Lena Simine

According to our database, Lena Simine authored at least 6 papers between 2021 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

DeltaGzip: Computing Biopolymer-Ligand Binding Affinity via Kolmogorov Complexity and Lossless Compression.

Tao Liu, Lena Simine

J. Chem. Inf. Model., 2024

2022

E2EDNA 2.0: Python Pipeline for Simulating DNA Aptamers with Ligands.

Michael Kilgour, Tao Liu, Ilya S. Dementyev, Lena Simine

J. Open Source Softw., 2022

Inside the black box: A physical basis for the effectiveness of deep generative models of amorphous materials.

Michael Kilgour, Lena Simine

J. Comput. Phys., 2022

Diversifying Design of Nucleic Acid Aptamers Using Unsupervised Machine Learning.

Siba Moussa, Michael Kilgour, Clara Jans, Alex Hernández-García, Miroslava Cuperlovic-Culf, Yoshua Bengio, Lena Simine

CoRR, 2022

Biological Sequence Design with GFlowNets.

Moksh Jain, Emmanuel Bengio, Alex Hernández-García, Jarrid Rector-Brooks, Bonaventure F. P. Dossou, Chanakya Ajit Ekbote, Jie Fu, Tianyu Zhang, Michael Kilgour, Dinghuai Zhang, Lena Simine, Payel Das, Yoshua Bengio

Proceedings of the International Conference on Machine Learning, 2022

2021

E2EDNA: Simulation Protocol for DNA Aptamers with Ligands.

Michael Kilgour, Tao Liu, Brandon D. Walker, Pengyu Y. Ren, Lena Simine

J. Chem. Inf. Model., 2021