Koon-Kiu Yan

According to our database, Koon-Kiu Yan authored at least 10 papers between 2006 and 2020.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2020

The corrected gene proximity map for analyzing the 3D genome organization using Hi-C data.

Cheng Ye, Alberto Paccanaro, Mark Gerstein, Koon-Kiu Yan

BMC Bioinform., 2020

2017

MrTADFinder: A network modularity based approach to identify topologically associating domains in multiple resolutions.

Koon-Kiu Yan, Shaoke Lou, Mark Gerstein

PLoS Comput. Biol., 2017

HiC-spector: a matrix library for spectral and reproducibility analysis of Hi-C contact maps.

Koon-Kiu Yan, Galip Gürkan Yardimci, Chengfei Yan, William S. Noble, Mark Gerstein

Bioinform., 2017

2015

Loregic: A Method to Characterize the Cooperative Logic of Regulatory Factors.

Daifeng Wang, Koon-Kiu Yan, Cristina Sisu, Chao Cheng, Joel S. Rozowsky, William Meyerson, Mark B. Gerstein

PLoS Comput. Biol., 2015

2014

Comparative analysis of regulatory information and circuits across distant species Open.

Alan P. Boyle, Carlos L. Araya, Cathleen Brdlik, Philip Cayting, Chao Cheng, Yong Cheng, Kathryn Gardner, LaDeana W. Hillier, Judith Janette, Lixia Jiang, Dionna Kasper, Trupti Kawli, Pouya Kheradpour, Anshul Kundaje, Jingyi Jessica Li, Lijia Ma, Wei Niu, E. Jay Rehm, Joel S. Rozowsky, Matthew Slattery, Rebecca Spokony, Robert Terrell, Dionne Vafeados, Daifeng Wang, Peter Weisdepp, Yi-Chieh Wu, Dan Xie, Koon-Kiu Yan, Elise A. Feingold, Peter J. Good, Michael J. Pazin, Haiyan Huang, Peter J. Bickel, Steven E. Brenner, Valerie Reinke, Robert H. Waterston, Mark Gerstein, Kevin P. White, Manolis Kellis, Michael Snyder

Nat., 2014

2011

Measuring the Evolutionary Rewiring of Biological Networks.

Chong Shou, Nitin Bhardwaj, Hugo Y. K. Lam, Koon-Kiu Yan, Philip M. Kim, Michael Snyder, Mark B. Gerstein

PLoS Comput. Biol., 2011

Construction and Analysis of an Integrated Regulatory Network Derived from High-Throughput Sequencing Data.

Chao Cheng, Koon-Kiu Yan, Woochang Hwang, Jiang Qian, Nitin Bhardwaj, Joel S. Rozowsky, Zhi John Lu, Wei Niu, Pedro Alves, Masaomi Kato, Michael Snyder, Mark Gerstein

PLoS Comput. Biol., 2011

2010

Analysis of Combinatorial Regulation: Scaling of Partnerships between Regulators with the Number of Governed Targets.

Nitin Bhardwaj, Matthew B. Carson, Alexej Abyzov, Koon-Kiu Yan, Hui Lu, Mark B. Gerstein

PLoS Comput. Biol., 2010

Hierarchical analysis of regulatory networks and cross-disciplinary comparison with the Linux call graph.

Koon-Kiu Yan, Mark Gerstein

Proceedings of the 2010 IEEE International Workshop on Genomic Signal Processing and Statistics, 2010

2006

Ranking Scientific Publications Using a Simple Model of Network Traffic

Dylan Walker, Huafeng Xie, Koon-Kiu Yan, Sergei Maslov

CoRR, 2006