Licong Cui

According to our database, Licong Cui authored at least 84 papers between 2008 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2024

Mapping of Alzheimer's disease related data elements and the NIH Common Data Elements.

Xubing Hao, Rashmie Abeysinghe, Fengbo Zheng, Paul E. Schulz, Licong Cui

BMC Medical Informatics Decis. Mak., December, 2024

Leveraging logical definitions and lexical features to detect missing IS-A relations in biomedical terminologies.

Rashmie Abeysinghe, Fengbo Zheng, Jay Shi, Samden D. Lhatoo, Licong Cui

J. Biomed. Semant., December, 2024

Exploring Pre-trained Language Models for Vocabulary Alignment in the UMLS.

Xubing Hao, Rashmie Abeysinghe, Jay Shi, Licong Cui

Proceedings of the Artificial Intelligence in Medicine - 22nd International Conference, 2024

2023

An ontology-based approach for harmonization and cross-cohort query of Alzheimer's disease data resources.

Xubing Hao, Xiaojin Li, Guo-Qiang Zhang, Cui Tao, Paul E. Schulz, Licong Cui

BMC Medical Informatics Decis. Mak., December, 2023

Logical definition-based identification of potential missing concepts in SNOMED CT.

Xubing Hao, Rashmie Abeysinghe, Kirk Roberts, Licong Cui

BMC Medical Informatics Decis. Mak., December, 2023

Special supplement issue on quality assurance and enrichment of biological and biomedical ontologies and terminologies.

Licong Cui, Ankur Agrawal

BMC Medical Informatics Decis. Mak., December, 2023

A deep learning approach to identify missing <i>is-a</i> relations in SNOMED CT.

Rashmie Abeysinghe, Fengbo Zheng, Elmer V. Bernstam, Jay Shi, Olivier Bodenreider, Licong Cui

J. Am. Medical Informatics Assoc., February, 2023

Application of an ontology for model cards to generate computable artifacts for linking machine learning information from biomedical research.

Muhammad Amith, Licong Cui, Kirk Roberts, Cui Tao

Proceedings of the Companion Proceedings of the ACM Web Conference 2023, 2023

2022

A hybrid unsupervised and supervised learning approach for postictal generalized EEG suppression detection.

Xiaojin Li, Yan Huang, Samden D. Lhatoo, Shiqiang Tao, Laura Vilella Bertran, Guo-Qiang Zhang, Licong Cui

Frontiers Neuroinformatics, August, 2022

Towards quality improvement of vaccine concept mappings in the OMOP vocabulary with a semi-automated method.

Rashmie Abeysinghe, Adam Black, Denys Kaduk, Yupeng Li, Christian Reich, Alexander Davydov, Lixia Yao, Licong Cui

J. Biomed. Informatics, 2022

A multimodal clinical data resource for personalized risk assessment of sudden unexpected death in epilepsy.

Xiaojin Li, Shiqiang Tao, Samden D. Lhatoo, Licong Cui, Yan Huang, Johnson P. Hampson, Guo-Qiang Zhang

Frontiers Big Data, 2022

Toward a standard formal semantic representation of the model card report.

Muhammad Tuan Amith, Licong Cui, Degui Zhi, Kirk Roberts, Xiaoqian Jiang, Fang Li, Evan Yu, Cui Tao

BMC Bioinform., 2022

Identification of missing hierarchical relations in the vaccine ontology using acquired term pairs.

Warren Manuel, Rashmie Abeysinghe, Yongqun He, Cui Tao, Licong Cui

J. Biomed. Semant., 2022

An evidence-based lexical pattern approach for quality assurance of Gene Ontology relations.

Rashmie Abeysinghe, Yuntao Yang, Mason Bartels, W. Jim Zheng, Licong Cui

Briefings Bioinform., 2022

Identifying Missing IS-A Relations in Orphanet Rare Disease Ontology.

Maryamsadat Mohtashamian, Rashmie Abeysinghe, Xubing Hao, Licong Cui

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022

A substring replacement approach for identifying missing IS-A relations in SNOMED CT.

Xubing Hao, Rashmie Abeysinghe, Jay Shi, Licong Cui

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022

Automated Identification of Missing IS-A Relations in the Human Phenotype Ontology.

Maryamsadat Mohtashamian, Ran Hu, Rashmie Abeysinghe, Xubing Hao, Hua Xu, Licong Cui

Proceedings of the AMIA 2022, 2022

Temporal Cohort Logic.

Guo-Qiang Zhang, Xiaojin Li, Yan Huang, Licong Cui

Proceedings of the AMIA 2022, 2022

2021

Identification of missing concepts in biomedical terminologies using sequence-based formal concept analysis.

Fengbo Zheng, Rashmie Abeysinghe, Licong Cui

BMC Medical Informatics Decis. Mak., 2021

Leveraging non-lattice subgraphs for suggestion of new concepts for SNOMED CT.

Xubing Hao, Rashmie Abeysinghe, Fengbo Zheng, Licong Cui

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021

Identifying Sleep-Related Factors Associated with Cognitive Function in a Hispanics/Latinos Cohort: A Dual Random Forest Approach.

Xiaojin Li, Licong Cui, Fei Wang, Paul E. Schulz, Guo-Qiang Zhang

Proceedings of the AMIA 2021, American Medical Informatics Association Annual Symposium, San Diego, CA, USA, October 30, 2021, 2021

A Comparison of Exhaustive and Non-lattice-based Methods for Auditing Hierarchical Relations in Gene Ontology.

Rashmie Abeysinghe, Fengbo Zheng, Licong Cui

Proceedings of the AMIA 2021, American Medical Informatics Association Annual Symposium, San Diego, CA, USA, October 30, 2021, 2021

2020

Ontologies as nested facet systems for human-data interaction.

Guoqiang Zhang, Shiqiang Tao, Ningzhou Zeng, Licong Cui

Semantic Web, 2020

Detecting missing IS-A relations in the NCI Thesaurus using an enhanced hybrid approach.

Fengbo Zheng, Rashmie Abeysinghe, Nicholas Sioutos, Lori Whiteman, Lyubov Remennik, Licong Cui

BMC Medical Informatics Decis. Mak., 2020

Learning to detect the onset of slow activity after a generalized tonic-clonic seizure.

Carroll Vance, Yejin Kim, Guo-Qiang Zhang, Samden D. Lhatoo, Shiqiang Tao, Licong Cui, Xiaojin Li, Xiaoqian Jiang

BMC Medical Informatics Decis. Mak., 2020

Web-based interactive mapping from data dictionaries to ontologies, with an application to cancer registry.

Shiqiang Tao, Ningzhou Zeng, Isaac Hands, Joseph Hurt-Mueller, Eric B. Durbin, Licong Cui, Guo-Qiang Zhang

BMC Medical Informatics Decis. Mak., 2020

A community effort for automatic detection of postictal generalized EEG suppression in epilepsy.

Yejin Kim, Xiaoqian Jiang, Samden D. Lhatoo, Guoqiang Zhang, Shiqiang Tao, Licong Cui, Xiaojin Li, Robert D. Jolly, Luyao Chen, Michael Phan, Cung Ha, Marijane Detranaltes, Jiajie Zhang

BMC Medical Informatics Decis. Mak., 2020

Conversational ontology operator: patient-centric vaccine dialogue management engine for spoken conversational agents.

Muhammad Amith, Rebecca Lin, Licong Cui, Dennis Wang, Anna Zhu, Grace Xiong, Hua Xu, Kirk Roberts, Cui Tao

BMC Medical Informatics Decis. Mak., 2020

Quality assurance and enrichment of biological and biomedical ontologies and terminologies.

Ankur Agrawal, Licong Cui

BMC Medical Informatics Decis. Mak., 2020

A transformation-based method for auditing the IS-A hierarchy of biomedical terminologies in the Unified Medical Language System.

Fengbo Zheng, Jay Shi, Yuntao Yang, W. Jim Zheng, Licong Cui

J. Am. Medical Informatics Assoc., 2020

SSIF: Subsumption-based Sub-term Inference Framework to audit Gene Ontology.

Rashmie Abeysinghe, Eugene W. Hinderer, Hunter N. B. Moseley, Licong Cui

Bioinform., 2020

A Lexical-based Formal Concept Analysis Method to Identify Missing Concepts in the NCI Thesaurus.

Fengbo Zheng, Licong Cui

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2020

HRV-Spark: Computing Heart Rate Variability Measures Using Apache Spark.

Xufeng Qu, Yuanyuan Wu, Jinze Liu, Licong Cui

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2020

A lexical-based approach for exhaustive detection of missing hierarchical IS-A relations in SNOMED CT.

Fengbo Zheng, Jay Shi, Licong Cui

Proceedings of the AMIA 2020, 2020

2019

An Ontology-Powered Dialogue Engine For Patient Communication of Vaccines.

Muhammad Amith, Rebecca Lin, Licong Cui, Dennis Wang, Anna Zhu, Grace Xiong, Hua Xu, Kirk Roberts, Cui Tao

Proceedings of the 4th International Workshop on Semantics-Powered Data Mining and Analytics co-located with the 18th International Semantic Web Conference (ISWC 2019), 2019

Validating Auto-Suggested Changes for SNOMED CT in Non-Lattice Subgraphs Using Relational Machine Learning.

Qi Sun, Guo-Qiang Zhang, Wei Zhu, Licong Cui

Proceedings of the MEDINFO 2019: Health and Wellbeing e-Networks for All, 2019

Pattern-based Extraction of Disease Drug Combination Knowledge from Biomedical Literature.

Jing Liu, Rashmie Abeysinghe, Fengbo Zheng, Licong Cui

Proceedings of the 2019 IEEE International Conference on Healthcare Informatics, 2019

A Hybrid Method to Detect Missing Hierarchical Relations in NCI Thesaurus.

Fengbo Zheng, Rashmie Abeysinghe, Licong Cui

Proceedings of the 2019 IEEE International Conference on Bioinformatics and Biomedicine, 2019

Hadoop-EDF: Large-scale Distributed Processing of Electrophysiological Signal Data in Hadoop MapReduce.

Yuanyuan Wu, Xiaojin Li, Jinze Liu, Licong Cui

Proceedings of the 2019 IEEE International Conference on Bioinformatics and Biomedicine, 2019

Ontology of Consumer Health Vocabulary: providing a formal and interoperable semantic resource for linking lay language and medical terminology.

Muhammad Amith, Licong Cui, Kirk Roberts, Hua Xu, Cui Tao

Proceedings of the 2019 IEEE International Conference on Bioinformatics and Biomedicine, 2019

SeizureBank: A Repository of Analysis-ready Seizure Signal Data.

Xiaojin Li, Yan Huang, Shiqiang Tao, Licong Cui, Samden D. Lhatoo, Guo-Qiang Zhang

Proceedings of the AMIA 2019, 2019

Discriminative Sleep Patterns of Alzheimer's Disease via Tensor Factorization.

Yejin Kim, Xiaoqian Jiang, Luyao Chen, Xiaojin Li, Licong Cui

Proceedings of the AMIA 2019, 2019

Leveraging Non-lattice Subgraphs to Audit Hierarchical Relations in NCI Thesaurus.

Rashmie Abeysinghe, Michael A. Brooks, Licong Cui

Proceedings of the AMIA 2019, 2019

2018

HyCLASSS: A Hybrid Classifier for Automatic Sleep Stage Scoring.

Xiaojin Li, Licong Cui, Shiqiang Tao, Jing Chen, Xiang Zhang, Guo-Qiang Zhang

IEEE J. Biomed. Health Informatics, 2018

X-search: an open access interface for cross-cohort exploration of the National Sleep Research Resource.

Licong Cui, Ningzhou Zeng, Matthew Kim, Remo Mueller, Emily R. Hankosky, Susan Redline, Guo-Qiang Zhang

BMC Medical Informatics Decis. Mak., 2018

Query-constraint-based mining of association rules for exploratory analysis of clinical datasets in the National Sleep Research Resource.

Rashmie Abeysinghe, Licong Cui

BMC Medical Informatics Decis. Mak., 2018

Quality assurance of biomedical terminologies and ontologies.

James Geller, Yehoshua Perl, Licong Cui, Guo-Qiang Zhang

J. Biomed. Informatics, 2018

Auditing SNOMED CT hierarchical relations based on lexical features of concepts in non-lattice subgraphs.

Licong Cui, Olivier Bodenreider, Jay Shi, Guo-Qiang Zhang

J. Biomed. Informatics, 2018

An efficient, large-scale, non-lattice-detection algorithm for exhaustive structural auditing of biomedical ontologies.

Guo-Qiang Zhang, Guangming Xing, Licong Cui

J. Biomed. Informatics, 2018

The National Sleep Research Resource: towards a sleep data commons.

Guo-Qiang Zhang, Licong Cui, Remo Mueller, Shiqiang Tao, Matthew Kim, Michael Rueschman, Sara Mariani, Daniel R. Mobley, Susan Redline

J. Am. Medical Informatics Assoc., 2018

Exploring Deep Learning-based Approaches for Predicting Concept Names in SNOMED CT.

Fengbo Zheng, Licong Cui

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

A Lexical Approach to Identifying Subtype Inconsistencies in Biomedical Terminologies.

Rashmie Abeysinghe, Fengbo Zheng, Eugene W. Hinderer, Hunter N. B. Moseley, Licong Cui

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

A Cross-Cohort Query System for the National Sleep Research Resource (NSRR).

Licong Cui, Guo-Qiang Zhang

Proceedings of the AMIA 2018, 2018

Identifying Similar Non-Lattice Subgraphs in Gene Ontology based on Structural Isomorphism and Semantic Similarity of Concept Labels.

Rashmie Abeysinghe, Xufeng Qu, Licong Cui

Proceedings of the AMIA 2018, 2018

2017

Mining non-lattice subgraphs for detecting missing hierarchical relations and concepts in SNOMED CT.

Licong Cui, Wei Zhu, Shiqiang Tao, James T. Case, Olivier Bodenreider, Guo-Qiang Zhang

J. Am. Medical Informatics Assoc., 2017

A Data Capture Framework for Large-scale Interventional Studies with Survey Workflow Management.

Shiqiang Tao, Ningzhou Zeng, Xi Wu, Wei Zhu, Xiaojin Li, Licong Cui, Guo-Qiang Zhang

Proceedings of the Summit on Clinical Research Informatics, 2017

Evaluation of relational and NoSQL approaches for patient cohort identification from heterogeneous data sources.

Ningzhou Zeng, Guo-Qiang Zhang, Xiaojin Li, Licong Cui

Proceedings of the 2017 IEEE International Conference on Bioinformatics and Biomedicine, 2017

Auditing subtype inconsistencies among gene ontology concepts.

Rashmie Abeysinghe, Eugene W. Hinderer, Hunter N. B. Moseley, Licong Cui

Proceedings of the 2017 IEEE International Conference on Bioinformatics and Biomedicine, 2017

Query-constraint-based association rule mining from diverse clinical datasets in the national sleep research resource.

Rashmie Abeysinghe, Licong Cui

Proceedings of the 2017 IEEE International Conference on Bioinformatics and Biomedicine, 2017

Spark-MCA: Large-scale, Exhaustive Formal Concept Analysis for Evaluating the Semantic Completeness of SNOMED CT.

Wei Zhu, Guo-Qiang Zhang, Licong Cui

Proceedings of the AMIA 2017, 2017

Facilitating Cohort Discovery by Enhancing Ontology Exploration, Query Management and Query Sharing for Large Clinical Data Repositories.

Shiqiang Tao, Licong Cui, Xi Wu, Guo-Qiang Zhang

Proceedings of the AMIA 2017, 2017

SpindleSphere: A Web-based Platform for Large-scale Sleep Spindle Analysis and Visualization.

Xiaojin Li, Licong Cui, Shiqiang Tao, Ningzhou Zeng, Guo-Qiang Zhang

Proceedings of the AMIA 2017, 2017

Quality Assurance of NCI Thesaurus by Mining Structural-Lexical Patterns.

Rashmie Abeysinghe, Michael A. Brooks, Jeffery C. Talbert, Licong Cui

Proceedings of the AMIA 2017, 2017

Can SNOMED CT Changes Be Used as a Surrogate Standard for Evaluating the Performance of Its Auditing Methods?

Guo-Qiang Zhang, Yan Huang, Licong Cui

Proceedings of the AMIA 2017, 2017

2016

Biomedical Ontology Quality Assurance Using a Big Data Approach.

Licong Cui, Shiqiang Tao, Guo-Qiang Zhang

ACM Trans. Knowl. Discov. Data, 2016

FEDRR: fast, exhaustive detection of redundant hierarchical relations for quality improvement of large biomedical ontologies.

Guangming Xing, Guo-Qiang Zhang, Licong Cui

BioData Min., 2016

DCDS: A Real-time Data Capture and Personalized Decision Support System for Heart Failure Patients in Skilled Nursing Facilities.

Wei Zhu, Lingyun Luo, Tarun Jain, Rebecca S. Boxer, Licong Cui, Guo-Qiang Zhang

Proceedings of the AMIA 2016, 2016

ODaCCI: Ontology-guided Data Curation for Multisite Clinical Research Data Integration in the NINDS Center for SUDEP Research.

Licong Cui, Yan Huang, Shiqiang Tao, Samden D. Lhatoo, Guo-Qiang Zhang

Proceedings of the AMIA 2016, 2016

2015

FEDRR: Fast, Exhaustive Detection of Redundant Hierarchical Relations in Large Biomedical Ontologies.

Guangming Xing, Licong Cui, Guo-Qiang Zhang

Proceedings of International Workshop on Biomedical Data Mining, 2015

COBE: A Conjunctive Ontology Browser and Explorer for Visualizing SNOMED CT Fragments.

Mengmeng Sun, Wei Zhu, Shiqiang Tao, Licong Cui, Guo-Qiang Zhang

Proceedings of the AMIA 2015, 2015

COHeRE: Cross-Ontology Hierarchical Relation Examination for Ontology Quality Assurance.

Licong Cui

Proceedings of the AMIA 2015, 2015

2014

Multi-topic assignment for exploratory navigation of consumer health information in NetWellness using formal concept analysis.

Licong Cui, Rong Xu, Zhihui Luo, Susan Wentz, Kyle Scarberry, Guo-Qiang Zhang

BMC Medical Informatics Decis. Mak., 2014

Complex epilepsy phenotype extraction from narrative clinical discharge summaries.

Licong Cui, Satya Sanket Sahoo, Samden D. Lhatoo, Gaurav Garg, Prashant Rai, Alireza Bozorgi, Guo-Qiang Zhang

J. Biomed. Informatics, 2014

Epilepsy and seizure ontology: towards an epilepsy informatics infrastructure for clinical research and patient care.

Satya Sanket Sahoo, Samden D. Lhatoo, Deepak K. Gupta, Licong Cui, Meng Zhao, Catherine P. Jayapandian, Alireza Bozorgi, Guo-Qiang Zhang

J. Am. Medical Informatics Assoc., 2014

MaPLE: A MapReduce Pipeline for Lattice-based Evaluation and its application to SNOMED CT.

Guo-Qiang Zhang, Wei Zhu, Mengmeng Sun, Shiqiang Tao, Olivier Bodenreider, Licong Cui

Proceedings of the 2014 IEEE International Conference on Big Data (IEEE BigData 2014), 2014

MEDCIS: Multi-Modality Epilepsy Data Capture and Integration System.

Guo-Qiang Zhang, Licong Cui, Samden D. Lhatoo, Satya S. Sahoo

Proceedings of the AMIA 2014, 2014

A Semantic-based Approach for Exploring Consumer Health Questions Using UMLS.

Licong Cui, Shiqiang Tao, Guo-Qiang Zhang

Proceedings of the AMIA 2014, 2014

2013

Querying Complex Federated Clinical Data Using Ontological Mapping and Subsumption Reasoning.

Licong Cui, Remo Mueller, Satya Sanket Sahoo, Guo-Qiang Zhang

Proceedings of the IEEE International Conference on Healthcare Informatics, 2013

2012

Concatenation and Kleene Star on Deterministic finite Automata.

Guo-Qiang Zhang, Xiangnan Zhou, Robert Fraser, Licong Cui

Proceedings of the Quantitative Logic and Soft Computing, 2012

A generalized non-pumping Lemma for Regular Languages.

Licong Cui, Guo-Qiang Zhang

Proceedings of the Quantitative Logic and Soft Computing, 2012

EpiDEA: Extracting Structured Epilepsy and Seizure Information from Patient Discharge Summaries for Cohort Identification.

Licong Cui, Samden D. Lhatoo, Guo-Qiang Zhang, Satya Sanket Sahoo, Alireza Bozorgi

Proceedings of the AMIA 2012, 2012

2010

A set coverage problem.

Guo-Qiang Zhang, Licong Cui

Inf. Process. Lett., 2010

2009

Intuitionistic Fuzzy Linguistic Quantifiers Based on Intuitionistic Fuzzy-Valued Fuzzy Measures and integrals.

Licong Cui, Yongming Li, Xiaohong Zhang

Int. J. Uncertain. Fuzziness Knowl. Based Syst., 2009

2008

Linguistic quantifiers based on Choquet integrals.

Licong Cui, Yongming Li

Int. J. Approx. Reason., 2008