Leonardo Collado-Torres

According to our database, Leonardo Collado-Torres authored at least 10 papers between 2011 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

BiocMAP: a Bioconductor-friendly, GPU-accelerated pipeline for bisulfite-sequencing data.

Nicholas J. Eagles, Richard Wilton, Andrew E. Jaffe, Leonardo Collado-Torres

BMC Bioinform., December, 2023

IntroVerse: a comprehensive database of introns across human tissues.

Sonia García-Ruíz, Emil K. Gustavsson, David Zhang, Regina H. Reynolds, Zhongbo Chen, Aine Fairbrother-Browne, Ana Luisa Gil-Martínez, Juan A. Botía, Leonardo Collado-Torres, Mina Ryten

Nucleic Acids Res., January, 2023

2022

SpatialExperiment: infrastructure for spatially-resolved transcriptomics data in R using Bioconductor.

Dario Righelli, Lukas M. Weber, Helena L. Crowell, Brenda Pardo, Leonardo Collado-Torres, Shila Ghazanfar, Aaron T. L. Lun, Stephanie C. Hicks, Davide Risso

Bioinform., 2022

2021

Correction to: SPEAQeasy: a scalable pipeline for expression analysis and quantification for R/bioconductor‑powered RNA‑seq analyses.

Nicholas J. Eagles, Emily E. Burke, Jacob Leonard, Brianna K. Barry, Joshua M. Stolz, Louise Huuki, BaDoi N. Phan, Violeta Larios Serrato, Everardo Gutiérrez-Millán, Israel Aguilar-Ordoñez, Andrew E. Jaffe, Leonardo Collado-Torres

BMC Bioinform., 2021

SPEAQeasy: a scalable pipeline for expression analysis and quantification for R/bioconductor-powered RNA-seq analyses.

Nicholas J. Eagles, Emily E. Burke, Jacob Leonard, Brianna K. Barry, Joshua M. Stolz, Louise Huuki, BaDoi N. Phan, Violeta Larios Serrato, Everardo Gutiérrez-Millán, Israel Aguilar-Ordoñez, Andrew E. Jaffe, Leonardo Collado-Torres

BMC Bioinform., 2021

Megadepth: efficient coverage quantification for BigWigs and BAMs.

Christopher Wilks, Omar Ahmed, Daniel N. Baker, David Zhang, Leonardo Collado-Torres, Ben Langmead

Bioinform., 2021

2020

Programmatic access to bacterial regulatory networks with regutools.

Joselyn Chávez, Carmina Barberena-Jonas, Jesus E. Sotelo-Fonseca, José Alquicira-Hernández, Heladia Salgado, Leonardo Collado-Torres, Alejandro Reyes

Bioinform., 2020

2017

Rail-RNA: scalable analysis of RNA-seq splicing and coverage.

Abhinav Nellore, Leonardo Collado-Torres, Andrew E. Jaffe, José Alquicira-Hernández, Christopher Wilks, Jacob Pritt, James Morton, Jeffrey T. Leek, Ben Langmead

Bioinform., 2017

2015

regionReport: Interactive reports for region-based analyses.

Leonardo Collado-Torres, Andrew E. Jaffe, Jeffrey T. Leek

F1000Research, 2015

2011

RegulonDB version 7.0: transcriptional regulation of <i>Escherichia coli</i> K-12 integrated within genetic sensory response units (Gensor Units).

Socorro Gama-Castro, Heladia Salgado, Martín Peralta-Gil, Alberto Santos-Zavaleta, Luis Muñiz-Rascado, Hilda Solano-Lira, Verónica Jiménez-Jacinto, Verena Weiss, Jair S. García-Sotelo, Alejandra López-Fuentes, Liliana Porrón-Sotelo, Shirley Alquicira-Hernández, Alejandra Medina-Rivera, Irma Martínez-Flores, Kevin Alquicira-Hernández, Ruth Martínez-Adame, César Bonavides-Martínez, Juan Miranda-Ríos, Araceli M. Huerta, Alfredo Mendoza-Vargas, Leonardo Collado-Torres, Blanca Taboada, Leticia Vega-Alvarado, Maricela Olvera, Leticia Olvera, Ricardo Grande, Enrique Morett, Julio Collado-Vides

Nucleic Acids Res., 2011