Leming Shi
Orcid: 0000-0002-2981-4150
According to our database1,
Leming Shi
authored at least 38 papers
between 1997 and 2023.
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Bibliography
2023
Patient Assessment and Therapy Planning Based on Homologous Recombination Repair Deficiency.
Genom. Proteom. Bioinform., 2023
2019
PreMedKB: an integrated precision medicine knowledgebase for interpreting relationships between diseases, genes, variants and drugs.
Nucleic Acids Res., 2019
Correction to: Similarities and differences between variants called with human reference genome HG19 or HG38.
BMC Bioinform., 2019
Similarities and differences between variants called with human reference genome HG19 or HG38.
BMC Bioinform., 2019
2015
Understanding and predicting binding between human leukocyte antigens (HLAs) and peptides by network analysis.
BMC Bioinform., December, 2015
2014
<i>DDI-CPI</i>, a server that predicts drug-drug interactions through implementing the chemical-protein interactome.
Nucleic Acids Res., 2014
2013
Int. J. Bioinform. Res. Appl., 2013
Good practice guidelines for biomarker discovery from array data: a case study for breast cancer prognosis.
BMC Syst. Biol., 2013
2012
Proceedings of the 2012 IEEE International Conference on Bioinformatics and Biomedicine, 2012
2011
Exploring Off-Targets and Off-Systems for Adverse Drug Reactions via Chemical-Protein Interactome - Clozapine-Induced Agranulocytosis as a Case Study.
PLoS Comput. Biol., 2011
DRAR-CPI: a server for identifying drug repositioning potential and adverse drug reactions via the chemical-protein interactome.
Nucleic Acids Res., 2011
Selecting a single model or combining multiple models for microarray-based classifier development? - A comparative analysis based on large and diverse datasets generated from the MAQC-II project.
BMC Bioinform., 2011
The MicroArray Quality Control (MAQC) Project and Cross-Platform Analysis of Microarray Data.
Proceedings of the Handbook of Statistical Bioinformatics., 2011
2010
Evaluation of gene expression data generated from expired Affymetrix GeneChip<sup>®</sup> microarrays using MAQC reference RNA samples.
BMC Bioinform., 2010
BMC Bioinform., 2010
2009
The Accurate Prediction of Protein Family from Amino Acid Sequence by Measuring Features of Sequence Fragments.
J. Comput. Biol., 2009
Microarray platform consistency is revealed by biologically functional analysis of gene expression profiles.
BMC Bioinform., 2009
2008
Mold<sup>2</sup>, Molecular Descriptors from 2D Structures for Chemoinformatics and Toxicoinformatics.
J. Chem. Inf. Model., 2008
Very Important Pool (VIP) genes - an application for microarray-based molecular signatures.
BMC Bioinform., 2008
The balance of reproducibility, sensitivity, and specificity of lists of differentially expressed genes in microarray studies.
BMC Bioinform., 2008
Assessing batch effects of genotype calling algorithm BRLMM for the Affymetrix GeneChip Human Mapping 500 K array set using 270 HapMap samples.
BMC Bioinform., 2008
2006
Analysis of gene expression changes in relation to toxicity and tumorigenesis in the livers of Big Blue transgenic rats fed comfrey (<i>Symphytum officinale</i>).
BMC Bioinform., 2006
Improvement in the Reproducibility and Accuracy of DNA Microarray Quantification by Optimizing Hybridization Conditions.
BMC Bioinform., 2006
Differential gene expression in mouse primary hepatocytes exposed to the peroxisome proliferator-activated receptor alpha agonists.
BMC Bioinform., 2006
Gene Expression Profiles Distinguish the Carcinogenic Effects of Aristolochic Acid in Target (Kidney) and Non-target (Liver) Tissues in Rats.
BMC Bioinform., 2006
Integrating time-course microarray gene expression profiles with cytotoxicity for identification of biomarkers in primary rat hepatocytes exposed to cadmium.
Bioinform., 2006
2005
A microarray study of MPP<sup>+</sup>-treated PC12 Cells: Mechanisms of toxicity (MOT) analysis using bioinformatics tools.
BMC Bioinform., 2005
BMC Bioinform., 2005
Cross-platform comparability of microarray technology: Intra-platform consistency and appropriate data analysis procedures are essential.
BMC Bioinform., 2005
Quality control and quality assessment of data from surface-enhanced laser desorption/ionization (SELDI) time-of flight (TOF) mass spectrometry (MS).
BMC Bioinform., 2005
Bioinformatics approaches for cross-species liver cancer analysis based on microarray gene expression profiling.
BMC Bioinform., 2005
2004
J. Chem. Inf. Model., 2004
Multi-class tumor classification by discriminant partial least squares using microarray gene expression data and assessment of classification models.
Comput. Biol. Chem., 2004
2001
2000
J. Chem. Inf. Comput. Sci., 2000
1998
Mining the NCI Anticancer Drug Discovery Databases: Genetic Function Approximation for the QSAR Study of Anticancer Ellipticine Analogues.
J. Chem. Inf. Comput. Sci., 1998
1997
Proceedings of International Conference on Neural Networks (ICNN'97), 1997