Li Shen

Orcid: 0000-0002-5443-0503

Affiliations:
  • University of Pennsylvania, Philadelphia, USA
  • Indiana University School of Medicine, Indianapolis, IN, USA (2007 - 2017)
  • University of Massachusetts Dartmouth, MA, USA (2004 - 2007)
  • Dartmouth College, Hanover, NH, USA (PhD 2004)


According to our database1, Li Shen authored at least 225 papers between 1998 and 2025.

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Bibliography

2025
Establishing group-level brain structural connectivity incorporating anatomical knowledge under latent space modeling.
Medical Image Anal., 2025

2024
Interpretable deep clustering survival machines for Alzheimer's disease subtype discovery.
Medical Image Anal., 2024

Leveraging Social Determinants of Health in Alzheimer's Research Using LLM-Augmented Literature Mining and Knowledge Graphs.
CoRR, 2024

Clustering Alzheimer's Disease Subtypes via Similarity Learning and Graph Diffusion.
CoRR, 2024

Knowledge-Driven Feature Selection and Engineering for Genotype Data with Large Language Models.
CoRR, 2024

Fairness-Aware Estimation of Graphical Models.
CoRR, 2024

Theorizing neuro-induced relationships between cognitive diversity, motivation, grit and academic performance in multidisciplinary engineering education context.
CoRR, 2024

Fine-Tuning Linear Layers Only Is a Simple yet Effective Way for Task Arithmetic.
CoRR, 2024

Dude: Dual Distribution-Aware Context Prompt Learning For Large Vision-Language Model.
CoRR, 2024

Multimodal Neurodegenerative Disease Subtyping Explained by ChatGPT.
CoRR, 2024

Volume-Optimal Persistence Homological Scaffolds of Hemodynamic Networks Covary with MEG Theta-Alpha Aperiodic Dynamics.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2024, 2024

Multiscale Estimation of Morphometricity for Revealing Neuroanatomical Basis of Cognitive Traits.
Proceedings of the IEEE International Symposium on Biomedical Imaging, 2024

Mapping Alzheimer's Disease Pseudo-Progression With Multimodal Biomarker Trajectory Embeddings.
Proceedings of the IEEE International Symposium on Biomedical Imaging, 2024

Preserving Human Large-Scale Brain Connectivity Fingerprint Identifiability with Random Projections.
Proceedings of the IEEE International Symposium on Biomedical Imaging, 2024

DALK: Dynamic Co-Augmentation of LLMs and KG to answer Alzheimer's Disease Questions with Scientific Literature.
Proceedings of the Findings of the Association for Computational Linguistics: EMNLP 2024, 2024

Causality-based Subject and Task Fingerprints using fMRI Time-series Data.
Proceedings of the 15th ACM International Conference on Bioinformatics, 2024

Online Bilevel Optimization: Regret Analysis of Online Alternating Gradient Methods.
Proceedings of the International Conference on Artificial Intelligence and Statistics, 2024

Integrative Analysis of Amyloid Imaging and Genetics Reveals Subtypes of Alzheimer Progression in Early Stage.
Proceedings of the Artificial Intelligence in Medicine - 22nd International Conference, 2024

2023
Brain-wide genome-wide colocalization study for integrating genetics, transcriptomics and brain morphometry in Alzheimer's disease.
NeuroImage, October, 2023

Integrative analysis of multi-omics and imaging data with incorporation of biological information via structural Bayesian factor analysis.
Briefings Bioinform., March, 2023

Modeling Path Importance for Effective Alzheimer's Disease Drug Repurposing.
CoRR, 2023

Incomplete Multimodal Learning for Complex Brain Disorders Prediction.
CoRR, 2023

Gene-SGAN: a method for discovering disease subtypes with imaging and genetic signatures via multi-view weakly-supervised deep clustering.
CoRR, 2023

Fairness-aware class imbalanced learning on multiple subgroups.
Proceedings of the Uncertainty in Artificial Intelligence, 2023

Fair Canonical Correlation Analysis.
Proceedings of the Advances in Neural Information Processing Systems 36: Annual Conference on Neural Information Processing Systems 2023, 2023

Class-Balanced Deep Learning with Adaptive Vector Scaling Loss for Dementia Stage Detection.
Proceedings of the Machine Learning in Medical Imaging - 14th International Workshop, 2023

Shape analysis of amygdala atrophy using SPHARM-OT.
Proceedings of the Medical Imaging 2023: Image Processing, 2023

Attentive Deep Canonical Correlation Analysis for Diagnosing Alzheimer's Disease Using Multimodal Imaging Genetics.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2023, 2023

Identifying Shared Neuroanatomic Architecture Between Cognitive Traits Through Multiscale Morphometric Correlation Analysis.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2023 Workshops, 2023

Integrating Multimodal Contrastive Learning and Cross-Modal Attention for Alzheimer's Disease Prediction in Brain Imaging Genetics.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2023

Interpretable Graph Convolutional Network for Alzheimer's Disease Diagnosis using Multi-Modal Imaging Genetics.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2023

Causal Effects of Environmental Exposures and Biological Traits on the Difference between Phenotypic and Chronological Ages.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2023

Multi-Group Tensor Canonical Correlation Analysis.
Proceedings of the 14th ACM International Conference on Bioinformatics, 2023

2022
Diagnosis of obsessive-compulsive disorder via spatial similarity-aware learning and fused deep polynomial network.
Medical Image Anal., 2022

Multi-task learning based structured sparse canonical correlation analysis for brain imaging genetics.
Medical Image Anal., 2022

Tensor-Based Multi-Modality Feature Selection and Regression for Alzheimer's Disease Diagnosis.
CoRR, 2022

Identifying genes associated with brain volumetric differences through tissue specific transcriptomic inference from GWAS summary data.
BMC Bioinform., 2022

Deep multiview learning to identify imaging-driven subtypes in mild cognitive impairment.
BMC Bioinform., 2022

Integrating multi-omics summary data using a Mendelian randomization framework.
Briefings Bioinform., 2022

Large-Scale Simulation of Quantum Computational Chemistry on a New Sunway Supercomputer.
Proceedings of the SC22: International Conference for High Performance Computing, 2022

Sparse Interpretation of Graph Convolutional Networks for Multi-modal Diagnosis of Alzheimer's Disease.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2022, 2022

Interpretable Graph Convolutional Network Of Multi-Modality Brain Imaging For Alzheimer's Disease Diagnosis.
Proceedings of the 19th IEEE International Symposium on Biomedical Imaging, 2022

Tensor-Based Multi-Modal Multi-Target Regression for Alzheimer's Disease Prediction.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022

Consistency of Graph Theoretical Measurements of Alzheimer's Disease Fiber Density Connectomes Across Multiple Parcellation Scales.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022

Using Optimal Transport to Improve Spherical Harmonic Quantification of Complex Biological Shapes.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022

Preference Matrix Guided Sparse Canonical Correlation Analysis for Genetic Study of Quantitative Traits in Alzheimer's Disease.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022

Mediation Analysis and Mixed-Effects Models for the Identification of Stage-specific Imaging Genetics Patterns in Alzheimer's Disease.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022

Genomics transformer for diagnosing Parkinson's disease.
Proceedings of the IEEE-EMBS International Conference on Biomedical and Health Informatics, 2022

Connectome transformer with anatomically inspired attention for Parkinson's diagnosis.
Proceedings of the BCB '22: 13th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics, Northbrook, Illinois, USA, August 7, 2022

2021
Identify Consistent Cross-Modality Imaging Genetic Patterns via Discriminant Sparse Canonical Correlation Analysis.
IEEE ACM Trans. Comput. Biol. Bioinform., 2021

Multi-Task Sparse Canonical Correlation Analysis with Application to Multi-Modal Brain Imaging Genetics.
IEEE ACM Trans. Comput. Biol. Bioinform., 2021

Improved Prediction of Cognitive Outcomes via Globally Aligned Imaging Biomarker Enrichments Over Progressions.
IEEE Trans. Biomed. Eng., 2021

A structural enriched functional network: An application to predict brain cognitive performance.
Medical Image Anal., 2021

Multidimensional representations in late-life depression: convergence in neuroimaging, cognition, clinical symptomatology and genetics.
CoRR, 2021

A Novel Bayesian Semi-parametric Model for Learning Heritable Imaging Traits.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2021 - 24th International Conference, Strasbourg, France, September 27, 2021

Topological Learning and Its Application to Multimodal Brain Network Integration.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2021 - 24th International Conference, Strasbourg, France, September 27, 2021

Brain imaging genetics: integrated analysis and machine learning.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021

Interpretable temporal graph neural network for prognostic prediction of Alzheimer's disease using longitudinal neuroimaging data.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2021

Interactive Visualization of Deep Learning for 3D Brain Data Analysis.
Proceedings of the 20th IEEE International Conference on Cognitive Informatics & Cognitive Computing, 2021

2020
Mining and visualizing high-order directional drug interaction effects using the FAERS database.
BMC Medical Informatics Decis. Mak., March, 2020

Associating Multi-Modal Brain Imaging Phenotypes and Genetic Risk Factors via a Dirty Multi-Task Learning Method.
IEEE Trans. Medical Imaging, 2020

Joint Multi-Modal Longitudinal Regression and Classification for Alzheimer's Disease Prediction.
IEEE Trans. Medical Imaging, 2020

Brain Imaging Genomics: Integrated Analysis and Machine Learning.
Proc. IEEE, 2020

Hierarchical Structured Sparse Learning for Schizophrenia Identification.
Neuroinformatics, 2020

A multi-model deep convolutional neural network for automatic hippocampus segmentation and classification in Alzheimer's disease.
NeuroImage, 2020

Informatics and machine learning methods for health applications.
BMC Medical Informatics Decis. Mak., 2020

Cognitive biomarker prioritization in Alzheimer's Disease using brain morphometric data.
BMC Medical Informatics Decis. Mak., 2020

Multi-modal neuroimaging feature selection with consistent metric constraint for diagnosis of Alzheimer's disease.
Medical Image Anal., 2020

Detecting genetic associations with brain imaging phenotypes in Alzheimer's disease via a novel structured SCCA approach.
Medical Image Anal., 2020

Enhanced Balanced Min Cut.
Int. J. Comput. Vis., 2020

Brain-wide structural connectivity alterations under the control of Alzheimer risk genes.
Int. J. Comput. Biol. Drug Des., 2020

Drug-drug interaction prediction based on co-medication patterns and graph matching.
Int. J. Comput. Biol. Drug Des., 2020

Grouping effects of sparse CCA models in variable selection.
CoRR, 2020

Personalized Prioritization of Cognitive Biomarkers in Alzheimer's Disease via Learning to Rank using Brain Morphometric Data.
CoRR, 2020

Effect of APOE ε4 on multimodal brain connectomic traits: a persistent homology study.
BMC Bioinform., 2020

Accelerating bioinformatics research with International Conference on Intelligent Biology and Medicine 2020.
BMC Bioinform., 2020

Regional imaging genetic enrichment analysis.
Bioinform., 2020

Identifying diagnosis-specific genotype-phenotype associations via joint multitask sparse canonical correlation analysis and classification.
Bioinform., 2020

Ideas for how informaticians can get involved with COVID-19 research.
BioData Min., 2020

Predicting Longitudinal Outcomes of Alzheimer's Disease via a Tensor-Based Joint Classification andRegression Model.
Proceedings of the Pacific Symposium on Biocomputing 2020, 2020

Spatial Similarity-Aware Learning and Fused Deep Polynomial Network for Detection of Obsessive-Compulsive Disorder.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2020, 2020

Persistent Feature Analysis of Multimodal Brain Networks Using Generalized Fused Lasso for EMCI Identification.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2020, 2020

Structural Connectivity Enriched Functional Brain Network Using Simplex Regression with GraphNet.
Proceedings of the Machine Learning in Medical Imaging - 11th International Workshop, 2020

Deep Network-Based Feature Selection for Imaging Genetics: Application to Identifying Biomarkers for Parkinson's Disease.
Proceedings of the 17th IEEE International Symposium on Biomedical Imaging, 2020

Deep Multiview Learning to Identify Population Structure with Multimodal Imaging.
Proceedings of the 20th IEEE International Conference on Bioinformatics and Bioengineering, 2020

Estimating Hard-tissue Conditions from Dental Images via Machine Learning.
Proceedings of the 20th IEEE International Conference on Bioinformatics and Bioengineering, 2020

Polygenic mediation analysis of Alzheimer's disease implicated intermediate amyloid imaging phenotypes.
Proceedings of the AMIA 2020, 2020

2019
Mining Directional Drug Interaction Effects on Myopathy Using the FAERS Database.
IEEE J. Biomed. Health Informatics, 2019

A Unified Model for Joint Normalization and Differential Gene Expression Detection in RNA-Seq Data.
IEEE ACM Trans. Comput. Biol. Bioinform., 2019

Identifying Candidate Genetic Associations with MRI-Derived AD-Related ROI via Tree-Guided Sparse Learning.
IEEE ACM Trans. Comput. Biol. Bioinform., 2019

Joint between-sample normalization and differential expression detection through ℓ 0-regularized regression.
BMC Bioinform., 2019

Identifying progressive imaging genetic patterns via multi-task sparse canonical correlation analysis: a longitudinal study of the ADNI cohort.
Bioinform., 2019

Prioritizing Amyloid Imaging Biomarkers in Alzheimer's Disease via Learning to Rank.
Proceedings of the Multimodal Brain Image Analysis and Mathematical Foundations of Computational Anatomy, 2019

Diffeomorphic Metric Learning and Template Optimization for Registration-Based Predictive Models.
Proceedings of the Multimodal Brain Image Analysis and Mathematical Foundations of Computational Anatomy, 2019

A Dirty Multi-task Learning Method for Multi-modal Brain Imaging Genetics.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2019, 2019

Rapid Acceleration of the Permutation Test via Transpositions.
Proceedings of the Connectomics in NeuroImaging - Third International Workshop, 2019

Diagnosis Status Guided Brain Imaging Genetics Via Integrated Regression And Sparse Canonical Correlation Analysis.
Proceedings of the 16th IEEE International Symposium on Biomedical Imaging, 2019

Statistical Inference on the Number of Cycles in Brain Networks.
Proceedings of the 16th IEEE International Symposium on Biomedical Imaging, 2019

Mining Regional Imaging Genetic Associations via Voxel-wise Enrichment Analysis.
Proceedings of the 2019 IEEE EMBS International Conference on Biomedical & Health Informatics, 2019

Prioritization of Cognitive Assessments in Alzheimer's Disease via Learning to Rank using Brain Morphometric Data.
Proceedings of the 2019 IEEE EMBS International Conference on Biomedical & Health Informatics, 2019

2018
GPU Accelerated Browser for Neuroimaging Genomics.
Neuroinformatics, 2018

Pattern Discovery from High-Order Drug-Drug Interaction Relations.
J. Heal. Informatics Res., 2018

Longitudinal Genotype-Phenotype Association Study through Temporal Structure Auto-Learning Predictive Model.
J. Comput. Biol., 2018

Drug Recommendation toward Safe Polypharmacy.
CoRR, 2018

Quantitative trait loci identification for brain endophenotypes via new additive model with random networks.
Bioinform., 2018

A novel SCCA approach via truncated ℓ1-norm and truncated group lasso for brain imaging genetics.
Bioinform., 2018

Network approaches to systems biology analysis of complex disease: integrative methods for multi-omics data.
Briefings Bioinform., 2018

Session introduction.
Proceedings of the Biocomputing 2018: Proceedings of the Pacific Symposium, 2018

Heritability Estimation of Reliable Connectomic Features.
Proceedings of the Connectomics in NeuroImaging - Second International Workshop, 2018

Image Registration and Predictive Modeling: Learning the Metric on the Space of Diffeomorphisms.
Proceedings of the Shape in Medical Imaging, 2018

Joint High-Order Multi-Task Feature Learning to Predict the Progression of Alzheimer's Disease.
Proceedings of the Medical Image Computing and Computer Assisted Intervention - MICCAI 2018, 2018

Joint exploration and mining of memory-relevant brain anatomic and connectomic patterns via a three-way association model.
Proceedings of the 15th IEEE International Symposium on Biomedical Imaging, 2018

Predicting progressions of cognitive outcomes via high-order multi-modal multi-task feature learning.
Proceedings of the 15th IEEE International Symposium on Biomedical Imaging, 2018

Multiple incomplete views clustering via non-negative matrix factorization with its application in Alzheimer's disease analysis.
Proceedings of the 15th IEEE International Symposium on Biomedical Imaging, 2018

Interactive Machine Learning by Visualization: A Small Data Solution.
Proceedings of the IEEE International Conference on Big Data (IEEE BigData 2018), 2018

A Unified Model for Robust Differential Expression Analysis of RNA-Seq Data.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

Fast Multi-Task SCCA Learning with Feature Selection for Multi-Modal Brain Imaging Genetics.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

2017
Two-dimensional enrichment analysis for mining high-level imaging genetic associations.
Brain Informatics, 2017

Brain explorer for connectomic analysis.
Brain Informatics, 2017

Tissue-specific network-based genome wide study of amygdala imaging phenotypes to identify functional interaction modules.
Bioinform., 2017

Identification of associations between genotypes and longitudinal phenotypes via temporally-constrained group sparse canonical correlation analysis.
Bioinform., 2017

Longitudinal Genotype-Phenotype Association Study via Temporal Structure Auto-learning Predictive Model.
Proceedings of the Research in Computational Molecular Biology, 2017

Identification of Discriminative Imaging Proteomics Associations in Alzheimer's Disease via a Novel Sparse Correlation Model>.
Proceedings of the Biocomputing 2017: Proceedings of the Pacific Symposium, 2017

Session Introduction.
Proceedings of the Biocomputing 2017: Proceedings of the Pacific Symposium, 2017

Transcriptome-Guided Imaging Genetic Analysis via a Novel Sparse CCA Algorithm.
Proceedings of the Graphs in Biomedical Image Analysis, Computational Anatomy and Imaging Genetics, 2017

A Fast SCCA Algorithm for Big Data Analysis in Brain Imaging Genetics.
Proceedings of the Graphs in Biomedical Image Analysis, Computational Anatomy and Imaging Genetics, 2017

Predicting Interrelated Alzheimer's Disease Outcomes via New Self-learned Structured Low-Rank Model.
Proceedings of the Information Processing in Medical Imaging, 2017

Identifying Associations Between Brain Imaging Phenotypes and Genetic Factors via a Novel Structured SCCA Approach.
Proceedings of the Information Processing in Medical Imaging, 2017

Pattern Discovery from Directional High-Order Drug-Drug Interaction Relations.
Proceedings of the 2017 IEEE International Conference on Healthcare Informatics, 2017

Predicting High-Order Directional Drug-Drug Interaction Relations.
Proceedings of the 2017 IEEE International Conference on Healthcare Informatics, 2017

Network-based genome wide study of hippocampal imaging phenotype in Alzheimer's Disease to identify functional interaction modules.
Proceedings of the 2017 IEEE International Conference on Acoustics, 2017

BECA: A Software Tool for Integrated Visualization of Human Brain Data.
Proceedings of the Brain Informatics - International Conference, 2017

2016
Identifying Multimodal Intermediate Phenotypes Between Genetic Risk Factors and Disease Status in Alzheimer's Disease.
Neuroinformatics, 2016

Structured sparse CCA for brain imaging genetics via graph OSCAR.
BMC Syst. Biol., 2016

Structured sparse canonical correlation analysis for brain imaging genetics: an improved GraphNet method.
Bioinform., 2016

Network-based analysis of genetic variants associated with hippocampal volume in Alzheimer's disease: a study of ADNI cohorts.
BioData Min., 2016

Multigraph Visualization for Feature Classification of Brain Network Data.
Proceedings of the 7th International EuroVis Workshop on Visual Analytics, 2016

Diagnosis-Guided Method for Identifying Multi-Modality Neuroimaging Biomarkers Associated with Genetic Risk Factors in Alzheimer's Disease.
Proceedings of the Biocomputing 2016: Proceedings of the Pacific Symposium, 2016

Building a surface atlas of hippocampal subfields from high resolution T2-weighted MRI scans using landmark-free surface registration.
Proceedings of the IEEE 59th International Midwest Symposium on Circuits and Systems, 2016

A New Statistical Image Analysis Approach and Its Application to Hippocampal Morphometry.
Proceedings of the Medical Imaging and Augmented Reality - 7th International Conference, 2016

New Probabilistic Multi-graph Decomposition Model to Identify Consistent Human Brain Network Modules.
Proceedings of the IEEE 16th International Conference on Data Mining, 2016

Sparse Canonical Correlation Analysis via truncated ℓ1-norm with application to brain imaging genetics.
Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2016

2015
Erratum to: Improving protein order-disorder classification using charge-hydropathy plots.
BMC Bioinform., 2015

The role of visualization and 3-D printing in biological data mining.
BioData Min., 2015

Surface-based morphometric analysis of hippocampal subfields in mild cognitive impairment and Alzheimer's disease.
Proceedings of the IEEE 58th International Midwest Symposium on Circuits and Systems, 2015

Identifying Connectome Module Patterns via New Balanced Multi-graph Normalized Cut.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2015, 2015

Integrated Visualization of Human Brain Connectome Data.
Proceedings of the Brain Informatics and Health - 8th International Conference, 2015

GN-SCCA: GraphNet Based Sparse Canonical Correlation Analysis for Brain Imaging Genetics.
Proceedings of the Brain Informatics and Health - 8th International Conference, 2015

2014
Identifying the Neuroanatomical Basis of Cognitive Impairment in Alzheimer's Disease by Correlation- and Nonlinearity-Aware Sparse Bayesian Learning.
IEEE Trans. Medical Imaging, 2014

Improving protein order-disorder classification using charge-hydropathy plots.
BMC Bioinform., 2014

Transcriptome-guided amyloid imaging genetic analysis via a novel structured sparse learning algorithm.
Bioinform., 2014

Computational genetics analysis of grey matter density in Alzheimer's disease.
BioData Min., 2014

Accelerating Sparse Canonical Correlation Analysis for Large Brain Imaging Genetics Data.
Proceedings of the Annual Conference of the Extreme Science and Engineering Discovery Environment, 2014

Building a surface atlas of hippocampal subfields from MRI scans using FreeSurfer, FIRST and SPHARM.
Proceedings of the IEEE 57th International Midwest Symposium on Circuits and Systems, 2014

Human Connectome Module Pattern Detection Using a New Multi-graph MinMax Cut Model.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2014, 2014

A Novel Structure-Aware Sparse Learning Algorithm for Brain Imaging Genetics.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2014, 2014

Joint identification of imaging and proteomics biomarkers of Alzheimer's disease using network-guided sparse learning.
Proceedings of the IEEE 11th International Symposium on Biomedical Imaging, 2014

Data synthesis and method evaluation for brain imaging genetics.
Proceedings of the IEEE 11th International Symposium on Biomedical Imaging, 2014

2013
Interactive object extraction by merging regions with k-global maximal similarity.
Neurocomputing, 2013

Network-Guided Sparse Learning for Predicting Cognitive Outcomes from MRI Measures.
Proceedings of the Multimodal Brain Image Analysis - Third International Workshop, 2013

PARP1 Gene Variation and Microglial Activity on [11C]PBR28 PET in Older Adults at Risk for Alzheimer's Disease.
Proceedings of the Multimodal Brain Image Analysis - Third International Workshop, 2013

A Graph-Based Integration of Multimodal Brain Imaging Data for the Detection of Early Mild Cognitive Impairment (E-MCI).
Proceedings of the Multimodal Brain Image Analysis - Third International Workshop, 2013

A New Sparse Simplex Model for Brain Anatomical and Genetic Network Analysis.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2013, 2013

Genetic Clustering on the Hippocampal Surface for Genome-Wide Association Studies.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2013, 2013

Structural Brain Network Constrained Neuroimaging Marker Identification for Predicting Cognitive Functions.
Proceedings of the Information Processing in Medical Imaging, 2013

Exploring Interestingness in a Computational Evolution System for the Genome-Wide Genetic Analysis of Alzheimer's Disease.
Proceedings of the Genetic Programming Theory and Practice XI [GPTP 2013, 2013

2012
Erratum to "A large scale multivariate parallel ICA method reveals novel imaging-genetic relationships for Alzheimer's Disease in the ADNI cohort" [Neuroimage 60/3(2012) 1608-1621].
NeuroImage, 2012

A large scale multivariate parallel ICA method reveals novel imaging-genetic relationships for Alzheimer's disease in the ADNI cohort.
NeuroImage, 2012

From phenotype to genotype: an association study of longitudinal phenotypic markers to Alzheimer's disease relevant SNPs.
Bioinform., 2012

Identifying disease sensitive and quantitative trait-relevant biomarkers from multidimensional heterogeneous imaging genetics data via sparse multimodal multitask learning.
Bioinform., 2012

Identifying quantitative trait loci via group-sparse multitask regression and feature selection: an imaging genetics study of the ADNI cohort.
Bioinform., 2012

Principles of Computational Modeling in NeuroscienceDavid Sterratt, Bruce Graham, Andrew Gillies and David Willshaw.
Briefings Bioinform., 2012

Pattern Visualization of Human Connectome Data.
Proceedings of the 14th Eurographics Conference on Visualization, 2012

High-Order Multi-Task Feature Learning to Identify Longitudinal Phenotypic Markers for Alzheimer's Disease Progression Prediction.
Proceedings of the Advances in Neural Information Processing Systems 25: 26th Annual Conference on Neural Information Processing Systems 2012. Proceedings of a meeting held December 3-6, 2012

Multimodal Neuroimaging Predictors for Cognitive Performance Using Structured Sparse Learning.
Proceedings of the Multimodal Brain Image Analysis - Second International Workshop, 2012

Sparse Bayesian multi-task learning for predicting cognitive outcomes from neuroimaging measures in Alzheimer's disease.
Proceedings of the 2012 IEEE Conference on Computer Vision and Pattern Recognition, 2012

2011
Regional reproducibility of pulsed arterial spin labeling perfusion imaging at 3T.
NeuroImage, 2011

Voxelwise gene-wide association study (vGeneWAS): Multivariate gene-based association testing in 731 elderly subjects.
NeuroImage, 2011

Identifying AD-Sensitive and Cognition-Relevant Imaging Biomarkers via Joint Classification and Regression.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2011, 2011

Hippocampal Surface Mapping of Genetic Risk Factors in AD via Sparse Learning Models.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention - MICCAI 2011, 2011

Identifying Neuroimaging and Proteomic Biomarkers for MCI and AD via the Elastic Net.
Proceedings of the Multimodal Brain Image Analysis, First International Workshop, 2011

Sparse multi-task regression and feature selection to identify brain imaging predictors for memory performance.
Proceedings of the IEEE International Conference on Computer Vision, 2011

2010
Age-related neuroinflammation in non-demented elderly adults: Preliminary findings with the TSPO ligand [11C]PBR28.
NeuroImage, 2010

Genome-wide analysis reveals novel genes influencing temporal lobe structure with relevance to neurodegeneration in Alzheimer's disease.
NeuroImage, 2010

Voxelwise genome-wide association study (vGWAS).
NeuroImage, 2010

Whole genome association study of brain-wide imaging phenotypes for identifying quantitative trait loci in MCI and AD: A study of the ADNI cohort.
NeuroImage, 2010

Sparse Bayesian Learning for Identifying Imaging Biomarkers in AD Prediction.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2010

A Framework for 3D Analysis of Facial Morphology in Fetal Alcohol Syndrome.
Proceedings of the Medical Imaging and Augmented Reality - 5th International Workshop, 2010

2009
Mining 3D Shape Data for Morphometric Pattern Discovery.
Proceedings of the Encyclopedia of Data Warehousing and Mining, Second Edition (4 Volumes), 2009

Fourier method for large-scale surface modeling and registration.
Comput. Graph., 2009

Data synthesis and tool development for exploring imaging genomic patterns.
Proceedings of the 2009 IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2009

2007
Weighted Fourier Series Representation and Its Application to Quantifying the Amount of Gray Matter.
IEEE Trans. Medical Imaging, 2007

A Novel Surface Registration Algorithm With Biomedical Modeling Applications.
IEEE Trans. Inf. Technol. Biomed., 2007

Three-dimensional Models for Cardiac Bioelectricity Simulation: Cell to Organ.
Simul., 2007

Surface Harmonics for Shape Modeling.
Proceedings of the International Conference on Image Processing, 2007

Efficient Registration of 3D SPHARM Surfaces.
Proceedings of the Fourth Canadian Conference on Computer and Robot Vision (CRV 2007), 2007

Morphometric Analysis of Hippocampal Shape in Mild Cognitive Impairment: An Imaging Genetics Study.
Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, 2007

2006
Spherical mapping for processing of 3D closed surfaces.
Image Vis. Comput., 2006

Fast surface alignment for cardiac spatio-temporal modeling: application to ischemic cardiac shape modeling.
Proceedings of the Medical Imaging 2006: Image Processing, 2006

Spatio-temporal analysis tool for modeling pulmonary nodules in MR images.
Proceedings of the Medical Imaging 2006: Visualization, 2006

Multi-scale Voxel-Based Morphometry Via Weighted Spherical Harmonic Representation.
Proceedings of the Medical Imaging and Augmented Reality, 2006

Large-Scale Modeling of Parametric Surfaces Using Spherical Harmonics.
Proceedings of the 3rd International Symposium on 3D Data Processing, 2006

Shape Analysis and Spatio-Temporal Tracking of Mesoscale Eddies in Miami Isopycnic Coordinate Ocean Model.
Proceedings of the 3rd International Symposium on 3D Data Processing, 2006

Hemispherical Harmonic Surface Description and Applications to Medical Image Analysis.
Proceedings of the 3rd International Symposium on 3D Data Processing, 2006

A Spatio-Temporal Modeling Method for Shape Representation.
Proceedings of the 3rd International Symposium on 3D Data Processing, 2006

2005
A clustering-based approach for prediction of cardiac resynchronization therapy.
Proceedings of the 2005 ACM Symposium on Applied Computing (SAC), 2005

Functional analysis of cardiac MR images using SPHARM modeling.
Proceedings of the Medical Imaging 2005: Image Processing, 2005

An interactive 3D visualization and manipulation tool for effective assessment of angiogenesis and arteriogenesis using computed tomographic angiography.
Proceedings of the Medical Imaging 2005: Visualization, 2005

A Prediction Framework for Cardiac Resynchronization Therapy Via 4D Cardiac Motion Analysis.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2005

Surface Alignment of 3D Spherical Harmonic Models: Application to Cardiac MRI Analysis.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2005

K-means+ Method for Improving Gene Selection for Classification of Microarray Data.
Proceedings of the Fourth International IEEE Computer Society Computational Systems Bioinformatics Conference Workshops & Poster Abstracts, 2005

2004
A surface-based approach for classification of 3D neuroanatomic structures.
Intell. Data Anal., 2004

Data Brokers: Building Collections through Automated Negotiation.
Proceedings of the Methods and Applications of Artificial Intelligence, 2004

Shape-based discriminative analysis of combined bilateral hippocampi using multiple object alignment.
Proceedings of the Medical Imaging 2004: Image Processing, 2004

Generating fuzzy semantic metadata describing spatial relations from images using the R-histogram.
Proceedings of the ACM/IEEE Joint Conference on Digital Libraries, 2004

Spherical Parameterization for 3D Surface Analysis in Volumetric Images.
Proceedings of the International Conference on Information Technology: Coding and Computing (ITCC'04), 2004

2003
A Spatio-temporal Multi-modal Data Management and Analysis Environment for Tracking MS Lesions.
Proceedings of the 15th International Conference on Scientific and Statistical Database Management (SSDBM 2003), 2003

Hippocampal shape analysis: surface-based representation and classification.
Proceedings of the Medical Imaging 2003: Image Processing, 2003

Morphometric Analysis of Brain Structures for Improved Discrimination.
Proceedings of the Medical Image Computing and Computer-Assisted Intervention, 2003

SCENS: A System for the Mediated Sharing of Sensitive Data.
Proceedings of the ACM/IEEE 2003 Joint Conference on Digital Libraries (JCDL 2003), 2003

2002
MetaDL: A Digital Library of Metadata for Sensitive or Complex Research Data.
Proceedings of the Research and Advanced Technology for Digital Libraries, 2002

2000
Fast Association Discovery in Derivative Transaction Collections.
Knowl. Inf. Syst., 2000

Mining the Most Interesting Web Access Associations.
Proceedings of WebNet 2000 - World Conference on the WWW and Internet, San Antonio, Texas, USA, October 30, 2000

1999
New Algorithms for Efficient Mining of Association Rules.
Inf. Sci., 1999

1998
Mining Flexible Multiple-Level Association Rules in All Concept Hierarchies (Extended Abstract).
Proceedings of the Database and Expert Systems Applications, 9th International Conference, 1998


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