Leandro Martínez

According to our database, Leandro Martínez authored at least 17 papers between 2003 and 2024.

Collaborative distances:

• Dijkstra number of five.
• Erdős number of four.

2024

Helical Content Correlations and Hydration Structures of the Folding Ensemble of the B Domain of Protein A.

Ander Francisco Pereira, Leandro Martínez

J. Chem. Inf. Model., 2024

2022

CellListMap.jl: Efficient and customizable cell list implementation for calculation of pairwise particle properties within a cutoff.

Leandro Martínez

Comput. Phys. Commun., 2022

2021

Wrapping Up Viruses at Multiscale Resolution: Optimizing PACKMOL and SIRAH Execution for Simulating the Zika Virus.

Martín Soñora, Leandro Martínez, Sergio Pantano, Matías R. Machado

J. Chem. Inf. Model., 2021

Structural discrimination analysis for constraint selection in protein modeling.

Guilherme F. Bottino, Allan J. R. Ferrari, Fábio C. Gozzo, Leandro Martínez

Bioinform., 2021

2020

On the Interpretation of subtilisin Carlsberg Time-Resolved Fluorescence Anisotropy Decays: Modeling with Classical Simulations.

Alvaro J. Lopez, Emília P. Barros, Leandro Martínez

J. Chem. Inf. Model., 2020

2019

Statistical force-field for structural modeling using chemical cross-linking/mass spectrometry distance constraints.

Allan J. R. Ferrari, Fábio C. Gozzo, Leandro Martínez

Bioinform., 2019

TopoLink: evaluation of structural models using chemical crosslinking distance constraints.

Allan J. R. Ferrari, Milan A. Clasen, Louise U. Kurt, Paulo C. Carvalho, Fábio C. Gozzo, Leandro Martínez

Bioinform., 2019

2018

Parametric models to compute tryptophan fluorescence wavelengths from classical protein simulations.

Alvaro J. Lopez, Leandro Martínez

J. Comput. Chem., 2018

Enhancing protein fold determination by exploring the complementary information of chemical cross-linking and coevolutionary signals.

Ricardo N. dos Santos, Allan J. R. Ferrari, Hugo C. R. de Jesus, Fábio C. Gozzo, Faruck Morcos, Leandro Martínez

Bioinform., 2018

Prediction of kinetics of protein folding with non-redundant contact information.

Luciano Censoni, Leandro Martínez

Bioinform., 2018

2017

A network model predicts the intensity of residue-protein thermal coupling.

Luciano Censoni, Heloisa dos Santos Muniz, Leandro Martínez

Bioinform., 2017

2011

Inexact restoration method for minimization problems arising in electronic structure calculations.

Juliano B. Francisco, José Mario Martínez, Leandro Martínez, Feodor Pisnitchenko

Comput. Optim. Appl., 2011

2009

Low Order-Value Optimization and applications.

Roberto Andreani, José Mario Martínez, Leandro Martínez, Flávio S. Yano

J. Glob. Optim., 2009

PACKMOL: A package for building initial configurations for molecular dynamics simulations.

Leandro Martínez, Ricardo Andrade, Ernesto G. Birgin, José Mario Martínez

J. Comput. Chem., 2009

2008

Continuous optimization methods for structure alignments.

Roberto Andreani, José Mario Martínez, Leandro Martínez, Flávio S. Yano

Math. Program., 2008

2007

Convergent algorithms for protein structural alignment.

Leandro Martínez, Roberto Andreani, José Mario Martínez

BMC Bioinform., 2007

2003

Packing optimization for automated generation of complex system's initial configurations for molecular dynamics and docking.

José Mario Martínez, Leandro Martínez

J. Comput. Chem., 2003