Kenneth P. Nephew

According to our database, Kenneth P. Nephew authored at least 18 papers between 2005 and 2016.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2016

Subtype-specific CpG island shore methylation and mutation patterns in 30 breast cancer cell lines.

Heejoon Chae, Sangseon Lee, Kenneth P. Nephew, Sun Kim

BMC Syst. Biol., 2016

2015

BioVLAB-MMIA-NGS: microRNA-mRNA integrated analysis using high-throughput sequencing data.

Heejoon Chae, SungMin Rhee, Kenneth P. Nephew, Sun Kim

Bioinform., 2015

2013

Genome-Wide Analysis and Modeling of DNA methylation susceptibility in 30 Breast Cancer Cell Lines by using CPG Flanking Sequences.

Jaehyun An, Kwangsoo Kim, SungMin Rhee, Heejoon Chae, Kenneth P. Nephew, Sun Kim

J. Bioinform. Comput. Biol., 2013

2012

A dynamic time order network for time-series gene expression data analysis.

Pengyue Zhang, Raphaël Mourad, Yang Xiang, Kun Huang, Tim Hui-Ming Huang, Kenneth P. Nephew, Yunlong Liu, Lang Li

BMC Syst. Biol., 2012

A novel k-mer mixture logistic regression for methylation susceptibility modeling of CpG dinucleotides in human gene promoters.

Youngik Yang, Kenneth P. Nephew, Sun Kim

BMC Bioinform., 2012

2011

A modulated empirical Bayes model for identifying topological and temporal estrogen receptor α regulatory networks in breast cancer.

Changyu Shen, Yi-Wen Huang, Yunlong Liu, Guohua Wang, Yuming Zhao, Zhiping Wang, Mingxiang Teng, Yadong Wang, David A. Flockhart, Todd C. Skaar, Pearlly Yan, Kenneth P. Nephew, Tim Hui-Ming Huang, Lang Li

BMC Syst. Biol., 2011

Transitioning BioVLab cloud workbench to a science gateway.

Suresh Marru, Heejoon Chae, Patanachai Tangchaisin, Sun Kim, Marlon E. Pierce, Kenneth P. Nephew

Proceedings of the 2011 TeraGrid Conference - Extreme Digital Discovery, 2011

An ERα/modulator regulatory network in the breast cancer cells.

Heng-Yi Wu, Yu Wang, Pengyue Zheng, Guanglong Jiang, Yunlong Liu, Tim Hui-Ming Huang, Kenneth P. Nephew, Lang Li

Proceedings of the 2011 IEEE International Workshop on Genomic Signal Processing and Statistics, 2011

Empirical bayes model comparisons for differential methylation analysis.

Mingxiang Teng, Yadong Wang, Yunlong Liu, Seongho Kim, Curtis Balch, Kenneth P. Nephew, Lang Li

Proceedings of the 2011 IEEE International Workshop on Genomic Signal Processing and Statistics, 2011

BioVLAB-MMIA: A Reconfigurable Cloud Computing Environment for microRNA and mRNA Integrated Analysis.

Hyungro Lee, Youngik Yang, Heejoon Chae, Seungyoon Nam, Donghoon Choi, Patanachai Tangchaisin, Chathura Herath, Suresh Marru, Kenneth P. Nephew, Sun Kim

Proceedings of the IEEE International Conference on Bioinformatics and Biomedicine, 2011

2009

MicroRNA and mRNA integrated analysis (MMIA): a web tool for examining biological functions of microRNA expression.

Seungyoon Nam, Meng Li, Kwangmin Choi, Curtis Balch, Sun Kim, Kenneth P. Nephew

Nucleic Acids Res., 2009

An integrative ChIP-chip and gene expression profiling to model SMAD regulatory modules.

Huaxia Qin, Michael W. Y. Chan, Sandya Liyanarachchi, Curtis Balch, Dustin P. Potter, Irene J. Souriraj, Alfred S. L. Cheng, Francisco J. Agosto-Perez, Elena Nikonova, Pearlly Yan, Huey-Jen Lin, Kenneth P. Nephew, Joel H. Saltz, Louise C. Showe, Tim Hui-Ming Huang, Ramana V. Davuluri

BMC Syst. Biol., 2009

Computational analysis of microRNA profiles and their target genes suggests significant involvement in breast cancer antiestrogen resistance.

Fuxiao Xin, Meng Li, Curtis Balch, Michael Thomson, Meiyun Fan, Yunlong Liu, Scott M. Hammond, Sun Kim, Kenneth P. Nephew

Bioinform., 2009

2008

Enriched transcription factor binding sites in hypermethylated gene promoters in drug resistant cancer cells.

Meng Li, Hyun-il Henry Paik, Curtis Balch, Yoosung Kim, Lang Li, Tim Hui-Ming Huang, Kenneth P. Nephew, Sun Kim

Bioinform., 2008

Predicting DNA Methylation Susceptibility Using CpG Flanking Sequences.

Sun Kim, Meng Li, Hyun-il Henry Paik, Kenneth P. Nephew, Huidong Shi, Robin Kramer, Dong Xu, Tim Hui-Ming Huang

Proceedings of the Biocomputing 2008, 2008

2007

Identification of Transcription Factor and microRNA Binding Sites from Array-derived Gene Expression Data.

Guohua Wang, Xin Wang, Lang Li, Kenneth P. Nephew, Howard J. Edenberg, Feng Zhou, Yunlong Liu

Proceedings of the International Conference on Bioinformatics & Computational Biology, 2007

2006

A mixture model-based discriminate analysis for identifying ordered transcription factor binding site pairs in gene promoters directly regulated by estrogen receptor-alpha.

Lang Li, Alfred S. L. Cheng, Victor X. Jin, Henry H. Paik, Meiyun Fan, Xiaoman Li, Wei Zhang, Jason Robarge, Curtis Balch, Ramana V. Davuluri, Sun Kim, Tim Hui-Ming Huang, Kenneth P. Nephew

Bioinform., 2006

2005

Epigenetic Hypothesis Tests for Methylation and Acetylation in a Triple Microarray System.

Lang Li, Huidong Shi, Constantin T. Yiannoutsos, Tim Hui-Ming Huang, Kenneth P. Nephew

J. Comput. Biol., 2005