Leyla Jael Castro

According to our database, Leyla Jael Castro authored at least 73 papers between 2005 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2024

Synthetic data: How could it be used for infectious disease research?

Styliani-Christina Fragkouli, Dhwani Solanki, Leyla Jael Castro, Fotis E. Psomopoulos, Núria Queralt-Rosinach, Davide Cirillo, Lisa C. Crossman

CoRR, 2024

2023

Correction: 39 Hints to Facilitate the Use of Semantics for Data on Agriculture and Nutrition.

Caterina Caracciolo, Sophie Aubin, Clément Jonquet, Emna Amdouni, Romain David, Leyla J. García, Brandon Whitehead, Catherine Roussey, Armando Stellato, Ferdinando Villa

Data Sci. J., January, 2023

Bioschemas training profiles: A set of specifications for standardizing training information to facilitate the discovery of training programs and resources.

Leyla Jael Castro, Patricia M. Palagi, Niall Beard, Teresa K. Attwood, Michelle D. Brazas

PLoS Comput. Biol., 2023

An Analysis of Crosswalks from Research Data Schemas to Schema.org.

Mingfang Wu, Stephen M. Richard, Chantelle Verhey, Leyla Jael Castro, Baptiste Cecconi, Nick S. Juty

Data Intell., 2023

Foundational Competencies and Responsibilities of a Research Software Engineer.

Florian Goth, Renato Alves, Matthias Braun, Leyla Jael Castro, Gerasimos Chourdakis, Simon Christ, Jeremy Cohen, Fredo Erxleben, Jean-Noël Grad, Magnus Hagdorn, Toby Hodges, Guido Juckeland, Dominic Kempf, Anna-Lena Lamprecht, Jan Linxweiler, Moritz Schwarzmeier, Heidi Seibold, Jan Philipp Thiele, Harald von Waldow, Samantha Wittke

CoRR, 2023

OntoClue, a framework to compare vector-based approaches for document relatedness using the RELISH corpus.

Rohitha Ravinder, Tim Fellerhoff, Vishnu Dadi, Lukas Geist, Guillermo Rocamora, Muhammad Talha, Dietrich Rebholz-Schuhmann, Leyla Jael Castro

Proceedings of the 14th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences (SWAT4HCLS 2023), 2023

Comparative analysis of protein function text-based embeddings and their applicability to prediction tasks.

Rohitha Ravinder, Leyla Jael Castro, Martin Hofmann-Apitius, Dietrich Rebholz-Schuhmann

Proceedings of the 14th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences (SWAT4HCLS 2023), 2023

Multilabel-classification task for Medline abstracts.

Nelson Quiñones, Cesar Canales, Javier Torres, Dietrich Rebholz-Schuhmann, Leyla Jael Castro, Andrés Aristizábal

Proceedings of the 14th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences (SWAT4HCLS 2023), 2023

Document-to-document relevance assessment for TREC Genomics Track 2005.

Olga L. Giraldo, María Fernanda Cadena, Andrea Robayo-Gama, Dhwani Solanki, Tim Fellerhoff, Lukas Geist, Rohitha Ravinder, Muhammad Talha, Dietrich Rebholz-Schuhmann, Leyla Jael Castro

Proceedings of the 14th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences (SWAT4HCLS 2023), 2023

A metadata analysis for machine-actionable Software Management Plans.

Olga L. Giraldo, Renato Alves, Dimitrios Bampalikis, José M. Fernández, Eva Martin Del Pico, Fotis E. Psomopoulos, Nelson Quiñones, Dhwani Solanki, Allegra Via, Leyla Jael Castro

Proceedings of the 14th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences (SWAT4HCLS 2023), 2023

Results of the Ontology Alignment Evaluation Initiative 2023.

Mina Abd Nikooie Pour, Alsayed Algergawy, Patrice Buche, Leyla Jael Castro, Jiaoyan Chen, Adrien Coulet, Julien Cufi, Hang Dong, Omaima Fallatah, Daniel Faria, Irini Fundulaki, Sven Hertling, Yuan He, Ian Horrocks, Martin Huschka, Liliana Ibanescu, Sarika Jain, Ernesto Jiménez-Ruiz, Naouel Karam, Patrick Lambrix, Huanyu Li, Ying Li, Pierre Monnin, Engy Nasr, Heiko Paulheim, Catia Pesquita, Tzanina Saveta, Pavel Shvaiko, Guilherme Sousa, Cássia Trojahn, Jana Vatascinová, Mingfang Wu, Beyza Yaman, Ondrej Zamazal, Lu Zhou

Proceedings of the 18th International Workshop on Ontology Matching co-located with the 22nd International Semantic Web Conference (ISWC 2023), 2023

NFDI4DS Infrastructure and Services.

Sonja Schimmler, Bianca Wentzel, Arnim Bleier, Stefan Dietze, Saurav Karmakar, Peter Mutschke, Angelie Kraft, Tilahun Abedissa Taffa, Ricardo Usbeck, Zeyd Boukhers, Sören Auer, Leyla Jael Castro, Marcel R. Ackermann, Thomas Neumuth, Daniel Schneider, Ziawasch Abedjan, Atif Latif, Fidan Limani, Raia Abu Ahmad, Georg Rehm, Sima Attar Khorasani, Matthias Lieber

Proceedings of the 53. Jahrestagung der Gesellschaft für Informatik, INFORMATIK 2023, Designing Future, 2023

Research Knowledge Graphs in NFDI4DS.

Saurav Karmakar, Matthäus Zloch, Fidan Limani, Benjamin Zapilko, Sharmila Upadhyaya, Jennifer D'Souza, Leyla Jael Castro, Georg Rehm, Marcel R. Ackermann, Harald Sack, Zeyd Boukhers, Sonja Schimmler, Danilo Dessì, Peter Mutschke, Stefan Dietze

Proceedings of the 53. Jahrestagung der Gesellschaft für Informatik, INFORMATIK 2023, Designing Future, 2023

A Comparison of Vector-based Approaches for Document Similarity Using the RELISH Corpus.

Rohitha Ravinder, Tim Fellerhoff, Vishnu Dadi, Lukas Geist, Guillermo Rocamora, Muhammad Talha, Dietrich Rebholz-Schuhmann, Leyla Jael Castro

Proceedings of the 6th Workshop on Semantic Web Solutions for Large-Scale Biomedical Data Analytics co-located with ESWC 2023, 2023

A metadata schema for machine-actionable Software Management Plans.

Leyla Jael Castro, Dietrich Rebholz-Schuhmann, Nelson Quiñones, Dimitrios Bampalikis, Olga L. Giraldo, Eva Martin Del Pico, Allegra Via, Dhwani Solanki, Lukas Geist, Fotis E. Psomopoulos, Renato Alves, José María Fernández González

Proceedings of the 3rd Workshop on Metadata and Research (objects) Management for Linked Open Science, 2023

DaMaLOS 2023 Editorial Note.

Leyla Jael Castro, Dietrich Rebholz-Schuhmann, Danilo Dessì, Jens Dierkes, Sonja Schimmler

Proceedings of the 3rd Workshop on Metadata and Research (objects) Management for Linked Open Science, 2023

Harmonising, Harvesting, and Searching Metadata Across a Repository Federation.

Steffen Neumann, Felix Bach, Leyla Jael Castro, Tillmann Fischer, Stefan Hofmann, Pei-Chi Huang, Nicole Jung, Bhavin Katabathuni, Fabian Mauz, René Meier, Venkata Chandrasekhar Nainala, Noura Rayya, Christoph Steinbeck, Oliver Koepler

Proceedings of the 1st Conference on Research Data Infrastructure - Connecting Communities, 2023

Machine-Actionable Metadata for Software and Software Management Plans for NFDI.

Olga L. Giraldo, Danilo Dessì, Stefan Dietze, Dietrich Rebholz-Schuhmann, Leyla Jael Castro

Proceedings of the 1st Conference on Research Data Infrastructure - Connecting Communities, 2023

RO-Crates Meets FAIR Digital Objects.

Leyla Jael Castro, Stian Soiland-Reyes, Dietrich Rebholz-Schuhmann

Proceedings of the 1st Conference on Research Data Infrastructure - Connecting Communities, 2023

Schema.org as a Lightweight Harmonization Approach for NFDI.

Leyla Jael Castro, Juliane Fluck, Daniel Arend, Matthias Lange, Daniel Martini, Steffen Neumann, Sonja Schimmler, Dietrich Rebholz-Schuhmann

Proceedings of the 1st Conference on Research Data Infrastructure - Connecting Communities, 2023

Enhancing Reproducibility in Research Through FAIR Digital Objects.

Zeyd Boukhers, Leyla Jael Castro

Proceedings of the 1st Conference on Research Data Infrastructure - Connecting Communities, 2023

2022

Packaging research artefacts with RO-Crate.

Stian Soiland-Reyes, Peter Sefton, Mercè Crosas, Leyla Jael Castro, Frederik Coppens, José María Fernández, Daniel Garijo, Björn A. Grüning, Marco La Rosa, Simone Leo, Eoghan Ó Carragáin, Marc Portier, Ana Trisovic, RO-Crate Community, Paul Groth, Carole A. Goble

Data Sci., 2022

Online Information Retrieval Evaluation using the STELLA Framework.

Timo Breuer, Narges Tavakolpoursaleh, Johann Schaible, Daniel Hienert, Philipp Schaer, Leyla Jael Castro

CoRR, 2022

Ontology-based identification and prioritization of candidate drugs for epilepsy from literature.

Bernd Müller, Leyla Jael Castro, Dietrich Rebholz-Schuhmann

J. Biomed. Semant., 2022

DCSO: towards an ontology for machine-actionable data management plans.

João Cardoso, Leyla Jael Castro, Fajar J. Ekaputra, Marie C. Jacquemot, Marek Suchánek, Tomasz Miksa, José Borbinha

J. Biomed. Semant., 2022

Results of the Ontology Alignment Evaluation Initiative 2022.

Mina Abd Nikooie Pour, Alsayed Algergawy, Patrice Buche, Leyla Jael Castro, Jiaoyan Chen, Hang Dong, Omaima Fallatah, Daniel Faria, Irini Fundulaki, Sven Hertling, Yuan He, Ian Horrocks, Martin Huschka, Liliana Ibanescu, Ernesto Jiménez-Ruiz, Naouel Karam, Amir Laadhar, Patrick Lambrix, Huanyu Li, Ying Li, Franck Michel, Engy Nasr, Heiko Paulheim, Catia Pesquita, Tzanina Saveta, Pavel Shvaiko, Cássia Trojahn, Chantelle Verhey, Mingfang Wu, Beyza Yaman, Ondrej Zamazal, Lu Zhou

Proceedings of the 17th International Workshop on Ontology Matching (OM 2022) co-located with the 21th International Semantic Web Conference (ISWC 2022), 2022

2021

Embeddings of Gene Ontology (GO) using OWL2Vec.

Ashley Ritchie, Jiaoyan Chen, Leyla Jael Castro, Dietrich Rebholz-Schuhmann, Ernesto Jiménez-Ruiz

Dataset, June, 2021

UniProt: the universal protein knowledgebase in 2021.

Alex Bateman, Maria Jesus Martin, Sandra E. Orchard, Michele Magrane, Rahat Agivetova, Shadab Ahmad, Emanuele Alpi, Emily H. Bowler-Barnett, Ramona Britto, Borisas Bursteinas, Hema Bye-A-Jee, Ray Coetzee, Austra Cukura, Alan W. Sousa da Silva, Paul Denny, Tunca Dogan, Thankgod Ebenezer, Jun Fan, Leyla Jael García Castro, Penelope Garmiri, George E. Georghiou, Leonardo Gonzales, Emma Hatton-Ellis, Abdulrahman Hussein, Alexandr Ignatchenko, Giuseppe Insana, Rizwan Ishtiaq, Petteri Jokinen, Vishal Joshi, Dushyanth Jyothi, Antonia Lock, Rodrigo Lopez, Aurelien Luciani, Jie Luo, Yvonne Lussi, Alistair MacDougall, Fábio Madeira, Mahdi Mahmoudy, Manuela Menchi, Alok Mishra, Katie Moulang, Andrew Nightingale, Carla Susana Oliveira, Sangya Pundir, Guoying Qi, Shriya Raj, Daniel Rice, Milagros Rodríguez-López, Rabie Saidi, Joseph Sampson, Tony Sawford, Elena Speretta, Edward Turner, Nidhi Tyagi, Preethi Vasudev, Vladimir Volynkin, Kate Warner, Xavier Watkins, Rossana Zaru, Hermann Zellner, Alan J. Bridge, Sylvain Poux, Nicole Redaschi, Lucila Aimo, Ghislaine Argoud-Puy, Andrea H. Auchincloss, Kristian B. Axelsen, Parit Bansal, Delphine Baratin, Marie-Claude Blatter, Jerven T. Bolleman, Emmanuel Boutet, Lionel Breuza, Cristina Casals-Casas, Edouard De Castro, Kamal Chikh Echioukh, Elisabeth Coudert, Béatrice A. Cuche, Mikael Doche, Dolnide Dornevil, Anne Estreicher, Maria Livia Famiglietti, Marc Feuermann, Elisabeth Gasteiger, Sebastien Gehant, Vivienne Baillie Gerritsen, Arnaud Gos, Nadine Gruaz-Gumowski, Ursula Hinz, Chantal Hulo, Nevila Hyka-Nouspikel, Florence Jungo, Guillaume Keller, Arnaud Kerhornou, Vicente Lara, Philippe Le Mercier, Damien Lieberherr, Thierry Lombardot, Xavier Martin, Patrick Masson, Anne Morgat, Teresa Batista Neto, Salvo Paesano, Ivo Pedruzzi, Sandrine Pilbout, Lucille Pourcel, Monica Pozzato, Manuela Pruess, Catherine Rivoire, Christian J. A. Sigrist, Karin Sonesson, Andre Stutz, Shyamala Sundaram, Michael Tognolli, Laure Verbregue, Cathy H. Wu, Cecilia N. Arighi, Leslie Arminski, Chuming Chen, Yongxing Chen, John S. Garavelli, Hongzhan Huang, Kati Laiho, Peter B. McGarvey, Darren A. Natale, Karen Ross, C. R. Vinayaka, Qinghua Wang, Yuqi Wang, Lai-Su Yeh, Jian Zhang, Patrick Ruch, Douglas Teodoro

Nucleic Acids Res., 2021

Ontology Clustering with OWL2Vec.

Ashley Ritchie, Jiaoyan Chen, Leyla Jael Castro, Dietrich Rebholz-Schuhmann, Ernesto Jiménez-Ruiz

Proceedings of the Joint Proceedings of the 2nd International Workshop on Deep Learning meets Ontologies and Natural Language Processing (DeepOntoNLP 2021) & 6th International Workshop on Explainable Sentiment Mining and Emotion Detection (X-SENTIMENT 2021) co-located with co-located with 18th Extended Semantic Web Conference 2021, Hersonissos, Greece, June 6th, 2021

Living Lab Evaluation for Life and Social Sciences Search Platforms - LiLAS at CLEF 2021.

Philipp Schaer, Johann Schaible, Leyla Jael Castro

Proceedings of the Advances in Information Retrieval, 2021

Working Towards Understanding the Role of FAIR for Machine Learning.

Daniel S. Katz, Fotis E. Psomopoulos, Leyla Jael Castro

Proceedings of the DaMaLOS, 2021

Overview of LiLAS 2021 - Living Labs for Academic Search.

Philipp Schaer, Timo Breuer, Leyla Jael Castro, Benjamin Wolff, Johann Schaible, Narges Tavakolpoursaleh

Proceedings of the Experimental IR Meets Multilinguality, Multimodality, and Interaction, 2021

Overview of LiLAS 2021 - Living Labs for Academic Search (Extended Overview).

Philipp Schaer, Timo Breuer, Leyla Jael Castro, Benjamin Wolff, Johann Schaible, Narges Tavakolpoursaleh

Proceedings of the Working Notes of CLEF 2021 - Conference and Labs of the Evaluation Forum, Bucharest, Romania, September 21st - to, 2021

2020

Ten simple rules for making training materials FAIR.

Leyla J. García, Bérénice Batut, Melissa L. Burke, Mateusz Kuzak, Fotis E. Psomopoulos, Ricardo Arcila, Teresa K. Attwood, Niall Beard, Denise Carvalho-Silva, Alexandros C. Dimopoulos, Victoria Dominguez Del Angel, Michel Dumontier, Kim T. Gurwitz, Roland Krause, Peter McQuilton, Loredana Le Pera, Sarah L. Morgan, Päivi Rauste, Allegra Via, Pascal Kahlem, Gabriella Rustici, Celia W. G. van Gelder, Patricia M. Palagi

PLoS Comput. Biol., 2020

Ten simple rules to run a successful BioHackathon.

Leyla J. García, Erick Antezana, Alexander García Castro, Evan Bolton, Rafael C. Jiménez, Pjotr Prins, Juan M. Banda, Toshiaki Katayama

PLoS Comput. Biol., 2020

The ELIXIR Human Copy Number Variations Community: building bioinformatics infrastructure for research.

David Salgado, Irina M. Armean, Michael Baudis, Sergi Beltran, Salvador Capella-Gutiérrez, Denise Carvalho-Silva, Victoria Dominguez Del Angel, Joaquín Dopazo, Laura I. Furlong, Bo Gao, Leyla Jael García Castro, Dietlind Gerloff, Ivo Gut, Attila Gyenesei, Nina Habermann, John M. Hancock, Marc Hanauer, Eivind Hovig, Lennart F. Johansson, Thomas Keane, Jan Korbel, Katharina B. Lauer, Steve Laurie, Brane Leskosek, David Lloyd, Tomàs Marquès-Bonet, Hailiang Mei, Katalin Monostory, Janet Piñero, Krzysztof Poterlowicz, Ana Rath, Pubudu Samarakoon, Ferran Sanz, Gary Saunders, Daoud Sie, Morris A. Swertz, Kirill Tsukanov, Alfonso Valencia, Marko Vidak, Cristina Yenyxe González, Bauke Ylstra, Christophe Béroud

F1000Research, 2020

39 Hints to Facilitate the Use of Semantics for Data on Agriculture and Nutrition.

Caterina Caracciolo, Sophie Aubin, Clément Jonquet, Emna Amdouni, Romain David, Leyla J. García, Brandon Whitehead, Catherine Roussey, Armando Stellato, Ferdinando Villa

Data Sci. J., 2020

Towards FAIR principles for research software.

Anna-Lena Lamprecht, Leyla J. García, Mateusz Kuzak, Carlos Martinez-Ortiz, Ricardo Arcila, Eva Martin Del Pico, Victoria Dominguez Del Angel, Stephanie van de Sandt, Jon C. Ison, Paula Andrea Martínez, Peter McQuilton, Alfonso Valencia, Jennifer L. Harrow, Fotis E. Psomopoulos, Josep Lluis Gelpí, Neil P. Chue Hong, Carole A. Goble, Salvador Capella-Gutiérrez

Data Sci., 2020

GlyGen data model and processing workflow.

Robel Y. Kahsay, Jeet Vora, Rahi Navelkar, Reza Mousavi, Brian C. Fochtman, Xavier Holmes, Nagarajan Pattabiraman, René Ranzinger, Rupali Mahadik, Tatiana Williamson, Sujeet Kulkarni, Gaurav Agarwal, Maria Jesus Martin, Preethi Vasudev, Leyla J. García, Nathan Edwards, Wenjin Zhang, Darren A. Natale, Karen Ross, Kiyoko F. Aoki-Kinoshita, Matthew P. Campbell, William S. York, Raja Mazumder

Bioinform., 2020

Software as a first-class citizen in research.

Leyla J. García, Michelle Barker, Neil P. Chue Hong, Fotis E. Psomopoulos, Jennifer L. Harrow, Daniel S. Katz, Mateusz Kuzak, Paula Andrea Martínez, Allegra Via

Proceedings of the DaMaLOS, 2020

Towards semantic representation of machine-actionable Data Management Plans.

João Cardoso, Leyla J. García, Fajar J. Ekaputra, Marie C. Jacquemot, Tomasz Miksa, José Borbinha

Proceedings of the DaMaLOS, 2020

Overview of LiLAS 2020 - Living Labs for Academic Search Workshop Lab (extended abstract).

Philipp Schaer, Johann Schaible, Leyla Jael García Castro

Proceedings of the Working Notes of CLEF 2020, 2020

Overview of LiLAS 2020 - Living Labs for Academic Search.

Philipp Schaer, Johann Schaible, Leyla Jael García Castro

Proceedings of the Experimental IR Meets Multilinguality, Multimodality, and Interaction, 2020

2019

BioHackathon series in 2013 and 2014: improvements of semantic interoperability in life science data and services.

Toshiaki Katayama, Shuichi Kawashima, Gos Micklem, Shin Kawano, Jin-Dong Kim, Simon Kocbek, Shinobu Okamoto, Yue Wang, Hongyan Wu, Atsuko Yamaguchi, Yasunori Yamamoto, Erick Antezana, Kiyoko F. Aoki-Kinoshita, Kazuharu Arakawa, Masaki Banno, Joachim Baran, Jerven T. Bolleman, Raoul Jean Pierre Bonnal, Hidemasa Bono, Jesualdo Tomás Fernández-Breis, Robert M. Buels, Matthew P. Campbell, Hirokazu Chiba, Peter J. A. Cock, Kevin Bretonnel Cohen, Michel Dumontier, Takatomo Fujisawa, Toyofumi Fujiwara, Leyla J. García, Pascale Gaudet, Emi Hattori, Robert Hoehndorf, Kotone Itaya, Maori Ito, Daniel Jamieson, Simon Jupp, Nick S. Juty, Alex Kalderimis, Fumihiro Kato, Hideya Kawaji, Takeshi Kawashima, Akira R. Kinjo, Yusuke Komiyama, Masaaki Kotera, Tatsuya Kushida, James Malone, Masaaki Matsubara, Satoshi Mizuno, Sayaka Mizutani, Hiroshi Mori, Yuki Moriya, Katsuhiko Murakami, Takeru Nakazato, Hiroyo Nishide, Yosuke Nishimura, Soichi Ogishima, Tazro Ohta, Shujiro Okuda, Hiromasa Ono, Yasset Pérez-Riverol, Daisuke Shinmachi, Andrea Splendiani, Francesco Strozzi, Shinya Suzuki, Junichi Takehara, Mark Thompson, Toshiaki Tokimatsu, Ikuo Uchiyama, Karin Verspoor, Mark D. Wilkinson, Sarala M. Wimalaratne, Issaku Yamada, Nozomi Yamamoto, Masayuki Yarimizu, Shoko Kawamoto, Toshihisa Takagi

F1000Research, 2019

2018

Ten simple rules for delivering live distance training in bioinformatics across the globe using webinars.

Denise Carvalho-Silva, Leyla J. García, Sarah L. Morgan, Cath Brooksbank, Ian Dunham

PLoS Comput. Biol., 2018

2017

Biotea-Biolinks: A semantic infrastructure for exploring and analyzing scientific publications.

Leyla Jael Castro

PhD thesis, 2017

Four simple recommendations to encourage best practices in research software.

Rafael C. Jiménez, Mateusz Kuzak, Monther Alhamdoosh, Michelle Barker, Bérénice Batut, Mikael Borg, Salvador Capella-Gutiérrez, Neil P. Chue Hong, Martin Cook, Manuel Corpas, Madison Flannery, Leyla J. García, Josep Lluis Gelpí, Simon L. Gladman, Carole A. Goble, Montserrat González Ferreiro, Alejandra N. González-Beltrán, Philippa C. Griffin, Björn A. Grüning, Jonas Hagberg, Petr Holub, Rob W. W. Hooft, Jon C. Ison, Daniel S. Katz, Brane Leskosek, Federico López-Gómez, Luis J. Oliveira, David Mellor, Rowland Mosbergen, Nicola J. Mulder, Yasset Pérez-Riverol, Robert Pergl, Horst Pichler, Bernard J. Pope, Ferran Sanz, Maria Victoria Schneider, Victoria Stodden, Radoslaw Suchecki, Radka Svobodová Vareková, Harry-Anton Talvik, Ilian T. Todorov, Andrew E. Treloar, Sonika Tyagi, Maarten van Gompel, Daniel Vaughan, Allegra Via, Xiaochuan Wang, Nathan S. Watson-Haigh, Steve Crouch

F1000Research, 2017

ProtVista: visualization of protein sequence annotations.

Xavier Watkins, Leyla J. García, Sangya Pundir, Maria Jesus Martin, The UniProt Consortium

Bioinform., 2017

Bioschemas: schema.org for the Life Sciences.

Leyla J. García, Olga L. Giraldo, Alexander García Castro, Michel Dumontier, Bioschemas Community

Proceedings of the 10th International Conference on Semantic Web Applications and Tools for Health Care and Life Sciences (SWAT4LS 2017), 2017

2016

A Graph-based Taxonomy RESTful Data Service.

Leyla J. García, Leonardo Gonzales, Maria Jesus Martin

Proceedings of the 9th International Conference Semantic Web Applications and Tools for Life Sciences, 2016

2015

In the pursuit of a semantic similarity metric based on UMLS annotations for articles in PubMed Central Open Access.

Leyla Jael García Castro, Rafael Berlanga Llavori, Alexander García Castro

J. Biomed. Informatics, 2015

Building Domain Ontologies Out of Folksonomies and Linked Data.

Andrés García-Silva, Leyla Jael García Castro, Alexander García Castro, Óscar Corcho

Int. J. Artif. Intell. Tools, 2015

2014

BioJS: an open source standard for biological visualisation - its status in 2014.

Manuel Corpas, Rafael C. Jiménez, Seth Carbon, Alexander García Castro, Leyla Jael Castro, Tatyana Goldberg, John Gómez, Alex Kalderimis, Suzanna E. Lewis, Ian Mulvany, Aleksandra Pawlik, Francis Rowland, Gustavo A. Salazar, Fabian Schreiber, Ian Sillitoe, William Spooner, Anil S. Thanki, Jose M. Villaveces, Guy Yachdav, Henning Hermjakob

F1000Research, 2014

The EBI RDF platform: linked open data for the life sciences.

Simon Jupp, James Malone, Jerven T. Bolleman, Marco Brandizi, Mark Davies, Leyla J. García, Anna Gaulton, Sebastien Gehant, Camille Laibe, Nicole Redaschi, Sarala M. Wimalaratne, Maria Jesus Martin, Nicolas Le Novère, Helen E. Parkinson, Ewan Birney, Andrew M. Jenkinson

Bioinform., 2014

Social Tags and Linked Data for Ontology Development: A Case Study in the Financial Domain.

Andrés García-Silva, Leyla Jael García Castro, Alexander García Castro, Óscar Corcho

Proceedings of the 4th International Conference on Web Intelligence, 2014

2013

Biotea: RDFizing PubMed Central in support for the paper as an interface to the Web of Data.

Leyla Jael García Castro, Casey McLaughlin, Alexander García Castro

J. Biomed. Semant., 2013

BioJS: an open source JavaScript framework for biological data visualization.

John Gómez, Leyla J. García, Gustavo A. Salazar, Jose M. Villaveces, Swanand P. Gore, Alexander García Castro, Maria Jesus Martin, Guillaume Launay, Rafael Alcántara, Noemi del-Toro, Marine Dumousseau, Sandra E. Orchard, Sameer Velankar, Henning Hermjakob, Chenggong Zong, Peipei Ping, Manuel Corpas, Rafael C. Jiménez

Bioinform., 2013

Connections across Scientific Publications based on Semantic Annotations.

Leyla Jael García Castro, Rafael Berlanga Llavori, Dietrich Rebholz-Schuhmann, Alexander García Castro

Proceedings of the 3rd Workshop on Semantic Publishing, 2013

2012

Conceptual Exploration of Documents and Digital Libraries in the Biomedical Domain.

Leyla Jael García Castro, Alexander García Castro, John Gómez

Proceedings of the 5th International Workshop on Semantic Web Applications and Tools for Life Sciences, 2012

Using annotations to model discourse: an extension to the Annotation Ontology.

Leyla Jael García Castro, Olga L. Giraldo, Alexander García Castro

Proceedings of the 2nd Workshop on Semantic Publishing, 2012

2011

An open annotation ontology for science on web 3.0.

Paolo Ciccarese, Marco Ocana, Leyla Jael García Castro, Sudeshna Das, Tim Clark

J. Biomed. Semant., 2011

Dasty3, a WEB framework for DAS.

Jose M. Villaveces, Rafael C. Jiménez, Leyla J. García, Gustavo A. Salazar, Bernat Gel, Nicola J. Mulder, Maria Jesus Martin, Alexander García Castro, Henning Hermjakob

Bioinform., 2011

A translational model for representing research articles.

Alexander García Castro, Leyla Jael García Castro

Proceedings of the 4th International Workshop on Semantic Web Applications and Tools for the Life Sciences, 2011

Tagsty: augmented knowledge from community-based annotations on protein sequences.

Leyla Jael García Castro, Alexander García Castro

Proceedings of the 4th International Workshop on Semantic Web Applications and Tools for the Life Sciences, 2011

Annotating Experimental Records Using Ontologies.

Alexander García Castro, Olga L. Giraldo, Leyla J. García

Proceedings of the 2nd International Conference on Biomedical Ontology, 2011

2010

Developing Ontologies within Decentralised Settings.

Alexander García Castro, Kieran O'Neill, Leyla Jael García Castro, Phillip W. Lord, Robert Stevens, Óscar Corcho, Frank Gibson

Proceedings of the Semantic e-Science, 2010

Semantic Web and Social Web heading towards Living Documents in the Life Sciences.

Alexander García Castro, Alberto Labarga, Leyla J. García, Olga L. Giraldo, César Montaña, John A. Bateman

J. Web Semant., 2010

Using the Annotation Ontology in Semantic Digital Libraries.

Leyla Jael García Castro, Olga L. Giraldo, Alexander García Castro

Proceedings of the ISWC 2010 Posters & Demonstrations Track: Collected Abstracts, 2010

TagSorting: A Tagging Environment for Collaboratively Building Ontologies.

Leyla Jael García Castro, Martin Hepp, Alexander García Castro

Proceedings of the Knowledge Engineering and Management by the Masses, 2010

2009

Tags4Tags: Using Tagging to Consolidate Tags.

Leyla Jael García Castro, Martin Hepp, Alexander García Castro

Proceedings of the Database and Expert Systems Applications, 20th International Conference, 2009

Annotating Atomic Components of Papers in Digital Libraries: The Semantic and Social Web Heading towards a Living Document Supporting eSciences.

Alexander García Castro, Leyla Jael García Castro, Alberto Labarga, Olga L. Giraldo, César Montaña, Kieran O'Neill, John A. Bateman

Proceedings of the Database and Expert Systems Applications, 20th International Conference, 2009

2008

CMAPS Supporting the Development of OWL Ontologies.

Alexander García Castro, Angela Norena, Andres Betancourt, Leyla J. García

Proceedings of the Poster and Demonstration Session at the 7th International Semantic Web Conference (ISWC2008), 2008

2005

Workflows in bioinformatics: meta-analysis and prototype implementation of a workflow generator.

Alexander García Castro, Samuel Thoraval, Leyla J. García, Mark A. Ragan

BMC Bioinform., 2005