Kenji Yasuoka

According to our database, Kenji Yasuoka authored at least 23 papers between 2000 and 2024.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2024

Hysteresis Elimination for an Anisotropic Liquid-Crystal Model via Molecule Design and Replica-Exchange Optimization.

Akie Kowaguchi, Paul E. Brumby, Kenji Yasuoka

J. Chem. Inf. Model., 2024

2023

Prediction of Water Diffusion in Wide Varieties of Polymers with All-Atom Molecular Dynamics Simulations and Deep Generative Models.

Ryo Kawada, Katsuhiro Endo, Kenji Yasuoka, Hidekazu Kojima, Nobuyuki Matubayasi

J. Chem. Inf. Model., 2023

2022

An Efficient Random Number Generation Method for Molecular Simulation.

Kiyoshiro Okada, Paul E. Brumby, Kenji Yasuoka

J. Chem. Inf. Model., 2022

Optimal Replica-Exchange Molecular Simulations in Combination with Evolution Strategies.

Akie Kowaguchi, Katsuhiro Endo, Paul E. Brumby, Kentaro Nomura, Kenji Yasuoka

J. Chem. Inf. Model., 2022

Prediction of transport property via machine learning molecular movements.

Ikki Yasuda, Yusei Kobayashi, Katsuhiro Endo, Yoshihiro Hayakawa, Kazuhiko Fujiwara, Kuniaki Yajima, Noriyoshi Arai, Kenji Yasuoka

CoRR, 2022

MD-GAN with multi-particle input: the machine learning of long-time molecular behavior from short-time MD data.

Ryo Kawada, Katsuhiro Endo, Daisuke Yuhara, Kenji Yasuoka

CoRR, 2022

A stochastic Hamiltonian formulation applied to dissipative particle dynamics.

Linyu Peng, Noriyoshi Arai, Kenji Yasuoka

Appl. Math. Comput., 2022

2019

Dataflow programming for the analysis of molecular dynamics with AViS, an analysis and visualization software application.

Kai Pua, Daisuke Yuhara, Sho Ayuba, Kenji Yasuoka

CoRR, 2019

2018

Multi-Step Time Series Generator for Molecular Dynamics.

Katsuhiro Endo, Katsufumi Tomobe, Kenji Yasuoka

Proceedings of the Thirty-Second AAAI Conference on Artificial Intelligence, 2018

2015

Comparison of the accuracy of periodic reaction field methods in molecular dynamics simulations of a model liquid crystal system.

Takuma Nozawa, Kazuaki Z. Takahashi, Tetsu Narumi, Kenji Yasuoka

J. Comput. Chem., 2015

2013

Petascale turbulence simulation using a highly parallel fast multipole method on GPUs.

Rio Yokota, Lorena A. Barba, Tetsu Narumi, Kenji Yasuoka

Comput. Phys. Commun., 2013

2012

GPU-accelerated computation of electron transfer.

Siegfried Höfinger, Angela Acocella, Sergiu C. Pop, Tetsu Narumi, Kenji Yasuoka, Titus Beu, Francesco Zerbetto

J. Comput. Chem., 2012

DS-CUDA: A Middleware to Use Many GPUs in the Cloud Environment.

Minoru Oikawa, Atsushi Kawai, Kentaro Nomura, Kenji Yasuoka, Kazuyuki Yoshikawa, Tetsu Narumi

Proceedings of the 2012 SC Companion: High Performance Computing, 2012

2011

Petascale turbulence simulation using a highly parallel fast multipole method

Rio Yokota, Tetsu Narumi, Lorena A. Barba, Kenji Yasuoka

CoRR, 2011

Fast Calculation of Electrostatic Potentials on the GPU or the ASIC MD-GRAPE-3.

Tetsu Narumi, Kenji Yasuoka, Makoto Taiji, Francesco Zerbetto, Siegfried Höfinger

Comput. J., 2011

2009

Current performance gains from utilizing the GPU or the ASIC MDGRAPE-3 within an enhanced Poisson Boltzmann approach.

Tetsu Narumi, Kenji Yasuoka, Makoto Taiji, Siegfried Höfinger

J. Comput. Chem., 2009

Fast multipole methods on a cluster of GPUs for the meshless simulation of turbulence.

Rio Yokota, Tetsu Narumi, Ryuji Sakamaki, Shun Kameoka, Shinnosuke Obi, Kenji Yasuoka

Comput. Phys. Commun., 2009

42 TFlops hierarchical <i>N</i>-body simulations on GPUs with applications in both astrophysics and turbulence.

Tsuyoshi Hamada, Tetsu Narumi, Rio Yokota, Kenji Yasuoka, Keigo Nitadori, Makoto Taiji

Proceedings of the ACM/IEEE Conference on High Performance Computing, 2009

2008

Accelerating Molecular Dynamics Simulations on PlayStation 3 Platform Using Virtual-GRAPE Programming Model.

Tetsu Narumi, Shun Kameoka, Makoto Taiji, Kenji Yasuoka

SIAM J. Sci. Comput., 2008

Overheads in Accelerating Molecular Dynamics Simulations with GPUs.

Tetsu Narumi, Ryuji Sakamaki, Shun Kameoka, Kenji Yasuoka

Proceedings of the Ninth International Conference on Parallel and Distributed Computing, 2008

2004

Simulations of magnetic materials with MDGRAPE-2.

Bruce G. Elmegreen, Roger H. Koch, Manfred E. Schabes, Tiffany Crawford, Toshikazu Ebisuzaki, Hideaki Furusawa, Tetsu Narumi, Ryutaro Susukita, Kenji Yasuoka

IBM J. Res. Dev., 2004

2000

A smooth-particle mesh Ewald method for DL_POLY molecular dynamics simulation package on the Fujitsu VPP700.

Kholmirzo Kholmurodov, William Smith, Kenji Yasuoka, Thomas A. Darden, Toshikazu Ebisuzaki

J. Comput. Chem., 2000

1.34 Tflops Molecular Dynamics Simulation for NaCl with a Special-Purpose Computer: MDM.

Tetsu Narumi, Ryutaro Susukita, Takahiro Koishi, Kenji Yasuoka, Hideaki Furusawa, Atsushi Kawai, Toshikazu Ebisuzaki

Proceedings of the Proceedings Supercomputing 2000, 2000