Levi Waldron

According to our database, Levi Waldron authored at least 18 papers between 2011 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2023

Curated single cell multimodal landmark datasets for R/Bioconductor.

Kelly B. Eckenrode, Dario Righelli, Marcel Ramos, Ricard Argelaguet, Christophe Vanderaa, Ludwig Geistlinger, Aedín C. Culhane, Laurent Gatto, Vincent J. Carey, Martin Morgan, Davide Risso, Levi Waldron

PLoS Comput. Biol., 2023

Evaluation of software impact designed for biomedical research: Are we measuring what's meaningful?

Awan Afiaz, Andrey Ivanov, John Chamberlin, David Hanauer, Candace Savonen, Mary J. Goldman, Martin Morgan, Michael Reich, Alexander Getka, Aaron Holmes, Sarthak Pati, Dan Knight, Paul C. Boutros, Spyridon Bakas, J. Gregory Caporaso, Guilherme Del Fiol, Harry Hochheiser, Brian Haas, Patrick D. Schloss, James A. Eddy, Jake Albrecht, Andrey Fedorov, Levi Waldron, Ava M. Hoffman, Richard L. Bradshaw, Jeffrey T. Leek, Carrie Wright

CoRR, 2023

2021

Multivariable association discovery in population-scale meta-omics studies.

Himel Mallick, Ali Rahnavard, Lauren J. McIver, Siyuan Ma, Yancong Zhang, Long H. Nguyen, Timothy L. Tickle, George Weingart, Boyu Ren, Emma H. Schwager, Suvo Chatterjee, Kelsey N. Thompson, Jeremy E. Wilkinson, Ayshwarya Subramanian, Yiren Lu, Levi Waldron, Joseph N. Paulson, Eric A. Franzosa, Héctor Corrada Bravo, Curtis Huttenhower

PLoS Comput. Biol., 2021

SIMON: Open-Source Knowledge Discovery Platform.

Adriana Tomic, Ivan Tomic, Levi Waldron, Ludwig Geistlinger, Max Kuhn, Rachel L. Spreng, Lindsay C. Dahora, Kelly E. Seaton, Georgia D. Tomaras, Jennifer Hill, Niharika A. Duggal, Ross D. Pollock, Norman R. Lazarus, Stephen D. R. Harridge, Janet M. Lord, Purvesh Khatri, Andrew J. Pollard, Mark M. Davis

Patterns, 2021

Toward a gold standard for benchmarking gene set enrichment analysis.

Ludwig Geistlinger, Gergely Csaba, Mara Santarelli, Marcel Ramos, Lucas Schiffer, Nitesh Turaga, Charity W. Law, Sean Davis, Vincent J. Carey, Martin Morgan, Ralf Zimmer, Levi Waldron

Briefings Bioinform., 2021

2020

CNVRanger: association analysis of CNVs with gene expression and quantitative phenotypes.

Vinícius da Silva, Marcel Ramos, Martien Groenen, Richard Crooijmans, Anna Johansson, Luciana C. A. Regitano, Luiz Coutinho, Ralf Zimmer, Levi Waldron, Ludwig Geistlinger

Bioinform., 2020

2019

restfulSE: A semantically rich interface for cloud-scale genomics with Bioconductor.

Shweta Gopaulakrishnan, Samuela Pollack, BJ Stubbs, Hervé Pagès, John Readey, Sean Davis, Levi Waldron, Martin Morgan, Vincent J. Carey

F1000Research, 2019

2018

Orchestrating a community-developed computational workshop and accompanying training materials.

Sean Davis, Marcel Ramos, Lori A. Shepherd, Nitesh Turaga, Ludwig Geistlinger, Martin T. Morgan, Benjamin Haibe-Kains, Levi Waldron

F1000Research, 2018

bioBakery: a meta'omic analysis environment.

Lauren J. McIver, Galeb Abu-Ali, Eric A. Franzosa, Randall Schwager, Xochitl C. Morgan, Levi Waldron, Nicola Segata, Curtis Huttenhower

Bioinform., 2018

2016

Control of Gene Expression by RNA Binding Protein Action on Alternative Translation Initiation Sites.

Angela Re, Levi Waldron, Alessandro Quattrone

PLoS Comput. Biol., 2016

Machine Learning Meta-analysis of Large Metagenomic Datasets: Tools and Biological Insights.

Edoardo Pasolli, Duy Tin Truong, Faizan Malik, Levi Waldron, Nicola Segata

PLoS Comput. Biol., 2016

Public data and open source tools for multi-assay genomic investigation of disease.

Lavanya Kannan, Marcel Ramos, Angela Re, Nehme Hachem, Zhaleh Safikhani, Deena M. A. Gendoo, Sean Davis, David Gomez-Cabrero, Robert Castelo, Kasper D. Hansen, Vincent J. Carey, Martin Morgan, Aedín C. Culhane, Benjamin Haibe-Kains, Levi Waldron

Briefings Bioinform., 2016

Meta-Analysis in Gene Expression Studies.

Levi Waldron, Markus Riester

Proceedings of the Statistical Genomics - Methods and Protocols, 2016

2014

Más-o-menos: a simple sign averaging method for discrimination in genomic data analysis.

Sihai Dave Zhao, Giovanni Parmigiani, Curtis Huttenhower, Levi Waldron

Bioinform., 2014

Cross-study validation for the assessment of prediction algorithms.

Christoph Bernau, Markus Riester, Anne-Laure Boulesteix, Giovanni Parmigiani, Curtis Huttenhower, Levi Waldron, Lorenzo Trippa

Bioinform., 2014

2013

A Guide to Enterotypes across the Human Body: Meta-Analysis of Microbial Community Structures in Human Microbiome Datasets.

Omry Koren, Dan Knight, Antonio González, Levi Waldron, Nicola Segata, Rob Knight, Curtis Huttenhower, Ruth E. Ley

PLoS Comput. Biol., 2013

curatedOvarianData: clinically annotated data for the ovarian cancer transcriptome.

Benjamin Frederick Ganzfried, Markus Riester, Benjamin Haibe-Kains, Thomas Risch, Svitlana Tyekucheva, Ina Jazic, Xin Victoria Wang, Mahnaz Ahmadifar, Michael J. Birrer, Giovanni Parmigiani, Curtis Huttenhower, Levi Waldron

Database J. Biol. Databases Curation, 2013

2011

Optimized application of penalized regression methods to diverse genomic data.

Levi Waldron, Melania Pintilie, Ming-Sound Tsao, Frances A. Shepherd, Curtis Huttenhower, Igor Jurisica

Bioinform., 2011