Kyle Ellrott

According to our database, Kyle Ellrott authored at least 13 papers between 2002 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of three.

2024

The GA4GH Task Execution Application Programming Interface: Enabling Easy Multicloud Task Execution.

Alexander Kanitz, Matthew H. McLoughlin, Liam Beckman, Venkat S. Malladi, Kyle Ellrott

Comput. Sci. Eng., 2024

The GA4GH Task Execution API: Enabling Easy Multi Cloud Task Execution.

Alexander Kanitz, Matthew H. McLoughlin, Liam Beckman, Venkat S. Malladi, Kyle Ellrott

CoRR, 2024

2023

TCGA Kidney Cancers.

John N. Weinstein, Eric A. Collisson, Gordon B. Mills, Kenna R. Mills Shaw, Brad A. Ozenberger, Kyle Ellrott, Ilya Shmulevich, Chris Sander, Joshua M. Stuart

Dataset, September, 2023

2020

neoepiscope improves neoepitope prediction with multivariant phasing.

Mary A Wood, Austin Nguyen, Adam J. Struck, Kyle Ellrott, Abhinav Nellore, Reid F. Thompson

Bioinform., 2020

2018

Germline contamination and leakage in whole genome somatic single nucleotide variant detection.

Dorota H. Sendorek, Cristian Caloian, Kyle Ellrott, J. Christopher Bare, Takafumi N. Yamaguchi, Adam D. Ewing, Kathleen E. Houlahan, Thea C. Norman, Adam A. Margolin, Joshua M. Stuart, Paul C. Boutros

BMC Bioinform., 2018

Valection: design optimization for validation and verification studies.

Christopher I Cooper, Delia Yao, Dorota H. Sendorek, Takafumi N. Yamaguchi, Christine P'ng, Kathleen E. Houlahan, Cristian Caloian, Michael Fraser, Kyle Ellrott, Adam A. Margolin, Robert G. Bristow, Joshua M. Stuart, Paul C. Boutros

BMC Bioinform., 2018

2013

The UCSC Cancer Genomics Browser: update 2013.

Mary Goldman, Brian Craft, Teresa Swatloski, Kyle Ellrott, Melissa S. Cline, Mark Diekhans, Singer Ma, Chris Wilks, Joshua M. Stuart, David Haussler, Jingchun Zhu

Nucleic Acids Res., 2013

2011

TOPSAN: a dynamic web database for structural genomics.

Kyle Ellrott, Christian M. Zmasek, Dana Weekes, S. Sri Krishna, Constantina Bakolitsa, Adam Godzik, John C. Wooley

Nucleic Acids Res., 2011

2010

Expansion of the Protein Repertoire in Newly Explored Environments: Human Gut Microbiome Specific Protein Families.

Kyle Ellrott, Lukasz Jaroszewski, Weizhong Li, John C. Wooley, Adam Godzik

PLoS Comput. Biol., 2010

2008

Improving the Performance of protein Threading Using Insertion/Deletion Frequency Arrays.

Kyle Ellrott, Jun-tao Guo, Victor Olman, Ying Xu

J. Bioinform. Comput. Biol., 2008

2004

PROSPECT-PSPP: an automatic computational pipeline for protein structure prediction.

Jun-tao Guo, Kyle Ellrott, Won Jae Chung, Dong Xu, Sergei Passovets, Ying Xu

Nucleic Acids Res., 2004

2003

A computational pipeline for protein structure prediction and analysis at genome scale.

Manesh J. Shah, Sergei Passovets, Dongsup Kim, Kyle Ellrott, Li Wang, Inna Vokler, Philip F. LoCascio, Dong Xu, Ying Xu

Bioinform., 2003

2002

Identifying transcription factor binding sites through Markov chain optimization.

Kyle Ellrott, Chuhu Yang, Frances M. Sladek, Tao Jiang

Proceedings of the European Conference on Computational Biology (ECCB 2002), 2002