Ling-Yun Wu

Orcid: 0000-0001-9487-0215

According to our database¹, Ling-Yun Wu authored at least 38 papers between 2003 and 2023.

Collaborative distances:

Dijkstra number² of five.
Erdős number³ of four.

Timeline

Legend:

Book

In proceedings

Article

PhD thesis

Dataset

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Links

On csauthors.net:

Bibliography

2023

PathExpSurv: pathway expansion for explainable survival analysis and disease gene discovery.

[BibT_eX]

[DOI]

BMC Bioinform., December, 2023

Author Correction: Supervised learning of high-confidence phenotypic subpopulations from single-cell data.

[BibT_eX]

[DOI]

Nat. Mac. Intell., June, 2023

Supervised learning of high-confidence phenotypic subpopulations from single-cell data.

[BibT_eX]

[DOI]

Nat. Mac. Intell., May, 2023

2022

Importance-Penalized Joint Graphical Lasso (IPJGL): differential network inference via GGMs.

[BibT_eX]

[DOI]

Jiacheng Leng

Ling-Yun Wu

Bioinform., 2022

hDirect-MAP: projection-free single-cell modeling of response to checkpoint immunotherapy.

[BibT_eX]

[DOI]

Briefings Bioinform., 2022

Interaction-based transcriptome analysis via differential network inference.

[BibT_eX]

[DOI]

Jiacheng Leng

Ling-Yun Wu

Briefings Bioinform., 2022

2021

Understanding the network formation pattern for better link prediction.

[BibT_eX]

[DOI]

Jiating Yu

Ling-Yun Wu

CoRR, 2021

Network Refinement: A unified framework for enhancing signal or removing noise of networks.

[BibT_eX]

[DOI]

Jiating Yu

Jiacheng Leng

Ling-Yun Wu

CoRR, 2021

An Optimization Method for Calibrating Wireline Conveyance Tension.

[BibT_eX]

[DOI]

Proceedings of the 4th International Conference on Complex Systems Design & Management Asia, 2021

2019

Discovering cooperative biomarkers for heterogeneous complex disease diagnoses.

[BibT_eX]

[DOI]

Briefings Bioinform., 2019

2017

NetGen: a novel network-based probabilistic generative model for gene set functional enrichment analysis.

[BibT_eX]

[DOI]

BMC Syst. Biol., 2017

Structure alignment-based classification of RNA-binding pockets reveals regional RNA recognition motifs on protein surfaces.

[BibT_eX]

[DOI]

BMC Bioinform., 2017

2015

Potts model based on a Markov process computation solves the community structure problem effectively.

[BibT_eX]

[DOI]

CoRR, 2015

2014

Discovery of co-occurring driver pathways in cancer.

[BibT_eX]

[DOI]

BMC Bioinform., 2014

2013

Structure and dynamics of core/periphery networks.

[BibT_eX]

[DOI]

J. Complex Networks, 2013

Corbi: a new R package for biological network alignment and querying.

[BibT_eX]

[DOI]

Qiang Huang

Ling-Yun Wu

Xiang-Sun Zhang

BMC Syst. Biol., 2013

2012

Revealing metabolite biomarkers for acupuncture treatment by linear programming based feature selection.

[BibT_eX]

[DOI]

BMC Syst. Biol., 2012

Efficient methods for identifying mutated driver pathways in cancer.

[BibT_eX]

[DOI]

Bioinform., 2012

CNetA: Network alignment by combining biological and topological features.

[BibT_eX]

[DOI]

Qiang Huang

Ling-Yun Wu

Xiang-Sun Zhang

Proceedings of the 6th IEEE International Conference on Systems Biology, 2012

2011

An efficient network querying method based on conditional random fields.

[BibT_eX]

[DOI]

Qiang Huang

Ling-Yun Wu

Xiang-Sun Zhang

Bioinform., 2011

2010

Semi-supervised drug-protein interaction prediction from heterogeneous biological spaces.

[BibT_eX]

[DOI]

BMC Syst. Biol., 2010

An information-flow-based model with dissipation, saturation and direction for active pathway inference.

[BibT_eX]

[DOI]

BMC Syst. Biol., 2010

Prediction of protein-RNA binding sites by a random forest method with combined features.

[BibT_eX]

[DOI]

Bioinform., 2010

2009

Evaluating Protein Similarity from Coarse Structures.

[BibT_eX]

[DOI]

IEEE ACM Trans. Comput. Biol. Bioinform., 2009

Self-organizing map approaches for the haplotype assembly problem.

[BibT_eX]

[DOI]

Math. Comput. Simul., 2009

Conditional random pattern algorithm for LOH inference and segmentation.

[BibT_eX]

[DOI]

Bioinform., 2009

2008

Protein cavity clustering based on community structure of pocket similarity network.

[BibT_eX]

[DOI]

Int. J. Bioinform. Res. Appl., 2008

A fast haplotype inference method for large population genotype data.

[BibT_eX]

[DOI]

Comput. Stat. Data Anal., 2008

2007

Supervised classification of protein structures based on convex hull representation.

[BibT_eX]

[DOI]

Int. J. Bioinform. Res. Appl., 2007

An optimization approach to the reconstruction of positional DNA sequencing by hybridization with errors.

[BibT_eX]

[DOI]

Eur. J. Oper. Res., 2007

Analysis on multi-domain cooperation for predicting protein-protein interactions.

[BibT_eX]

[DOI]

BMC Bioinform., 2007

Predicting gene ontology functions from protein's regional surface structures.

[BibT_eX]

[DOI]

BMC Bioinform., 2007

2006

Capacitated facility location problem with general setup cost.

[BibT_eX]

[DOI]

Ling-Yun Wu

Xiang-Sun Zhang

Ju-Liang Zhang

Comput. Oper. Res., 2006

Automatic Classification of Protein Structures Based on Convex Hull Representation by Integrated Neural Network.

[BibT_eX]

[DOI]

Proceedings of the Theory and Applications of Models of Computation, 2006

2005

Exploring Protein's Optimal Hp Configurations by Self-organizing Mapping.

[BibT_eX]

[DOI]

J. Bioinform. Comput. Biol., 2005

Haplotype assembly from aligned weighted SNP fragments.

[BibT_eX]

[DOI]

Comput. Biol. Chem., 2005

Haplotype reconstruction from SNP fragments by minimum error correction.

[BibT_eX]

[DOI]

Bioinform., 2005

2003

Reconstruction of DNA sequencing by hybridization.

[BibT_eX]

[DOI]

Ji-Hong Zhang

Ling-Yun Wu

Xiang-Sun Zhang

Bioinform., 2003

Ling-Yun Wu

Timeline

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On csauthors.net:

Bibliography

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