Lee Ann McCue

According to our database, Lee Ann McCue authored at least 14 papers between 1998 and 2021.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2021

Challenges in Bioinformatics Workflows for Processing Microbiome Omics Data at Scale.

Bin Hu, Shane Canon, Emiley A. Eloe-Fadrosh, Fnu Anubhav, Michal Babinski, Yuri Corilo, Karen Davenport, William D. Duncan, Kjiersten Fagnan, Mark Flynn, Brian Foster, David Hays, Marcel Huntemann, Elais Player Jackson, Julia Kelliher, Po-E Li, Chien-Chi Lo, Douglas Mans, Lee Ann McCue, Nigel Mouncey, Christopher J. Mungall, Paul D. Piehowski, Samuel O. Purvine, Montana Smith, Neha Jacob Varghese, Donald Winston, Yan Xu, Patrick S. G. Chain

Frontiers Bioinform., 2021

Leveraging Ontologies within the National Microbiome Data Collaborative.

William D. Duncan, Faiza Ahmed, Fnu Anubhav, Jeffrey Baumes, Jonathan Beezley, Mark Borkum, Lisa M. Bramer, Shane Canon, Patrick S. G. Chain, Danielle Christianson, Yuri Corilo, Karen Davenport, Brandon Davis, Meghan Drake, Kjiersten Fagnan, Mark Flynn, David Hays, Bin Hu, Marcel Huntemann, Julia Kelliher, Sofya Lebedeva, Po-E Li, Mary Lipton, Chien-Chi Lo, Douglas Mans, Stanton Martin, Lee Ann McCue, David Millard, Kayd Miller, Nigel Mouncey, Paul D. Piehowski, Elais Player Jackson, Anastasiya Prymolenna, Samuel O. Purvine, T. B. K. Reddy, Rachel Richardson, Migun Shakya, Montana Smith, Jagadish Chandrabose Sundaramurthi, Mark A. Miller, Deepak R. Unni, Pajau Vangay, Bruce Wilson, Donald Winston, Elisha M. Wood-Charlson, Yan Xu, Emiley A. Eloe-Fadrosh, Christopher J. Mungall

Proceedings of the International Conference on Biomedical Ontologies 2021 co-located with the Workshop on Ontologies for the Behavioural and Social Sciences (OntoBess 2021) as part of the Bolzano Summer of Knowledge (BOSK 2021), 2021

2020

ftmsRanalysis: An R package for exploratory data analysis and interactive visualization of FT-MS data.

Lisa M. Bramer, Amanda M. White, Kelly G. Stratton, Allison M. Thompson, Daniel Claborne, Kirsten Hofmockel, Lee Ann McCue

PLoS Comput. Biol., 2020

ATLAS: a Snakemake workflow for assembly, annotation, and genomic binning of metagenome sequence data.

Silas Kieser, Joseph Brown, Evgeny M. Zdobnov, Mirko Trajkovski, Lee Ann McCue

BMC Bioinform., 2020

2018

Hundo: a Snakemake workflow for microbial community sequence data.

Joseph Brown, Nicole Zavoshy, Colin J. Brislawn, Lee Ann McCue

PeerJ Prepr., 2018

2017

FQC Dashboard: integrates FastQC results into a web-based, interactive, and extensible FASTQ quality control tool.

Joseph W. Brown, Meg Pirrung, Lee Ann McCue

Bioinform., 2017

2013

SPOCS: software for predicting and visualizing orthology/paralogy relationships among genomes.

Darren S. Curtis, Aaron R. Phillips, Stephen J. Callister, Sean Conlan, Lee Ann McCue

Bioinform., 2013

2009

A Bayesian Integration Model of High-Throughput Proteomics and Metabolomics Data for Improved Early Detection of Microbial Infections.

Bobbie-Jo M. Webb-Robertson, Lee Ann McCue, Nathaniel Beagley, Jason E. McDermott, David S. Wunschel, Susan M. Varnum, Jian Zhi Hu, Nancy G. Isern, Garry W. Buchko, Kathleen McAteer, Joel G. Pounds

Proceedings of the Biocomputing 2009: Proceedings of the Pacific Symposium, 2009

2008

Measuring Global Credibility with Application to Local Sequence Alignment.

Bobbie-Jo M. Webb-Robertson, Lee Ann McCue, Charles E. Lawrence

PLoS Comput. Biol., 2008

2007

The Gibbs Centroid Sampler.

William A. Thompson, Lee Aaron Newberg, Sean Conlan, Lee Ann McCue, Charles E. Lawrence

Nucleic Acids Res., 2007

A phylogenetic Gibbs sampler that yields centroid solutions for <i>cis</i>-regulatory site prediction.

Lee Aaron Newberg, William A. Thompson, Sean Conlan, Thomas M. Smith, Lee Ann McCue, Charles E. Lawrence

Bioinform., 2007

PhyloScan: identification of transcription factor binding sites using cross-species evidence.

C. Steven Carmack, Lee Ann McCue, Lee Aaron Newberg, Charles E. Lawrence

Algorithms Mol. Biol., 2007

2006

Analytics challenge - High-throughput visual analytics biological sciences: turning data into knowledge.

Christopher S. Oehmen, Lee Ann McCue, Joshua N. Adkins, Katrina M. Waters, Tim Carlson, William R. Cannon, Bobbie-Jo M. Webb-Robertson, Douglas J. Baxter, Elena S. Peterson, Mudita Singhal, Anuj R. Shah, Kyle R. Klicker

Proceedings of the ACM/IEEE SC2006 Conference on High Performance Networking and Computing, 2006

1998

Bayesian Protein Family Classifier.

Kunbin Qu, Lee Ann McCue, Charles E. Lawrence

Proceedings of the 6th International Conference on Intelligent Systems for Molecular Biology (ISMB-98), Montréal, Québec, Canada, June 28, 1998