Klaas Vandepoele

According to our database, Klaas Vandepoele authored at least 15 papers between 2011 and 2022.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2022

The Quest for Orthologs orthology benchmark service in 2022.

Yannis Nevers, Tamsin E. M. Jones, Dushyanth Jyothi, Bethan Yates, Meritxell Ferret, Laura Portell-Silva, Laia Codó, Salvatore Cosentino, Marina Marcet-Houben, Anna Vlasova, Laetitia Poidevin, Arnaud Kress, Mark Hickman, Emma Persson, Ivana Pilizota, Cristina Guijarro-Clarke, Adrian M. Altenhoff, Elspeth A. Bruford, Christophe Dessimoz, Ingo Ebersberger, David M. Emms, Toni Gabaldón, Natasha M. Glover, Yanhui Hu, Wataru Iwasaki, Odile Lecompte, Benjamin Linard, María J. Martín, David S. Roos, Erik Sonhammer, Paul D. Thomas, David Thybert, Klaas Vandepoele, Salvador Capella-Gutiérrez, Asier Gonzalez-Uriarte, Javier Garrayo-Ventas, Dmitry Repchevsky, Vicky Sundesha, Erik L. L. Sonnhammer

Nucleic Acids Res., 2022

JASPAR 2022: the 9th release of the open-access database of transcription factor binding profiles.

Jaime Abraham Castro-Mondragón, Rafael Riudavets Puig, Ieva Rauluseviciute, Roza Berhanu lemma, Laura Turchi, Romain Blanc-Mathieu, Jeremy Lucas, Paul Boddie, Aziz Khan, Nicolás Manosalva Pérez, Oriol Fornes, Tiffany Y. Leung, Alejandro Aguirre, Fayrouz Hammal, Daniel Schmelter, Damir Baranasic, Benoît Ballester, Albin Sandelin, Boris Lenhard, Klaas Vandepoele, Wyeth W. Wasserman, François Parcy, Anthony Mathelier

Nucleic Acids Res., 2022

PLAZA 5.0: extending the scope and power of comparative and functional genomics in plants.

Michiel Van Bel, Francesca Silvestri, Eric M. Weitz, Lukasz Kreft, Alexander Botzki, Frederik Coppens, Klaas Vandepoele

Nucleic Acids Res., 2022

2021

Comment on 'Hayai-Annotation Plants: an ultrafast and comprehensive functional gene annotation system in plants': the importance of taking the GO graph structure into account.

Michiel Van Bel, Klaas Vandepoele

Bioinform., 2021

2019

Curse: building expression atlases and co-expression networks from public RNA-Seq data.

Dries Vaneechoutte, Klaas Vandepoele

Bioinform., 2019

2018

JASPAR 2018: update of the open-access database of transcription factor binding profiles and its web framework.

Aziz Khan, Oriol Fornes, Arnaud Stigliani, Marius Gheorghe, Jaime Abraham Castro-Mondragón, Robin van der Lee, Adrien Bessy, Jeanne Chèneby, Shubhada R. Kulkarni, Ge Tan, Damir Baranasic, David J. Arenillas, Albin Sandelin, Klaas Vandepoele, Boris Lenhard, Benoît Ballester, Wyeth W. Wasserman, François Parcy, Anthony Mathelier

Nucleic Acids Res., 2018

PLAZA 4.0: an integrative resource for functional, evolutionary and comparative plant genomics.

Michiel Van Bel, Tim Diels, Emmelien Vancaester, Lukasz Kreft, Alexander Botzki, Yves Van de Peer, Frederik Coppens, Klaas Vandepoele

Nucleic Acids Res., 2018

Gearing up to handle the mosaic nature of life in the quest for orthologs.

Kristoffer Forslund, Cécile Pereira, Salvador Capella-Gutiérrez, Alan W. Sousa da Silva, Adrian M. Altenhoff, Jaime Huerta-Cepas, Matthieu Muffato, Mateus Patricio, Klaas Vandepoele, Ingo Ebersberger, Judith A. Blake, Jesualdo Tomás Fernández-Breis, The Quest for Orthologs Consortium, Brigitte Boeckmann, Toni Gabaldón, Erik L. L. Sonnhammer, Christophe Dessimoz, Suzanna Lewis

Bioinform., 2018

2017

PhyD3: a phylogenetic tree viewer with extended phyloXML support for functional genomics data visualization.

Lukasz Kreft, Alexander Botzki, Frederik Coppens, Klaas Vandepoele, Michiel Van Bel

Bioinform., 2017

2015

An update on LNCipedia: a database for annotated human lncRNA sequences.

Pieter-Jan Volders, Kenneth Verheggen, Gerben Menschaert, Klaas Vandepoele, Lennart Martens, Jo Vandesompele, Pieter Mestdagh

Nucleic Acids Res., 2015

PLAZA 3.0: an access point for plant comparative genomics.

Sebastian Proost, Michiel Van Bel, Dries Vaneechoutte, Yves Van de Peer, Dirk Inzé, Bernd Mueller-Roeber, Klaas Vandepoele

Nucleic Acids Res., 2015

BLSSpeller: exhaustive comparative discovery of conserved <i>cis</i>-regulatory elements.

Dieter De Witte, Jan Van de Velde, Dries Decap, Michiel Van Bel, Pieter Audenaert, Piet Demeester, Bart Dhoedt, Klaas Vandepoele, Jan Fostier

Bioinform., 2015

2014

MAGIC: access portal to a cross-platform gene expression compendium for maize.

Qiang Fu, Ana Carolina Fierro, Pieter Meysman, Aminael Sánchez-Rodríguez, Klaas Vandepoele, Kathleen Marchal, Kristof Engelen

Bioinform., 2014

2013

A Parallel, Distributed-Memory Framework for Comparative Motif Discovery.

Dieter De Witte, Michiel Van Bel, Pieter Audenaert, Piet Demeester, Bart Dhoedt, Klaas Vandepoele, Jan Fostier

Proceedings of the Parallel Processing and Applied Mathematics, 2013

2011

A greedy, graph-based algorithm for the alignment of multiple homologous gene lists.

Jan Fostier, Sebastian Proost, Bart Dhoedt, Yvan Saeys, Piet Demeester, Yves Van de Peer, Klaas Vandepoele

Bioinform., 2011