Krishna R. Kalari

According to our database, Krishna R. Kalari authored at least 12 papers between 2006 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

A Short Survey on Set-Based Aggregation Techniques for Single-Vector WSI Representation in Digital Pathology.

Sobhan Hemati, Krishna R. Kalari, Hamid R. Tizhoosh

CoRR, 2024

2020

Alternating EM algorithm for a bilinear model in isoform quantification from RNA-seq data.

Wenjiang Deng, Tian Mou, Krishna R. Kalari, Nifang Niu, Liewei Wang, Yudi Pawitan, Trung-Nghia Vu

Bioinform., 2020

2019

Cell-level somatic mutation detection from single-cell RNA sequencing.

Trung-Nghia Vu, Ha-Nam Nguyen, Stefano Calza, Krishna R. Kalari, Liewei Wang, Yudi Pawitan

Bioinform., 2019

2018

HGT-ID: an efficient and sensitive workflow to detect human-viral insertion sites using next-generation sequencing data.

Saurabh Baheti, Xiaojia Tang, Daniel R. O'Brien, Nicholas Chia, Lewis R. Roberts, Heidi Nelson, Judy C. Boughey, Liewei Wang, Matthew P. Goetz, Jean-Pierre A. Kocher, Krishna R. Kalari

BMC Bioinform., 2018

Isoform-level gene expression patterns in single-cell RNA-sequencing data.

Trung-Nghia Vu, Quin F. Wills, Krishna R. Kalari, Nifang Niu, Liewei Wang, Yudi Pawitan, Mattias Rantalainen

Bioinform., 2018

2016

Beta-Poisson model for single-cell RNA-seq data analyses.

Trung-Nghia Vu, Quin F. Wills, Krishna R. Kalari, Nifang Niu, Liewei Wang, Mattias Rantalainen, Yudi Pawitan

Bioinform., 2016

Interpreting functional effects of coding variants: challenges in proteome-scale prediction, annotation and assessment.

Khader Shameer, Lokesh P. Tripathi, Krishna R. Kalari, Joel T. Dudley, Ramanathan Sowdhamini

Briefings Bioinform., 2016

Unsupervised single-cell analysis in triple-negative breast cancer: A case study.

Arjun P. Athreya, Alan J. Gaglio, Zbigniew T. Kalbarczyk, Ravishankar K. Iyer, Junmei Cairns, Krishna R. Kalari, Richard M. Weinshilboum, Liewei Wang

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2016

2014

MAP-RSeq: Mayo Analysis Pipeline for RNA sequencing.

Krishna R. Kalari, Asha A. Nair, Jaysheel D. Bhavsar, Daniel R. O'Brien, Jaime I. Dávila, Matthew A. Bockol, Jinfu J. Nie, Xiaojia Tang, Saurabh Baheti, Jay B. Doughty, Sumit Middha, Hugues Sicotte, E. Aubrey Thompson, Yan W. Asmann, Jean-Pierre A. Kocher

BMC Bioinform., 2014

2012

TREAT: a bioinformatics tool for variant annotations and visualizations in targeted and exome sequencing data.

Yan W. Asmann, Sumit Middha, Asif Hossain, Saurabh Baheti, Ying Li, High-Seng Chai, Zhifu Sun, Patrick H. Duffy, Ahmed A. Hadad, Asha A. Nair, Xiaoyu Liu, Yuji Zhang, Eric W. Klee, Krishna R. Kalari, Jean-Pierre A. Kocher

Bioinform., 2012

2008

A knowledge-based approach to predict intragenic deletions or duplications.

Krishna R. Kalari, Thomas L. Casavant, Todd E. Scheetz

Bioinform., 2008

2006

First Exons and Introns - A Survey of GC Content and Gene Structure in the Human Genome.

Krishna R. Kalari, Melanie Casavant, Thomas B. Bair, Henry L. Keen, Josep M. Comeron, Thomas L. Casavant, Todd E. Scheetz

Silico Biol., 2006