Lindsay G. Cowell

According to our database, Lindsay G. Cowell authored at least 23 papers between 2006 and 2022.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2022

Coordinating Coronavirus Research: The Virus Infectious Disease Ontology.

John Beverley, Yongqun He, Barry Smith, Shane Babcock, Eric Merrell, Lindsay G. Cowell, Regina Hurley, Sebastian Deusing

Proceedings of the International Conference on Biomedical Ontology 2022 (ICBO), Ann Arbor, Michigan, USA, September 25, 2022

2021

The immuneML ecosystem for machine learning analysis of adaptive immune receptor repertoires.

Milena Pavlovic, Lonneke Scheffer, Keshav Motwani, Chakravarthi Kanduri, Radmila Kompova, Nikolay Vazov, Knut Waagan, Fabian L. M. Bernal, Alexandre Almeida Costa, Brian Corrie, Rahmad Akbar, Ghadi S. Al Hajj, Gabriel Balaban, Todd M. Brusko, Maria Chernigovskaya, Scott Christley, Lindsay G. Cowell, Robert Frank, Ivar Grytten, Sveinung Gundersen, Ingrid Hobæk Haff, Eivind Hovig, Ping-Han Hsieh, Günter Klambauer, Marieke L. Kuijjer, Christin Lund-Andersen, Antonio Martini, Thomas Minotto, Johan Pensar, Knut D. Rand, Enrico Riccardi, Philippe A. Robert, Artur Rocha, Andrei Slabodkin, Igor Snapkov, Ludvig Magne Sollid, Dmytro Titov, Cédric R. Weber, Michael Widrich, Gur Yaari, Victor Greiff, Geir Kjetil Sandve

Nat. Mach. Intell., 2021

Dynamic Kernel Matching for Non-conforming Data: A Case Study of T-cell Receptor Datasets.

Jared Ostmeyer, Scott Christley, Lindsay G. Cowell

CoRR, 2021

The Infectious Disease Ontology in the age of COVID-19.

Shane Babcock, John Beverley, Lindsay G. Cowell, Barry Smith

J. Biomed. Semant., 2021

2020

The ADC API: A Web API for the Programmatic Query of the AIRR Data Commons.

Scott Christley, Ademar Aguiar, George Blanck, Felix Breden, Syed Ahmad Chan Bukhari, Christian E. Busse, Jerome Jaglale, Srilakshmy L. Harikrishnan, Uri Laserson, Bjoern Peters, Artur Rocha, Chaim A. Schramm, Sarah Taylor, Jason A. Vander Heiden, Bojan Zimonja, Corey T. Watson, Brian Corrie, Lindsay G. Cowell

Frontiers Big Data, 2020

2019

Machine learning on sequential data using a recurrent weighted average.

Jared Ostmeyer, Lindsay G. Cowell

Neurocomputing, 2019

2017

Statistical classifiers for diagnosing disease from immune repertoires: a case study using multiple sclerosis.

Jared Ostmeyer, Scott Christley, William Rounds, Inimary T. Toby, Benjamin M. Greenberg, Nancy Monson, Lindsay G. Cowell

BMC Bioinform., 2017

VDJPipe: a pipelined tool for pre-processing immune repertoire sequencing data.

Scott Christley, Mikhail K. Levin, Inimary T. Toby, John M. Fonner, Nancy Monson, William Rounds, Florian Rubelt, Walter Scarborough, Richard H. Scheuermann, Lindsay G. Cowell

BMC Bioinform., 2017

Cell type discovery and representation in the era of high-content single cell phenotyping.

Trygve E. Bakken, Lindsay G. Cowell, Brian D. Aevermann, Mark Novotny, Rebecca D. Hodge, Jeremy A. Miller, Alexandra Lee, Ivan Chang, Jamison M. McCorrison, Bali Pulendran, Yu Qian, Nicholas J. Schork, Roger S. Lasken, Ed S. Lein, Richard H. Scheuermann

BMC Bioinform., 2017

2016

VDJML: a file format with tools for capturing the results of inferring immune receptor rearrangements.

Inimary T. Toby, Mikhail K. Levin, Edward Salinas, Scott Christley, Sanchita Bhattacharya, Felix Breden, Adam Buntzman, Brian Corrie, John M. Fonner, Namita T. Gupta, Uri Hershberg, Nishanth Marthandan, Aaron M. Rosenfeld, William Rounds, Florian Rubelt, Walter Scarborough, Jamie K. Scott, Mohamed Uduman, Jason A. Vander Heiden, Richard H. Scheuermann, Nancy Monson, Steven H. Kleinstein, Lindsay G. Cowell

BMC Bioinform., 2016

2015

owlcpp: a C++ library for working with OWL ontologies.

Mikhail K. Levin, Lindsay G. Cowell

J. Biomed. Semant., 2015

2014

Ontological Representation of CDC Active Bacterial Core Surveillance Case Reports.

Albert Goldfain, Barry Smith, Lindsay G. Cowell

Proceedings of the 5th International Conference on Biomedical Ontology, 2014

2013

Design and Evaluation of a Bacterial Clinical Infectious Diseases Ontology.

Claire L. Gordon, Stephanie Pouch, Lindsay G. Cowell, Mary Regina Boland, Heather L. Platt, Albert Goldfain, Chunhua Weng

Proceedings of the AMIA 2013, 2013

2012

Constructing a Lattice of Infectious Disease Ontologies from a Staphylococcus aureus Isolate Repository.

Albert Goldfain, Lindsay G. Cowell, Barry Smith

Proceedings of the 3rd International Conference on Biomedical Ontology (ICBO 2012), 2012

2011

Towards an ontological representation of resistance: The case of MRSA.

Albert Goldfain, Barry Smith, Lindsay G. Cowell

J. Biomed. Informatics, 2011

Hematopoietic cell types: Prototype for a revised cell ontology.

Alexander D. Diehl, Alison Deckhut Augustine, Judith A. Blake, Lindsay G. Cowell, Elizabeth S. Gold, Timothy A. Gondré-Lewis, Anna Maria Masci, Terrence F. Meehan, Penelope A. Morel, Anastasia Nijnik, Bjoern Peters, Bali Pulendran, Richard H. Scheuermann, Q. Alison Yao, Martin S. Zand, Christopher J. Mungall

J. Biomed. Informatics, 2011

Logical Development of the Cell Ontology.

Terrence F. Meehan, Anna Maria Masci, Amina Abdulla, Lindsay G. Cowell, Judith A. Blake, Christopher J. Mungall, Alexander D. Diehl

BMC Bioinform., 2011

Bridging Multiple Ontologies: Representation of the Liver Immune Response.

Anna Maria Masci, Jeffrey Roach, Bernard de Bono, Pierre Grenon, Lindsay G. Cowell

Proceedings of the 2nd International Conference on Biomedical Ontology, 2011

Connecting Ontologies for the Representation of Biological Pathways.

Anna Maria Masci, Mikhail K. Levin, Alan Ruttenberg, Lindsay G. Cowell

Proceedings of the 2nd International Conference on Biomedical Ontology, 2011

<i>owl_cpp</i>, a C++ Library for Working with OWL Ontologies.

Mikhail K. Levin, Alan Ruttenberg, Anna Maria Masci, Lindsay G. Cowell

Proceedings of the 2nd International Conference on Biomedical Ontology, 2011

2010

Dispositions and the Infectious Disease Ontology.

Albert Goldfain, Barry Smith, Lindsay G. Cowell

Proceedings of the Formal Ontology in Information Systems, 2010

2009

An improved ontological representation of dendritic cells as a paradigm for all cell types.

Anna Maria Masci, Cecilia N. Arighi, Alexander D. Diehl, Anne E. Lieberman, Chris Mungall, Richard H. Scheuermann, Barry Smith, Lindsay G. Cowell

BMC Bioinform., 2009

2006

SoDA: implementation of a 3D alignment algorithm for inference of antigen receptor recombinations.

Joseph M. Volpe, Lindsay G. Cowell, Thomas B. Kepler

Bioinform., 2006