Kyungsook Han

According to our database, Kyungsook Han authored at least 108 papers between 1990 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

Constructing Integrative ceRNA Networks and Finding Prognostic Biomarkers in Renal Cell Carcinoma.

Seokwoo Lee, Wook Lee, Shulei Ren, Byungkyu Park, Kyungsook Han

IEEE ACM Trans. Comput. Biol. Bioinform., 2023

Constructing a Cancer Patient-Specific Network Based on Second-Order Partial Correlations of Gene Expression and DNA Methylation.

Wook Lee, Seokwoo Lee, Kyungsook Han

IEEE ACM Trans. Comput. Biol. Bioinform., 2023

2022

DLoopCaller: A deep learning approach for predicting genome-wide chromatin loops by integrating accessible chromatin landscapes.

Siguo Wang, Qinhu Zhang, Ying He, Zhen Cui, Zhen-Hao Guo, Kyungsook Han, De-Shuang Huang

PLoS Comput. Biol., October, 2022

A Deep Learning Model for RNA-Protein Binding Preference Prediction Based on Hierarchical LSTM and Attention Network.

Zhen Shen, Qinhu Zhang, Kyungsook Han, De-Shuang Huang

IEEE ACM Trans. Comput. Biol. Bioinform., 2022

A New Approach to Deriving Prognostic Gene Pairs From Cancer Patient-Specific Gene Correlation Networks.

Byungkyu Park, Wook Lee, Kyungsook Han

IEEE ACM Trans. Comput. Biol. Bioinform., 2022

Guest Editorial for Special Section on the 16th International Conference on Intelligent Computing (ICIC).

De-Shuang Huang, Kyungsook Han, Tatsuya Akutsu

IEEE ACM Trans. Comput. Biol. Bioinform., 2022

Predicting Lymph Node Metastasis and Distant Metastasis using Differential Correlations of miRNAs and Their Target RNAs in Cancer.

Seokwoo Lee, Myounghoon Cho, Wook Lee, Byungkyu Park, Kyungsook Han

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2022

2021

Multi-Scale Capsule Network for Predicting DNA-Protein Binding Sites.

Qinhu Zhang, Wenbo Yu, Kyungsook Han, Asoke K. Nandi, De-Shuang Huang

IEEE ACM Trans. Comput. Biol. Bioinform., 2021

Predicting TF-DNA Binding Motifs from ChIP-seq Datasets Using the Bag-Based Classifier Combined With a Multi-Fold Learning Scheme.

Qinhu Zhang, Dailun Wang, Kyungsook Han, De-Shuang Huang

IEEE ACM Trans. Comput. Biol. Bioinform., 2021

GeneCoNet: A web application server for constructing cancer patient-specific gene correlation networks with prognostic gene pairs.

Byungkyu Park, Wook Lee, Kyungsook Han

Comput. Methods Programs Biomed., 2021

A Method for Constructing an Integrative Network of Competing Endogenous RNAs.

Seokwoo Lee, Wook Lee, Shulei Ren, Kyungsook Han

Proceedings of the Intelligent Computing Theories and Application, 2021

2020

Constructive Prediction of Potential RNA Aptamers for a Protein Target.

Wook Lee, Kyungsook Han

IEEE ACM Trans. Comput. Biol. Bioinform., 2020

Discovering protein-binding RNA motifs with a generative model of RNA sequences.

Byungkyu Park, Kyungsook Han

Comput. Biol. Chem., 2020

2019

Integration of Multi-Omics Data for Gene Regulatory Network Inference and Application to Breast Cancer.

Lin Yuan, Lehang Guo, Chang-an Yuan, Youhua Zhang, Kyungsook Han, Asoke K. Nandi, Barry Honig, De-Shuang Huang

IEEE ACM Trans. Comput. Biol. Bioinform., 2019

2018

Sequence-Based Prediction of Putative Transcription Factor Binding Sites in DNA Sequences of Any Length.

Wook Lee, Byungkyu Park, Kyungsook Han

IEEE ACM Trans. Comput. Biol. Bioinform., 2018

Mutli-Features Prediction of Protein Translational Modification Sites.

Wenzheng Bao, Chang-An Yuan, Youhua Zhang, Kyungsook Han, Asoke K. Nandi, Barry Honig, De-Shuang Huang

IEEE ACM Trans. Comput. Biol. Bioinform., 2018

Constructing Gene Co-expression Networks for Prognosis of Lung Adenocarcinoma.

Byungkyu Park, Jinho Im, Kyungsook Han

Proceedings of the Intelligent Computing Theories and Application, 2018

Finding Potential RNA Aptamers for a Protein Target Using Sequence and Structure Features.

Wook Lee, Jisu Lee, Kyungsook Han

Proceedings of the Intelligent Computing Theories and Application, 2018

Finding Protein-Binding Nucleic Acid Sequences Using a Long Short-Term Memory Neural Network.

Jinho Im, Byungkyu Park, Kyungsook Han

Proceedings of the Intelligent Computing Theories and Application, 2018

2017

An improved method for predicting interactions between virus and human proteins.

Byungmin Kim, Saud Alguwaizani, Xiang Zhou, De-Shuang Huang, Byunkyu Park, Kyungsook Han

J. Bioinform. Comput. Biol., 2017

miRNA-Disease Association Prediction with Collaborative Matrix Factorization.

Zhen Shen, You-Hua Zhang, Kyungsook Han, Asoke K. Nandi, Barry Honig, De-Shuang Huang

Complex., 2017

Predicting protein-binding regions in RNA using nucleotide profiles and compositions.

Daesik Choi, Byungkyu Park, Hanju Chae, Wook Lee, Kyungsook Han

BMC Syst. Biol., 2017

2016

GeneNetFinder2: Improved Inference of Dynamic Gene Regulatory Relations with Multiple Regulators.

Kyungsook Han, Jeonghoon Lee

IEEE ACM Trans. Comput. Biol. Bioinform., 2016

An efficient algorithm for planar drawing of RNA structures with pseudoknots of any type.

Yanga Byun, Kyungsook Han

J. Bioinform. Comput. Biol., 2016

PRIdictor: Protein-RNA Interaction predictor.

Narankhuu Tuvshinjargal, Wook Lee, Byungkyu Park, Kyungsook Han

Biosyst., 2016

Novel Algorithm for Multiple Quantitative Trait Loci Mapping by Using Bayesian Variable Selection Regression.

Lin Yuan, Kyungsook Han, De-Shuang Huang

Proceedings of the Intelligent Computing Methodologies - 12th International Conference, 2016

Predicting Transcription Factor Binding Sites in DNA Sequences Without Prior Knowledge.

Wook Lee, Byungkyu Park, Daesik Choi, Chungkeun Lee, Hanju Chae, Kyungsook Han

Proceedings of the Intelligent Computing Theories and Application, 2016

Prediction of Target Genes Based on Multiway Integration of High-Throughput Data.

Wei-Li Guo, Kyungsook Han, De-Shuang Huang

Proceedings of the Intelligent Computing Theories and Application, 2016

Analysis of MicroRNA and Transcription Factor Regulation.

Wei-Li Guo, Kyungsook Han, De-Shuang Huang

Proceedings of the Intelligent Computing Theories and Application, 2016

Prediction of Lysine Acetylation Sites Based on Neural Network.

Wenzheng Bao, Zhichao Jiang, Kyungsook Han, De-Shuang Huang

Proceedings of the Intelligent Computing Theories and Application, 2016

2015

Assessing protein-protein interactions based on the semantic similarity of interacting proteins.

Guangyu Cui, Byungmin Kim, Saud Alguwaizani, Kyungsook Han

Int. J. Data Min. Bioinform., 2015

Predicting protein-binding RNA nucleotides with consideration of binding partners.

Narankhuu Tuvshinjargal, Wook Lee, Byungkyu Park, Kyungsook Han

Comput. Methods Programs Biomed., 2015

SVM-Based Classification of Diffusion Tensor Imaging Data for Diagnosing Alzheimer's Disease and Mild Cognitive Impairment.

Wook Lee, Byungkyu Park, Kyungsook Han

Proceedings of the Intelligent Computing Theories and Methodologies, 2015

2014

Sequence-based prediction of protein-binding sites in DNA: Comparative study of two SVM models.

Byungkyu Brian Park, Jinyong Im, Narankhuu Tuvshinjargal, Wook Lee, Kyungsook Han

Comput. Methods Programs Biomed., 2014

DBBP: database of binding pairs in protein-nucleic acid interactions.

Byungkyu Brian Park, Hyungchan Kim, Kyungsook Han

BMC Bioinform., 2014

Inference of Dynamic Gene Regulatory Relations with Multiple Regulators.

Jeonghoon Lee, Yu Chen, Kyungsook Han

Proceedings of the Intelligent Computing in Bioinformatics - 10th International Conference, 2014

2013

Classification of diffusion tensor images for the early detection of Alzheimer's disease.

Wook Lee, Byungkyu Park, Kyungsook Han

Comput. Biol. Medicine, 2013

Predicting protein-binding RNA nucleotides using the feature-based removal of data redundancy and the interaction propensity of nucleotide triplets.

Sungwook Choi, Kyungsook Han

Comput. Biol. Medicine, 2013

KGVDB: a population-based genomic map of CNVs tagged by SNPs in Koreans.

Sanghoon Moon, Kwang Su Jung, Young Jin Kim, Mi Yeong Hwang, Kyungsook Han, Jong-Young Lee, Kiejung Park, Bong-Jo Kim

Bioinform., 2013

Database of Protein-Nucleic Acid Binding Pairs at Atomic and Residue Levels.

Byungkyu Park, Hyungchan Kim, Sangmin Lee, Kyungsook Han

Proceedings of the Emerging Intelligent Computing Technology and Applications, 2013

Scoring Protein-Protein Interactions Using the Width of Gene Ontology Terms and the Information Content of Common Ancestors.

Guangyu Cui, Kyungsook Han

Proceedings of the Emerging Intelligent Computing Technology and Applications, 2013

2012

Modeling the interactions of Alzheimer-related genes from the whole brain microarray data and diffusion tensor images of human brain.

Byungkyu Park, Wook Lee, Kyungsook Han

BMC Bioinform., 2012

Prediction of protein-protein interactions between viruses and human by an SVM model.

Guangyu Cui, Chao Fang, Kyungsook Han

BMC Bioinform., 2012

2011

Prediction of RNA-binding amino acids from protein and RNA sequences.

Sungwook Choi, Kyungsook Han

BMC Bioinform., 2011

Connectivity Analysis of Hippocampus in Alzheimer's Brain Using Probabilistic Tractography.

Md. Kamrul Hasan, Wook Lee, Byungkyu Park, Kyungsook Han

Proceedings of the Bio-Inspired Computing and Applications, 2011

Prediction of Human Proteins Interacting with Human Papillomavirus Proteins.

Guangyu Cui, Chao Fang, Kyungsook Han

Proceedings of the Bio-Inspired Computing and Applications, 2011

2010

Gene expression data classification using locally linear discriminant embedding.

Bo Li, Chun-Hou Zheng, De-Shuang Huang, Lei Zhang, Kyungsook Han

Comput. Biol. Medicine, 2010

A semi-supervised learning approach to predict synthetic genetic interactions by combining functional and topological properties of functional gene network.

Zhuhong You, Zheng Yin, Kyungsook Han, De-Shuang Huang, Xiaobo Zhou

BMC Bioinform., 2010

An ontology-based search engine for protein-protein interactions.

Byungkyu Park, Kyungsook Han

BMC Bioinform., 2010

2009

Finding motif pairs in the interactions between heterogeneous proteins via bootstrapping and boosting.

Jisu Kim, De-Shuang Huang, Kyungsook Han

BMC Bioinform., 2009

PseudoViewer3: generating planar drawings of large-scale RNA structures with pseudoknots.

Yanga Byun, Kyungsook Han

Bioinform., 2009

Dynamic Identification and Visualization of Gene Regulatory Networks from Time-Series Gene Expression Profiles.

Yu Chen, Kyungsook Han

Proceedings of the Emerging Intelligent Computing Technology and Applications, 2009

2008

Prediction of Binding Sites in HCV Protein Complexes Using a Support Vector Machine.

Taihui Yoo, Jaetak Lee, Kyungsook Han

Proceedings of the Advanced Intelligent Computing Theories and Applications. With Aspects of Theoretical and Methodological Issues, 2008

Prediction of RNA-Binding Residues in Proteins Using the Interaction Propensities of Amino Acids and Nucleotides.

Rojan Shrestha, Jisu Kim, Kyungsook Han

Proceedings of the Advanced Intelligent Computing Theories and Applications. With Aspects of Theoretical and Methodological Issues, 2008

2007

A general computational model for predicting ribosomal frameshifts in genome sequences.

Yanga Byun, Sanghoon Moon, Kyungsook Han

Comput. Biol. Medicine, 2007

Hepatitis C virus contact map prediction based on binary encoding strategy.

Guang-Zheng Zhang, Kyungsook Han

Comput. Biol. Chem., 2007

FSDB: A frameshift signal database.

Sanghoon Moon, Yanga Byun, Kyungsook Han

Comput. Biol. Chem., 2007

Predicting Binding Sites of Hepatitis C Virus Complexes Using Residue Binding Propensity and Sequence Entropy.

Guang-Zheng Zhang, Chirag Nepal, Kyungsook Han

Proceedings of the Computational Science, 2007

Comparative Analysis of the Interaction Networks of HIV-1 and Human Proteins.

Kyungsook Han, Byungkyu Park

Proceedings of the Computational Science - ICCS 2007, 7th International Conference, Beijing, China, May 27, 2007

Mining Molecular Structure Data for the Patterns of Interactions Between Protein and RNA.

Kyungsook Han, Chirag Nepal

Proceedings of the Computational Science, 2007

Discovering Inter-Domain Paths between Hepatitis C Virus NS5A and Human Liver Proteins.

Guang-Zheng Zhang, Kyungsook Han

Proceedings of the Frontiers in the Convergence of Bioscience and Information Technologies 2007, 2007

Estimating the Reliability of Protein-Protein Interactions.

Byungkyu Park, Kyungsook Han

Proceedings of the Frontiers in the Convergence of Bioscience and Information Technologies 2007, 2007

Analysis of HCV Envelope Proteins Interacting with Human Proteins.

Chirag Nepal, Kyungsook Han

Proceedings of the Frontiers in the Convergence of Bioscience and Information Technologies 2007, 2007

Prediction of Interacting Motif Pairs Using Stochastic Boosting.

Jisu Kim, Byungkyu Park, Kyungsook Han

Proceedings of the Frontiers in the Convergence of Bioscience and Information Technologies 2007, 2007

Identifying Functional Groups by Finding Cliques and Near-Cliques in Protein Interaction Networks.

Kyungsook Han, Guangyu Cui, Yu Chen

Proceedings of the Frontiers in the Convergence of Bioscience and Information Technologies 2007, 2007

Multi-Layered Networks for Visualizing the Interactions between Heterogeneous Proteins.

Yu Chen, Guangyu Cui, Kyungsook Han

Proceedings of the Frontiers in the Convergence of Bioscience and Information Technologies 2007, 2007

2006

PseudoViewer: web application and web service for visualizing RNA pseudoknots and secondary structures.

Yanga Byun, Kyungsook Han

Nucleic Acids Res., 2006

Web Service for Predicting Interacting Proteins and Application to Human and HIV-1 Proteins.

Byungkyu Park, Kyungsook Han

Proceedings of the Computational Intelligence and Bioinformatics, 2006

Prediction of Ribosomal -1 Frameshifts in the <i>Escherichia coli</i> K12 Genome.

Sanghoon Moon, Yanga Byun, Kyungsook Han

Proceedings of the Computational Intelligence and Bioinformatics, 2006

Prediction of Readthroughs Based on the Statistical Analysis of Nucleotides Around Stop Codons.

Sanghoon Moon, Yanga Byun, Kyungsook Han

Proceedings of the Computational Science, 2006

Web Service for Finding Ribosomal Frameshifts.

Yanga Byun, Sanghoon Moon, Kyungsook Han

Proceedings of the Computational Science, 2006

2005

PSIbase: a database of Protein Structural Interactome map (PSIMAP).

Sungsam Gong, Giseok Yoon, Insoo Jang, Dan M. Bolser, Panos Dafas, Michael Schroeder, Hansol Choi, Yoobok Cho, Kyungsook Han, Sunghoon Lee, Hwanho Choi, Michael Lappe, Liisa Holm, Sangsoo Kim, Donghoon Oh, Jonghwa Bhak

Bioinform., 2005

Online Prediction of Interacting Proteins with a User-Specified Protein.

Byungkyu Park, Kyungsook Han

Proceedings of the Computational Science, 2005

A Layout Algorithm for Signal Transduction Pathways as Two-Dimensional Drawings with Spline Curves.

Donghoon Lee, Byoung-Hyun Ju, Kyungsook Han

Proceedings of the Computational Science, 2005

Prediction of Protein Interactions by the Domain and Sub-cellular Localization Information.

Jinsun Hong, Kyungsook Han

Proceedings of the Computational Science, 2005

Prediction of Ribosomal Frameshift Signals of User-Defined Models.

Yanga Byun, Sanghoon Moon, Kyungsook Han

Proceedings of the Computational Science, 2005

2004

WebInterViewer: visualizing and analyzing molecular interaction networks.

Kyungsook Han, Byong-Hyon Ju, Haemoon Jung

Nucleic Acids Res., 2004

Three-dimensional visualization of protein interaction networks.

Kyungsook Han, Yanga Byun

Comput. Biol. Medicine, 2004

HPID: The Human Protein Interaction Database.

Kyungsook Han, Byungkyu Park, Hyongguen Kim, Jinsun Hong, Jong-Chan Park

Bioinform., 2004

Computational Identification of -1 Frameshift Signals.

Sanghoon Moon, Yanga Byun, Kyungsook Han

Proceedings of the Computational Science, 2004

PairAnalyzer: Extracting and Visualizing RNA Structure Elements Formed by Base Pairing.

Daeho Lim, Kyungsook Han

Proceedings of the Computational Science, 2004

Prediction of Protein Functions Using Protein Interaction Data.

Haemoon Jung, Kyungsook Han

Proceedings of the Computational Science, 2004

A Database Server for Predicting Protein-Protein Interactions.

Kyungsook Han, Byungkyu Park

Proceedings of the Computational Science, 2004

Prediction of Binding Sites in Protein-Nucleic Acid Complexes.

Namshik Han, Kyungsook Han

Proceedings of the Computational Science, 2004

DNA Secondary Structures for Probe Design.

Yanga Byun, Kyungsook Han

Proceedings of the Graph Drawing, 12th International Symposium, 2004

Dynamic Visualization of Signal Transduction Pathways from Database Information.

Donghoon Lee, Byoung-Hyun Ju, Kyungsook Han

Proceedings of the Artificial Intelligence and Simulation, 2004

2003

PSEUDOVIEWER2: visualization of RNA pseudoknots of any type.

Kyungsook Han, Yanga Byun

Nucleic Acids Res., 2003

Visualization and analysis of protein interactions.

Byong-Hyon Ju, Byungkyu Park, Jong H. Park, Kyungsook Han

Bioinform., 2003

A fast layout algorithm for protein interaction networks.

Kyungsook Han, Byong-Hyon Ju

Bioinform., 2003

Predicting Protein Interactions in Human by Homologous Interactions in Yeast.

Hyongguen Kim, Jong-Chan Park, Kyungsook Han

Proceedings of the Advances in Knowledge Discovery and Data Mining, 2003

Complexity management in visualizing protein interaction networks.

Byong-Hyon Ju, Kyungsook Han

Proceedings of the Eleventh International Conference on Intelligent Systems for Molecular Biology, June 29, 2003

A Genetic Algorithm for Predicting RNA Pseudoknot Structures.

Dongkyu Lee, Kyungsook Han

Proceedings of the Computational Science - ICCS 2003, 2003

Computational Approach to Structural Analysis of Protein-RNA Complexes.

Namshik Han, Hyunwoo Kim, Kyungsook Han

Proceedings of the Computational Science - ICCS 2003, 2003

Visualization of Protein-Protein Interaction Networks Using Force-Directed Layout.

Yanga Byun, Kyungsook Han

Proceedings of the Computational Science - ICCS 2003, 2003

Mining RNA Structure Elements from the Structure Data of Protein-RNA Complexes.

Daeho Lim, Kyungsook Han

Proceedings of the Discovery Science, 6th International Conference, 2003

A Genetic Algorithm for Inferring Pseudoknotted RNA Structures from Sequence Data.

Dongkyu Lee, Kyungsook Han

Proceedings of the Discovery Science, 6th International Conference, 2003

2002

Simulation studies of the effects of user mobility on the handoff performance of mobile communications.

Kyungsook Han

Simul. Model. Pract. Theory, 2002

Visualization of RNA Pseudoknot Structures.

Wootaek Kim, Yujin Lee, Kyungsook Han

Proceedings of the High Performance Computing for Computational Science, 2002

PseudoViewer: automatic visualization of RNA pseudoknots.

Kyungsook Han, Yujin Lee, Wootaek Kim

Proceedings of the Tenth International Conference on Intelligent Systems for Molecular Biology, 2002

InterViewer: Dynamic Visualization of Protein-Protein Interactions.

Kyungsook Han, Byong-Hyon Ju, Jong H. Park

Proceedings of the Graph Drawing, 10th International Symposium, 2002

A Partitioned Approach to Protein Interaction Mapping.

Yanga Byun, Euna Jeong, Kyungsook Han

Proceedings of the Graph Drawing, 10th International Symposium, 2002

A Mobile System for Extracting and Visualizing Protein-Protein Interactions.

Kyungsook Han, Hyoungguen Kim

Proceedings of the EurAsia-ICT 2002: Information and Communication Technology, 2002

New Representation and Algorithm for Drawing RNA Structure with Pseudoknots.

Yujin Lee, Wootaek Kim, Kyungsook Han

Proceedings of the Data Warehousing and Knowledge Discovery, 4th International Conference, 2002

2001

Web-Based Intelligent Call Center for an Intensive Care Unit.

Kyungsook Han, Dongkyu Lee

Proceedings of the Web Intelligence: Research and Development, 2001

1999

A vector-based method for drawing RNA secondary structure.

Kyungsook Han, Dohyung Kim, Hong-Jin Kim

Bioinform., 1999

1994

The Epistemology of Physical System Modeling.

Kyungsook Han, Andrew Gelsey

Proceedings of the 12th National Conference on Artificial Intelligence, Seattle, WA, USA, July 31, 1994

1993

Qualitative Modeling of RNA Structure.

Kyungsook Han, Andrew Gelsey

Proceedings of the 13th International Joint Conference on Artificial Intelligence. Chambéry, France, August 28, 1993

1990

Knowledge Specification of an Expert System.

James R. Slagle, David A. Gardiner, Kyungsook Han

IEEE Expert, 1990