Layla Oesper

According to our database, Layla Oesper authored at least 20 papers between 2011 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2023

A weighted distance-based approach for deriving consensus tumor evolutionary trees.

Ziyun Guang, Matthew Smith-Erb, Layla Oesper

Bioinform., 2023

Generalized Matching Distance: Tumor Phylogeny Comparison Beyond the Infinite Sites Assumption.

Quoc Nguyen, Layla Oesper

Proceedings of the 14th ACM International Conference on Bioinformatics, 2023

2022

GraPhyC: Using Consensus to Infer Tumor Evolution.

Kiya Govek, Camden Sikes, Yangqiaoyu Zhou, Layla Oesper

IEEE ACM Trans. Comput. Biol. Bioinform., 2022

Deriving consensus tumor trees using integer linear programming.

Matthew Smith-Erb, Ziyun Guang, Layla Oesper

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022

An Approach to Relax the Infinite Sites Assumption in Tumor Phylogeny Distance Measures.

Quoc Nguyen, Layla Oesper

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022

Combining Distance Measures on Tumor Evolutionary Trees.

Cecilia Ehrlichman, Layla Oesper

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022

2020

The evolutionary history of 2,658 cancers.

Moritz Gerstung, Clemency Jolly, Ignaty Leshchiner, Stefan C. Dentro, Santiago Gonzalez, Thomas J. Mitchell, Yulia Rubanova, Pavana Anur, Kaixian Yu, Maxime Tarabichi, Amit G. Deshwar, Jeff Wintersinger, Kortine Kleinheinz, Ignacio Vázquez-García, Kerstin Haase, Lara Jerman, Subhajit Sengupta, Geoff MacIntyre, Salem Malikic, Nilgun Donmez, Dimitri G. Livitz, Marek Cmero, Jonas Demeulemeester, Steven E. Schumacher, Yu Fan, Xiaotong Yao, Juhee Lee, Matthias Schlesner, Paul C. Boutros, David D. L. Bowtell, Hongtu Zhu, Gad Getz, Marcin Imielinski, Rameen Beroukhim, Süleyman Cenk Sahinalp, Yuan Ji, Martin Peifer, Florian Markowetz, Ville Mustonen, Ke Yuan, Wenyi Wang, Quaid D. Morris, David J. Adams, Peter J. Campbell, Shaolong Cao, Elizabeth L. Christie, Yupeng Cun, Kevin J. Dawson, Ruben M. Drews, Roland Eils, Matthew Fittall, Dale W. Garsed, Gavin Ha, Henry Lee-Six, Iñigo Martincorena, Layla Oesper, Myron Peto, Benjamin J. Raphael, Daniel T. Rosebrock, Adriana Salcedo, Ruian Shi, Seung Jun Shin, Oliver Spiro, Lincoln D. Stein, Shankar Vembu, David A. Wheeler, Tsun-Po Yang, Paul T. Spellman, David C. Wedge, Peter Van Loo

Nat., 2020

Distance measures for tumor evolutionary trees.

Zach Dinardo, Kiran Tomlinson, Anna M. Ritz, Layla Oesper

Bioinform., 2020

Expanding Undergraduate Exposure to Computer Science Subfields: Resources and Lessons from a Hands-on Computational Biology Workshop.

Layla Oesper, Anya E. Vostinar

Proceedings of the 51st ACM Technical Symposium on Computer Science Education, 2020

2018

Identifying simultaneous rearrangements in cancer genomes.

Layla Oesper, Simone Dantas, Benjamin J. Raphael

Bioinform., 2018

Examining Tumor Phylogeny Inference in Noisy Sequencing Data.

Kiran Tomlinson, Layla Oesper

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2018

A Consensus Approach to Infer Tumor Evolutionary Histories.

Kiya Govek, Camden Sikes, Layla Oesper

Proceedings of the 2018 ACM International Conference on Bioinformatics, 2018

2016

Multi-state Perfect Phylogeny Mixture Deconvolution and Applications to Cancer Sequencing.

Mohammed El-Kebir, Gryte Satas, Layla Oesper, Benjamin J. Raphael

Proceedings of the Research in Computational Molecular Biology - 20th Annual Conference, 2016

2015

Computational Characterization of Heterogeneity and Rearrangements in Cancer.

Layla Oesper

PhD thesis, 2015

Reconstruction of clonal trees and tumor composition from multi-sample sequencing data.

Mohammed El-Kebir, Layla Oesper, Hannah Acheson-Field, Benjamin J. Raphael

Bioinform., 2015

2014

Quantifying tumor heterogeneity in whole-genome and whole-exome sequencing data.

Layla Oesper, Gryte Satas, Benjamin J. Raphael

Bioinform., 2014

2013

Inferring Intra-tumor Heterogeneity from High-Throughput DNA Sequencing Data.

Layla Oesper, Ahmad Mahmoody, Benjamin J. Raphael

Proceedings of the Research in Computational Molecular Biology, 2013

Workshop: Reconstructing the organization of cancer genomes.

Layla Oesper, Benjamin J. Raphael

Proceedings of the IEEE 3rd International Conference on Computational Advances in Bio and Medical Sciences, 2013

2012

Reconstructing cancer genomes from paired-end sequencing data.

Layla Oesper, Anna M. Ritz, Sarah J. Aerni, Ryan Drebin, Benjamin J. Raphael

BMC Bioinform., 2012

2011

WordCloud: a Cytoscape plugin to create a visual semantic summary of networks.

Layla Oesper, Daniele Merico, Ruth Isserlin, Gary D. Bader

Source Code Biol. Medicine, 2011