Layne T. Watson
Orcid: 0000-0003-2009-107XAffiliations:
- Virginia Tech, Blacksburg, Virginia, USA
According to our database1,
Layne T. Watson
authored at least 227 papers
between 1978 and 2024.
Collaborative distances:
Collaborative distances:
Awards
IEEE Fellow
IEEE Fellow 1993, "For contributions to the theory and applications of homotopy algorithms, mathematical software, and nonlinear programming.".
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Online presence:
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On csauthors.net:
Bibliography
2024
ACM Trans. Math. Softw., June, 2024
2023
DeepMicroGen: a generative adversarial network-based method for longitudinal microbiome data imputation.
Bioinform., May, 2023
ACM Trans. Math. Softw., March, 2023
Proceedings of the IEEE Secure Development Conference, 2023
2022
ACM Trans. Math. Softw., 2022
ACM Trans. Auton. Adapt. Syst., 2022
Modeling the temporal dynamics of master regulators and CtrA proteolysis in Caulobacter crescentus cell cycle.
PLoS Comput. Biol., 2022
2021
IEEE Access, 2021
2020
Algorithm 1012: DELAUNAYSPARSE: Interpolation via a Sparse Subset of the Delaunay Triangulation in Medium to High Dimensions.
ACM Trans. Math. Softw., 2020
ACM Trans. Math. Softw., 2020
IEEE Trans. Inf. Forensics Secur., 2020
IEEE Trans. Inf. Forensics Secur., 2020
Int. J. Parallel Emergent Distributed Syst., 2020
Modeling I/O performance variability in high-performance computing systems using mixture distributions.
J. Parallel Distributed Comput., 2020
Prediction of High-Performance Computing Input/Output Variability and Its Application to Optimization for System Configurations.
CoRR, 2020
CoRR, 2020
Multiobjective Optimization of the Variability of the High-Performance Linpack Solver.
Proceedings of the Winter Simulation Conference, 2020
Proceedings of the Spring Simulation Conference, 2020
Robustness of Multidimensional Optimization Outcomes: A General Approach and a Case Study.
Proceedings of the Spring Simulation Conference, 2020
Managing Computationally Expensive Blackbox Multiobjective Optimization Problems Wwth Libensemble.
Proceedings of the Spring Simulation Conference, 2020
2019
MOANA: Modeling and Analyzing I/O Variability in Parallel System Experimental Design.
IEEE Trans. Parallel Distributed Syst., 2019
Quasi-Newton Stochastic Optimization Algorithm for Parameter Estimation of a Stochastic Model of the Budding Yeast Cell Cycle.
IEEE ACM Trans. Comput. Biol. Bioinform., 2019
2018
IEEE Trans. Inf. Forensics Secur., 2018
Simul., 2018
J. Comput. Appl. Math., 2018
Proceedings of the High Performance Computing Symposium, 2018
Predicting system performance by interpolation using a high-dimensional delaunay triangulation.
Proceedings of the High Performance Computing Symposium, 2018
Proceedings of the ACMSE 2018 Conference, Richmond, KY, USA, March 29-31, 2018, 2018
A polynomial time algorithm for multivariate interpolation in arbitrary dimension via the Delaunay triangulation.
Proceedings of the ACMSE 2018 Conference, Richmond, KY, USA, March 29-31, 2018, 2018
2017
Predicting network modules of cell cycle regulators using relative protein abundance statistics.
BMC Syst. Biol., 2017
Proceedings of the 25th High Performance Computing Symposium, Virginia Beach, VA, USA, April 23, 2017
Proceedings of the 25th High Performance Computing Symposium, Virginia Beach, VA, USA, April 23, 2017
2016
Security Optimization of Dynamic Networks with Probabilistic Graph Modeling and Linear Programming.
IEEE Trans. Dependable Secur. Comput., 2016
Optim. Methods Softw., 2016
Efficient implementation of the hybrid method for stochastic simulation of biochemical systems.
CoRR, 2016
Proceedings of the 6th IEEE International Conference on Computational Advances in Bio and Medical Sciences, 2016
2015
Remark on Algorithm 897: VTDIRECT95: Serial and Parallel Codes for the Global Optimization Algorithm DIRECT.
ACM Trans. Math. Softw., 2015
Performance analysis of a novel GPU computation-to-core mapping scheme for robust facet image modeling.
J. Real Time Image Process., 2015
J. Aerosp. Inf. Syst., 2015
A Framework to Analyze the Performance of Load Balancing Schemes for Ensembles of Stochastic Simulations.
Int. J. Parallel Program., 2015
JigCell Run Manager (JC-RM): a tool for managing large sets of biochemical model parametrizations.
BMC Syst. Biol., 2015
BMC Bioinform., 2015
An improved probability-one homotopy map for tracking constrained clustering solutions.
Proceedings of the Symposium on High Performance Computing, 2015
2014
ACM Trans. Intell. Syst. Technol., 2014
Parallel deterministic and stochastic global minimization of functions with very many minima.
Comput. Optim. Appl., 2014
BMC Syst. Biol., 2014
Quantitative prediction of the effect of genetic variation using hidden Markov models.
BMC Bioinform., 2014
Proceedings of the 2014 Summer Simulation Multiconference, 2014
Proceedings of the 2014 Spring Simulation Multiconference, 2014
Proceedings of the 2014 Spring Simulation Multiconference, 2014
Proceedings of the 2014 Spring Simulation Multiconference, 2014
Classification of Mutations by Functional Impact Type: Gain of Function, Loss of Function, and Switch of Function.
Proceedings of the Bioinformatics Research and Applications - 10th International Symposium, 2014
2013
A Globally Convergent Probability-One Homotopy for Linear Programs with Linear Complementarity Constraints.
SIAM J. Optim., 2013
Parallel Comput., 2013
Solving the canonical dual of box- and integer-constrained nonconvex quadratic programs via a deterministic direct search algorithm.
Optim. Methods Softw., 2013
J. Glob. Optim., 2013
Optimization and model reduction in the high dimensional parameter space of a budding yeast cell cycle model.
BMC Syst. Biol., 2013
Using hierarchical data mining to characterize performance of wireless system configurations.
Adv. Eng. Softw., 2013
Proceedings of the 2013 Spring Simulation Multiconference, SpringSim '13, 2013
Proceedings of the International Conference on Computational Science, 2013
Proceedings of the Models and Algorithms for Genome Evolution, 2013
2012
Scatter/Gather Clustering: Flexibly Incorporating User Feedback to Steer Clustering Results.
IEEE Trans. Vis. Comput. Graph., 2012
IEEE Trans. Geosci. Remote. Sens., 2012
Proceedings of the 2012 IEEE International Conference on Bioinformatics and Biomedicine, 2012
2011
Eng. Comput., 2011
Proceedings of the 2011 Spring Simulation Multi-conference, 2011
Proceedings of the 2011 Spring Simulation Multi-conference, 2011
Proceedings of the 2011 Spring Simulation Multi-conference, 2011
Proceedings of the 49th Annual Southeast Regional Conference, 2011
2010
Algorithm 905: Modified Shepard Algorithm for Interpolation of Scattered Multivariate Data.
ACM Trans. Math. Softw., 2010
Int. J. Parallel Emergent Distributed Syst., 2010
Comput. Math. Appl., 2010
Proceedings of the 2010 Winter Simulation Conference, 2010
Proceedings of the 2010 Spring Simulation Multiconference, 2010
Stiffness detection and reduction in discrete stochastic simulation of biochemical systems.
Proceedings of the 2010 Spring Simulation Multiconference, 2010
Proceedings of the 2010 Spring Simulation Multiconference, 2010
A Novel Computation-to-core Mapping Scheme for Robust Facet Image Modeling on GPUs.
Proceedings of the International Conference on Parallel and Distributed Processing Techniques and Applications, 2010
Proceedings of the 16th ACM SIGKDD International Conference on Knowledge Discovery and Data Mining, 2010
The Expected Fitness Cost of a Mutation Fixation under the One-Dimensional Fisher Model.
Proceedings of the Bioinformatics Research and Applications, 6th International Symposium, 2010
The Direct Algorithm Applied to a Problem in Biomechanics with Conformal Mapping.
Proceedings of the 2010 International Conference on Scientific Computing, 2010
Proceedings of the 10th IEEE International Conference on Bioinformatics and Bioengineering, 2010
2009
Proceedings of the Encyclopedia of Optimization, Second Edition, 2009
Proceedings of the Encyclopedia of Optimization, Second Edition, 2009
Algorithm 897: VTDIRECT95: Serial and parallel codes for the global optimization algorithm direct.
ACM Trans. Math. Softw., 2009
An Adaptive Noise-Filtering Algorithm for AVIRIS Data With Implications for Classification Accuracy.
IEEE Trans. Geosci. Remote. Sens., 2009
IEEE Trans. Pattern Anal. Mach. Intell., 2009
Simultaneously Segmenting Multiple Gene Expression Time Courses by Analyzing Cluster Dynamics.
J. Bioinform. Comput. Biol., 2009
Int. J. High Perform. Comput. Appl., 2009
Int. J. High Perform. Comput. Appl., 2009
Int. J. Comput. Biol. Drug Des., 2009
Proceedings of the 2009 Spring Simulation Multiconference, SpringSim 2009, 2009
Examining the potential parallel scalability of a fuzzy semi-supervised classification algorithm.
Proceedings of the 2009 Spring Simulation Multiconference, SpringSim 2009, 2009
Proceedings of the 2009 Spring Simulation Multiconference, SpringSim 2009, 2009
Proceedings of the 2009 Spring Simulation Multiconference, SpringSim 2009, 2009
An Iterative Framework for the Improvement of Soft Clusters for Classificaction.
Proceedings of the 2009 International Conference on Image Processing, 2009
A Hypothesis Test for the Evaluation of Soft Clusters for Classification.
Proceedings of the 2009 International Conference on Image Processing, 2009
Radial Basis Function Collocation for the Chemical Master Equation.
Proceedings of the International Conference on Bioinformatics & Computational Biology, 2009
Modeling of Metabolic Oscillations in Mitochondria and Their Coupling in a Cell.
Proceedings of the International Conference on Bioinformatics & Computational Biology, 2009
2008
Parallel Comput., 2008
Int. J. Digit. Libr., 2008
Deterministic parallel global parameter estimation for a model of the budding yeast cell cycle.
J. Glob. Optim., 2008
Comput. Optim. Appl., 2008
Comput. Optim. Appl., 2008
Unification of problem solving environment implementation layers with XML-based specifications.
Adv. Eng. Softw., 2008
Proceedings of the 2008 Spring Simulation Multiconference, 2008
A shared memory parallel algorithm for data reduction using the singular value decomposition.
Proceedings of the 2008 Spring Simulation Multiconference, 2008
Proceedings of the 2008 Spring Simulation Multiconference, 2008
An Adaptive Noise Filtering Algorithm Based on the Maximum Noise Fraction.
Proceedings of the 2008 International Conference on Image Processing, 2008
A Fuzzy Homogeneity Test for the Iterative Guided Spectral Class Rejection Algorithm.
Proceedings of the IEEE International Geoscience & Remote Sensing Symposium, 2008
Analysis of Goldbeter-Koshland Switch Using the Chemical Master Equation.
Proceedings of the International Conference on Bioinformatics & Computational Biology, 2008
Stochastic Simulation Algorithms for Chemical Reactions.
Proceedings of the International Conference on Bioinformatics & Computational Biology, 2008
Proceedings of the 46th Annual Southeast Regional Conference, 2008
2007
Algorithm 869: ODRPACK95: A weighted orthogonal distance regression code with bound constraints.
ACM Trans. Math. Softw., 2007
Softw. Pract. Exp., 2007
Simul., 2007
J. Comput. Biol., 2007
Validation and Estimation of Parameters for a General Probabilistic Model of the PCR Process.
J. Comput. Biol., 2007
Inf. Process. Manag., 2007
Hybrid image classification and parameter selection using a shared memory parallel algorithm.
Comput. Geosci., 2007
Proceedings of the 2007 Spring Simulation Multiconference, 2007
pRIPPLE: a parallel version of a polynomial-time piecewise linear estimation algorithm.
Proceedings of the 2007 Spring Simulation Multiconference, 2007
Data Reduction using the Singular Value Decomposition for a Hybrid Classifier.
Proceedings of the 2007 International Conference on Scientific Computing, 2007
Proceedings of the 7th IEEE International Conference on Bioinformatics and Bioengineering, 2007
Proceedings of the 45th Annual Southeast Regional Conference, 2007
A performance comparison of RIPPLE and LMS for high dimensional piecewise linear functions.
Proceedings of the 45th Annual Southeast Regional Conference, 2007
2006
Algorithm 857: POLSYS_GLP - a parallel general linear product homotopy code for solving polynomial systems of equations.
ACM Trans. Math. Softw., 2006
The JigCell Model Builder: A Spreadsheet Interface for Creating Biochemical Reaction Network Models.
IEEE ACM Trans. Comput. Biol. Bioinform., 2006
Pipeline implementation of cellular automata for structural design on message-passing multiprocessors.
Math. Comput. Model., 2006
Eng. Comput., 2006
SHEPPACK: a Fortran 95 package for interpolation using the modified Shepard algorithm.
Proceedings of the 44st Annual Southeast Regional Conference, 2006
2005
J. Comput. Biol., 2005
Building modeling tools that support verification, validation, and testing for the domain expert.
Proceedings of the 37th Winter Simulation Conference, Orlando, FL, USA, December 4-7, 2005, 2005
2004
IEEE Trans. Wirel. Commun., 2004
Streams, structures, spaces, scenarios, societies (5s): A formal model for digital libraries.
ACM Trans. Inf. Syst., 2004
Towards integrated PSEs for wireless communications: experiences with the S<sup>4</sup>W and SitePlanner® projects.
ACM SIGMOBILE Mob. Comput. Commun. Rev., 2004
Generalized Linear Product Homotopy Algorithms and the Computation of Reachable Surfaces.
J. Comput. Inf. Sci. Eng., 2004
Proceedings of the 18th International Parallel and Distributed Processing Symposium (IPDPS 2004), 2004
2003
BSML: A binding schema markup language for data interchange in problem solving environments.
Sci. Program., 2003
Improving the Development Process for Eukaryotic Cell Cycle Models with a Modeling Support Environment.
Simul., 2003
Eng. Comput., 2003
Next generation modeling II - applications: improving the development process for eukaryotic cell cycle models with a modeling support environment.
Proceedings of the 35th Winter Simulation Conference: Driving Innovation, 2003
Expresso and Chips: Creating a Next Generation Microarray Experiment Management System.
Proceedings of the 17th International Parallel and Distributed Processing Symposium (IPDPS 2003), 2003
2002
A Probability-One Homotopy Algorithm for Nonsmooth Equations and Mixed Complementarity Problems.
SIAM J. Optim., 2002
Parallel Algorithms Appl., 2002
Using Hierarchical Data Mining to Characterize Performance of Wireless System Configurations
CoRR, 2002
BSML: A Binding Schema Markup Language for Data Interchange in Problem Solving Environments (PSEs)
CoRR, 2002
Concurr. Comput. Pract. Exp., 2002
Proceedings of the 16th International Parallel and Distributed Processing Symposium (IPDPS 2002), 2002
Proceedings of the 16th International Parallel and Distributed Processing Symposium (IPDPS 2002), 2002
2001
SIAM J. Optim., 2001
A Comparison of Global Optimization Methods for the Design of a High-speed Civil Transport.
J. Glob. Optim., 2001
Comput. Sci. Eng., 2001
Probability-one homotopy algorithms for solving the coupled Lyapunov equations arising in reduced-order H<sup>2</sup>/H<sup>∞</sup> modeling, estimation, and control.
Appl. Math. Comput., 2001
A Fully Distribute Parallel Global Search Algorithm.
Proceedings of the Tenth SIAM Conference on Parallel Processing for Scientific Computing, 2001
Global/Local Optimization and Blending Using Genetic Algorithms With Migration.
Proceedings of the Tenth SIAM Conference on Parallel Processing for Scientific Computing, 2001
2000
Algorithm 801: POLSYS_PLP: a partitioned linear product homotopy code for solving polynomial systems of equations.
ACM Trans. Math. Softw., 2000
A Distributed Genetic Algorithm with Migration for the Design of Composite Laminate Structures.
Parallel Algorithms Appl., 2000
Numer. Linear Algebra Appl., 2000
1999
WBCSim: A Prototype Problem Solving Environment for Wood-Based Composites Simulations.
Eng. Comput., 1999
Concurr. Pract. Exp., 1999
Proceedings of the 10th IEEE Visualization Conference, 1999
Distributed Control Parallelism for High Speed Civil Transport MDO.
Proceedings of the Ninth SIAM Conference on Parallel Processing for Scientific Computing, 1999
1998
IEEE Trans. Image Process., 1998
Numer. Linear Algebra Appl., 1998
Proceedings of the 9th IEEE Visualization Conference, 1998
Scalable Parallel Implementations of the GMRES Algorithm via Householder Reflections.
Proceedings of the 1998 International Conference on Parallel Processing (ICPP '98), 1998
1997
Algorithm 777: HOMPACK90: A Suite of Fortran 90 Codes for Globally Convergent Homotopy Algorithms.
ACM Trans. Math. Softw., 1997
Int. J. Syst. Sci., 1997
Scalability of Adaptive GMRES Algorithm.
Proceedings of the Eighth SIAM Conference on Parallel Processing for Scientific Computing, 1997
1996
Parallel Algorithms Appl., 1996
A Coarse-Grained Parallel Variable-Complexity Multidisciplinary Optimization Paradigm.
Int. J. High Perform. Comput. Appl., 1996
1995
Optimal trajectory planning for a space robot docking with a moving target via homotopy algorithms.
J. Field Robotics, 1995
Distributed Homotopy Algorithms for H<sup>2</sup> / H<sup>infinity</sup> Controller Synthesis.
Proceedings of the Seventh SIAM Conference on Parallel Processing for Scientific Computing, 1995
A Coarse Grained Variable-Complexity Approach to MDO for HSCT Design.
Proceedings of the Seventh SIAM Conference on Parallel Processing for Scientific Computing, 1995
1994
An input normal form homotopy for the L<sup>2</sup> optimal model order reduction problem.
IEEE Trans. Autom. Control., 1994
1993
The Parallel Complexity of Embedding Algorithms for the Solution of Systems of Nonlinear Equations.
IEEE Trans. Parallel Distributed Syst., 1993
ACM Trans. Math. Softw., 1993
IEEE Trans. Comput. Aided Des. Integr. Circuits Syst., 1993
SIAM J. Optim., 1993
Comput. Optim. Appl., 1993
A Homotopy Method for Solving Riccati Equations on a Shared Memory Parallel Computer.
Proceedings of the Sixth SIAM Conference on Parallel Processing for Scientific Computing, 1993
Vectorization of Homotopy Algorithms for Polynominal Systems.
Proceedings of the Sixth SIAM Conference on Parallel Processing for Scientific Computing, 1993
Domain Decomposition and High Order Finite Differences for Elliptic PDEs.
Proceedings of the Sixth SIAM Conference on Parallel Processing for Scientific Computing, 1993
1992
J. Supercomput., 1992
SIAM J. Sci. Comput., 1992
1991
SIAM J. Optim., 1991
Parallel Comput., 1991
Third Generation Cellular Automation for Modeling Excitable Media.
Proceedings of the Fifth SIAM Conference on Parallel Processing for Scientific Computing, 1991
Parallel HOMPACK: A Case Study in Parallel Mathematical Software.
Proceedings of the Fifth SIAM Conference on Parallel Processing for Scientific Computing, 1991
Shared Memory Parallel Algorithms for Homotopy Curve Tracking.
Proceedings of the International Conference on Parallel Processing, 1991
1990
Replacing Unification by Constraint Satisfaction to Improve Logic Program Expressiveness.
J. Autom. Reason., 1990
Low Dimensional Homotopy Curve Tracking on a Hypercub.
Proceedings of the 1990 International Conference on Parallel Processing, 1990
Proceedings of the ACM 18th Annual Computer Science Conference on Cooperation, 1990
1989
ACM Trans. Math. Softw., 1989
Granularity issues for solving polynomial systems via globally convergent algorithms on a hypercube.
J. Supercomput., 1989
Parallel Comput., 1989
Parallel Homotopy Curve Tracking on a Hypercube.
Proceedings of the Fourth SIAM Conference on Parallel Processing for Scientific Computing, 1989
Proceedings of the Conference on Numerical Ordinary Differential Equations, USA, 1989, 1989
1988
Image Vis. Comput., 1988
1987
Algorithm 652: HOMPACK: a suite of codes for globally convergent homotopy algorithms.
ACM Trans. Math. Softw., 1987
The Granularity of Homotopy Algorithms for Polynomial Systems of Equations.
Proceedings of the Third SIAM Conference on Parallel Processing for Scientific Computing, 1987
1986
Math. Program., 1986
1985
Topographic classification of digital image intensity surfaces using generalized splines and the discrete cosine transformation.
Comput. Vis. Graph. Image Process., 1985
1984
Pattern Recognit., 1984
Pattern Recognit., 1984
Comput. Vis. Graph. Image Process., 1984
1983
1982
IEEE Trans. Pattern Anal. Mach. Intell., 1982
1980
Algorithm 555: Chow-Yorke Algorithm for Fixed Points or Zeros of <i>C</i><sup>2</sup> Maps [C5].
ACM Trans. Math. Softw., 1980
1978
Math. Oper. Res., 1978