical Effective Population Sizes.

Liqing Zhang, Layne T. Watson

J. Comput. Biol., 2007

The Identification of Antisense Gene Pairs Through Available Software.

Mark J. Lawson, Liqing Zhang

Proceedings of the Bioinformatics Research and Applications, Third International Symposium, 2007