Kieran Smallbone

According to our database, Kieran Smallbone authored at least 13 papers between 2007 and 2017.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2017

Metabolic regulation is sufficient for global and robust coordination of glucose uptake, catabolism, energy production and growth in Escherichia coli.

Pierre Millard, Kieran Smallbone, Pedro Mendes

PLoS Comput. Biol., 2017

2016

Toward Community Standards and Software for Whole-Cell Modeling.

Dagmar Waltemath, Jonathan R. Karr, Frank T. Bergmann, Vijayalakshmi Chelliah, Michael Hucka, Marcus Krantz, Wolfram Liebermeister, Pedro Mendes, Chris J. Myers, Pinar Pir, Begum Alaybeyoglu, Naveen K. Aranganathan, Kambiz Baghalian, Arne T. Bittig, Paulo E. Pinto Burke, Matteo Cantarelli, Yin Hoon Chew, Rafael S. Costa, Joseph Cursons, Tobias Czauderna, Arthur P. Goldberg, Harold F. Gómez, Jens Hahn, Tuure Hameri, Daniel F. Hernandez Gardiol, Denis Kazakiewicz, Ilya Kiselev, Vincent Knight-Schrijver, Christian Knüpfer, Matthias König, Daewon Lee, Audald Lloret-Villas, Nikita Mandrik, J. Kyle Medley, Bertrand Moreau, Hojjat Naderi-Meshkin, Sucheendra K. Palaniappan, Daniel Priego-Espinosa, Martin Scharm, Mahesh Sharma, Kieran Smallbone, Natalie J. Stanford, Je-Hoon Song, Tom Theile, Milenko Tokic, Namrata Tomar, Vasundra Touré, Jannis Uhlendorf, Thawfeek M. Varusai, Leandro H. Watanabe, Florian Wendland, Markus Wolfien, James T. Yurkovich, Yan Zhu, Argyris Zardilis, Anna Zhukova, Falk Schreiber

IEEE Trans. Biomed. Eng., 2016

2015

A robust and efficient method for estimating enzyme complex abundance and metabolic flux from expression data.

Brandon E. Barker, Narayanan Sadagopan, Yiping Wang, Kieran Smallbone, Christopher R. Myers, Hongwei Xi, Jason W. Locasale, Zhenglong Gu

Comput. Biol. Chem., 2015

BioPreDyn-bench: a suite of benchmark problems for dynamic modelling in systems biology.

Alejandro Fernández Villaverde, David Henriques, Kieran Smallbone, Sophia Bongard, Joachim Schmid, Damjan Cicin-Sain, Anton Crombach, Julio Saez-Rodriguez, Klaus Mauch, Eva Balsa-Canto, Pedro Mendes, Johannes Jaeger, Julio R. Banga

BMC Syst. Biol., 2015

2014

BioPreDyn-bench: benchmark problems for kinetic modelling in systems biology.

Alejandro Fernández Villaverde, David Henriques, Kieran Smallbone, Sophia Bongard, Joachim Schmid, Damjan Cicin-Sain, Anton Crombach, Julio Saez-Rodriguez, Klaus Mauch, Eva Balsa-Canto, Pedro Mendes, Johannes Jaeger, Julio R. Banga

CoRR, 2014

2013

Version 6 of the consensus yeast metabolic network refines biochemical coverage and improves model performance.

Benjamin D. Heavner, Kieran Smallbone, Nathan D. Price, Larry P. Walker

Database J. Biol. Databases Curation, 2013

2012

Improving metabolic flux predictions using absolute gene expression data.

Dave Lee, Kieran Smallbone, Warwick B. Dunn, Ettore Murabito, Catherine Winder, Douglas B. Kell, Pedro Mendes, Neil Swainston

BMC Syst. Biol., 2012

Yeast 5 - an expanded reconstruction of the Saccharomyces cerevisiae metabolic network.

Benjamin D. Heavner, Kieran Smallbone, Brandon Barker, Pedro Mendes, Larry P. Walker

BMC Syst. Biol., 2012

2011

The SuBliMinaL Toolbox: automating steps in the reconstruction of metabolic networks.

Neil Swainston, Kieran Smallbone, Pedro Mendes, Douglas B. Kell, Norman W. Paton

J. Integr. Bioinform., 2011

Kinetic modelling of large-scale metabolic networks.

Pedro Mendes, Natalie J. Stanford, Kieran Smallbone

Proceedings of the Computational Methods in Systems Biology, 9th International Conference, 2011

2010

Towards a genome-scale kinetic model of cellular metabolism.

Kieran Smallbone, Evangelos Simeonidis, Neil Swainston, Pedro Mendes

BMC Syst. Biol., 2010

Further developments towards a genome-scale metabolic model of yeast.

Paul D. Dobson, Kieran Smallbone, Daniel Jameson, Evangelos Simeonidis, Karin Lanthaler, Pinar Pir, Chuan Lu, Neil Swainston, Warwick B. Dunn, Paul Fisher, Duncan Hull, Marie Brown, Olusegun Oshota, Natalie J. Stanford, Douglas B. Kell, Ross D. King, Stephen G. Oliver, Robert D. Stevens, Pedro Mendes

BMC Syst. Biol., 2010

2007

A Model to Investigate the Feasibility of Fdg as a Surrogate Marker of Hypoxia.

Catherine J. Kelly, Kieran Smallbone, Tiina Roose, Michael Brady

Proceedings of the 2007 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, 2007