Lee S. Katz

According to our database, Lee S. Katz authored at least 9 papers between 2008 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

Fasten: a toolkit for streaming operations on fastq files.

Lee S. Katz, John Phan, Henk C. den Bakker

J. Open Source Softw., February, 2024

primerForge: a Python program for identifying primer pairs capable of distinguishing groups of genomes from each other.

Joseph S. Wirth, Lee S. Katz, Grant M. Williams, Jessica C. Chen

J. Open Source Softw., 2024

2021

SneakerNet: A modular quality assurance and quality check workflow for primary genomic and metagenomic read data.

Taylor Griswold, Curtis Kapsak, Jessica C. Chen, Henk C. den Bakker, Grant Williams, Alyssa Kelley, Eshaw Vidyaprakash, Lee S. Katz

J. Open Source Softw., 2021

Sepia, a taxonomy oriented read classifier in Rust.

Henk C. den Bakker, Lee S. Katz

J. Open Source Softw., 2021

2019

Mashtree: a rapid comparison of whole genome sequence files.

Lee S. Katz, Taylor Griswold, Shatavia Morrison, Jason Caravas, Shaokang Zhang, Henk C. den Bakker, Xiangyu Deng, Heather Carleton

J. Open Source Softw., 2019

2011

<i>Neisseria</i> Base: a comparative genomics database for <i>Neisseria meningitidis</i>.

Lee S. Katz, Jay C. Humphrey, Andrew B. Conley, Viswateja Nelakuditi, Andrey Kislyuk, Sonia Agrawal, Pushkala Jayaraman, Brian H. Harcourt, Melissa A. Olsen-Rasmussen, Michael Frace, Nitya V. Sharma, Leonard W. Mayer, I. King Jordan

Database J. Biol. Databases Curation, 2011

2010

A computational genomics pipeline for prokaryotic sequencing projects.

Andrey Kislyuk, Lee S. Katz, Sonia Agrawal, Matthew S. Hagen, Andrew B. Conley, Pushkala Jayaraman, Viswateja Nelakuditi, Jay C. Humphrey, Scott A. Sammons, Dhwani Govil, Raydel D. Mair, Kathleen M. Tatti, Maria L. Tondella, Brian H. Harcourt, Leonard W. Mayer, I. King Jordan

Bioinform., 2010

2009

Meningococcus genome informatics platform: a system for analyzing multilocus sequence typing data.

Lee S. Katz, Chris R. Bolen, Brian H. Harcourt, Susanna Schmink, Xin Wang, Andrey Kislyuk, Robert T. Taylor, Leonard W. Mayer, I. King Jordan

Nucleic Acids Res., 2009

2008

Natural selection governs local, but not global, evolutionary gene coexpression networks in Caenorhabditis elegans.

I. King Jordan, Lee S. Katz, Dee R. Denver, J. Todd Streelman

BMC Syst. Biol., 2008